BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24370.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492411 jgi|Araly1|492411|fgenesh2_kg.7__1844__AT4G24370.1 728 0.0
> Ahg492411 jgi|Araly1|492411|fgenesh2_kg.7__1844__AT4G24370.1
Length=574
Score = 728 bits (394), Expect = 0.0
Identities = 486/530 (92%), Gaps = 8/530 (2%)
Strand=Plus/Plus
Query 7 TTTGAGATCAACAG-ATT-C-GAGAGATGAGGAGAGGAGGCAAGGAAGAAGACGAAGTTG 63
|||| ||||||||| || | |||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TTTGCGATCAACAGTTTTGCTGAGAGATGAGGAAAGGAGGCAAGGAAGAAGACGAAGTTG 60
Query 64 AACAGTTGCTTCAAGCAGCTCAAGATGAGATGATACTAAAGCTCTCTGTTGATTCTCACA 123
|||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 61 AACAATTGCTTCAAGCGGCTCAAGATGAGATGATACTCAAGCTCTCTGTAGATTCTCACA 120
Query 124 CTTCTCGATCTTCTTCCGATTACTTAGATCCAGATCTTCACTCTAGATTTCTCGCTCTCA 183
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CTTCTCGATCCTCTTCCGATTACTTAGATCCAGATCTCCACTCTAGATTTCTCGCTCTCA 180
Query 184 AATCTCAAAAGAAGAAGGATCAGCAGCAACAACAG-A-AA-CAACGGCCGAGAA-TGCAG 239
||||||||||||||||||||| |||||||||||| | || | |||||||||| | | |
Sbjct 181 AATCTCAAAAGAAGAAGGATCTGCAGCAACAACAACATAAACGACGGCCGAGATCTCC-G 239
Query 240 CCGAAATCAAAGGATGTGGTTGAAGAAACACCAGAAGATCTCATGCTTAGATTCGCGGCT 299
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 240 ACGAAATCAAAGGATGTGGTTGAAGAAACGCCAGACGATCTCATGCTCCGATTCGCGGCT 299
Query 300 CTGAAAACTTCTCTCCCCTCCGCGTCTTCTTCGTCCTCTGTTCTTCTTCAGGATGAAATC 359
||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 300 CTGAAGACTTCTCTCCCTTCTGCGTCTTCTTCGTCCTCTGTACTTCTTCAGGATGAAATC 359
Query 360 GGAGAAGATGGTGATGAAATCGGAGAAGATGCTGAAGTGGATAAGCTGATCCAATGGGCT 419
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 360 GGAGAAGATGGTGATGAAATCGGAGAAGATGCTGAAGTGGAGAAGCTGATTCAATGGGCT 419
Query 420 ATAGACGCAGCCCGTCTCGATCCGTCTCCGTCTTCTGACGATGAGCAAAGCCAGAATTGC 479
|||||||| |||||||| ||||| |||||| |||| |||||||| |||||||||| || |
Sbjct 420 ATAGACGCCGCCCGTCTTGATCCTTCTCCGCCTTCAGACGATGATCAAAGCCAGAGTTCC 479
Query 480 GATAGCGATGATGAGAATGATTCAACTAGAGATGTTAAACCTTAATTTTA 529
|||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 480 GATAGCGATGATGAGAATAATTCAACGAAAGATGTTAAACCTTAATTTTA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5