BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24400.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945660 jgi|Araly1|945660|scaffold_701889.1 2263 0.0
> Ahg945660 jgi|Araly1|945660|scaffold_701889.1
Length=1380
Score = 2263 bits (1225), Expect = 0.0
Identities = 1336/1389 (96%), Gaps = 10/1389 (1%)
Strand=Plus/Plus
Query 96 TTGAAATTGAGTAGAAGCAGAAGAGAATATGGTGGTAAGGAAGGTGGGCAAGTATGAATT 155
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 TTGAAATCGAGTAGAAGC---AGAG---ATGGTGGTAAGGAAGGTGGGCAAGTATGAATT 54
Query 156 AGGTAGAACAATCGGCGAAGGTACTTTCGCTAAAGTCAAGTTCGCTCAGAATACAGAGAC 215
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 55 AGGTAGAACAATCGGCGAAGGTACCTTCGCTAAAGTCAAGTTCGCTCAGAACACAGAGAC 114
Query 216 CGGTGAGAGCGTCGCCATGAAAATCGTGGATCGTAGCACAATCATCAAGCGCAAGATGGT 275
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 115 CGGTGAGAGCGTCGCCATGAAAATCGTGGATCGTAGTACCATCATCAAACGCAAGATGGT 174
Query 276 GGATCAGATTAAGAGAGAGATCTCGATTATGAAGCTTGTTCGTCATCCTTGTGTTGTTCG 335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGATCAGATTAAGAGAGAGATCTCGATTATGAAGCTTGTTCGTCATCCTTGTGTTGTTCG 234
Query 336 TCTTTATGAGGTTCTAGCAAGCCGTACAAAGATTTATATCATCCTGGAGTACATTACTGG 395
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 235 TCTTTATGAGGTTCTAGCAAGCCGCACAAAGATTTATATCATCCTGGAGTACATTACTGG 294
Query 396 TGGTGAACTGTTTGATAAGATTGTTCGTAATGGACGACTTAGTGAGTCAGAAGCTAGGAA 455
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 295 TGGTGAACTGTTTGATAAAATTGTTCGTAATGGACGACTTGGTGAATCAGAAGCTAGGAA 354
Query 456 ATACTTTCACCAGCTTATTGATGGAGTTGATTACTGTCATAGTAAAGGTGTTTACCACAG 515
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 355 ATACTTTCAACAGCTTATTGACGGAGTTGATTACTGTCATAGTAAAGGTGTCTACCACAG 414
Query 516 AGATCTAAAGCCGGAAAATCTTCTGTTGGATTCTCAAGGAAATCTCAAGATATCTGATTT 575
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 415 AGATCTAAAGCCGGAAAATCTTCTGCTGGACTCTCAAGGAAATCTCAAGATATCTGATTT 474
Query 576 TGGCCTCAGTGCATTACCTGAACAAGGAGTTACCATCCTAAAGACAACATGTGGAACTCC 635
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGGTCTCAGTGCATTACCAGAGCAAGGAGTTACCATCCTAAAGACAACATGTGGAACTCC 534
Query 636 CAATTACGTTGCTCCTGAGGTTCTCAGTCACAAGGGTTACAATGGTGCCGTTGCAGATAT 695
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 535 CAATTACGTTGCTCCTGAGGTTCTCAGTCACAAGGGTTACAATGGTGCCGTGGCAGATGT 594
Query 696 TTGGTCCTGTGGGGTCATCCTTTATGTTCTTATGGCAGGATATCTTCCATTTGATGAAAT 755
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTGGTCCTGTGGGATCATCCTTTATGTTCTTATGGCAGGATATCTTCCATTTGATGAAAT 654
Query 756 GGATCTACCAACTTTATATAGTAAGATCGACAAAGCTGAGTTCTCTTGCCCCTCATATTT 815
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 655 GGATCTACCAACTTTATATAGTAAGATCGACAAAGCTGACTTCGCTTGCCCCTCATATTT 714
Query 816 TGCCCTGGGGGCAAAGTCCTTGATTAATAGAATTTTGGATCCAAATCCAGAAACTCGGAT 875
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 715 TGCCTTGGGTGCAAAGTCCTTGATTAATAGAATTTTGGATCCAAATCCTGAAACTCGAAT 774
Query 876 TACAATTGCAGAAATCAGGAAAGATGAGTGGTTTCTAAAGGATTACACTCCTGTACAACT 935
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 775 TACAATTGCAGAAATCAGGAAAGATGAGTGGTTTTTAAAGGATTACACTCCTGTACAACT 834
Query 936 TATCGATTACGAACATGTAAACCTGGATGATGTATATGCTGCTTTTGATGATCCGGAGGA 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TATCGATTACGAACATGTAAACCTGGATGATGTATATGCTGCTTTTGATGATCCGGAGGA 894
Query 996 ACAAACATATGCACAGGATGGAACAAGAG-ACACAGGTCCACTAACTCTAAATGCGTTTG 1054
||| |||||||||||||||||||| || | |||| |||||||| ||||||||||||||||
Sbjct 895 ACATACATATGCACAGGATGGAAC-AGGGTACACGGGTCCACTGACTCTAAATGCGTTTG 953
Query 1055 ACCTAATTATTCTATCTCAGGGCCTGAACCTCGCAACTCTTTTTGACCGTGGAAAGGACT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ACCTAATTATTCTATCTCAGGGCCTGAACCTCGCAACTCTTTTTGACCGTGGAAAGGACT 1013
Query 1115 CCATGAAGCACCAGACAAGGTTCATCTCACACAAGCCAGCAAACGTGGTTCTCTCAAGCA 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CCATGAAGCACCAGACAAGGTTCATCTCACACAAGCCAGCAAACGTGGTTCTCTCAAGCA 1073
Query 1175 TGGAAGTTGTGTCACAGTCTATGGGCTTTAAGACACACATTCGTAATTACAAGATGAGAG 1234
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGGAAGTTGTGTCGCAGTCTATGGGCTTTAAGACACACATTCGTAATTACAAGATGAGAG 1133
Query 1235 TGGAAGGATTATCTGCAAATAAGACATCTCATTTCTCCGTCATACTAGAAGTCTTCAAAG 1294
| ||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 1134 TCGAAGGATTATCTGCAAATAAGACGTCTCATTTCTCTGTCATTCTAGAAGTATTCAAAG 1193
Query 1295 TTGCACCATCAATTCTCATGGTAGACATTCAAAATGCAGCAGGAGACGCAGAAGAATACC 1354
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTGCACCATCAATACTCATGGTAGACATTCAAAATGCAGCAGGAGACGCAGAAGAATACC 1253
Query 1355 TTAAGTTCTACAAGACTTTTTGTAGTAAGCTTGATGACATCATTTGGAAGCCGCCAGATG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTAAGTTCTACAAGACTTTTTGTAGTAAGCTTGATGACATCATTTGGAAGCCGCCAGATG 1313
Query 1415 CATCTATGAGAAATCGAGTCACCAAGGCCAAGAGTAAAAGACGTTGAATCCACGTGCGTG 1474
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1314 CATCTATGAGAAATCGAGTCACCAAGGCCAAGAGTAAAAGACGTTGAATCCATGTGTGT- 1372
Query 1475 GTATTCAAG 1483
||||||||
Sbjct 1373 -TATTCAAG 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5