BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24460.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492400 jgi|Araly1|492400|fgenesh2_kg.7__1833__AT4G24460.1 1978 0.0
> Ahg492400 jgi|Araly1|492400|fgenesh2_kg.7__1833__AT4G24460.1
Length=1323
Score = 1978 bits (1071), Expect = 0.0
Identities = 1235/1311 (94%), Gaps = 23/1311 (2%)
Strand=Plus/Plus
Query 2 ATGGATACCGTTCTCATGGCTACAACACCACCAATCAGATGTCTTCATGCTTCAATTCCT 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATACCGTTCTCATGGCTACAACACAACCAATCAGATGTCTTCATGCTTCGATTCCT 60
Query 62 ACGGTGTTC-CGTTCGCCGGCGATTTATCAGGTCAGCTGCCGGAGCTCCCA-ACTGTTTT 119
||||| || |||||||||||||||||||||||||||| ||| |||| | | ||| || |
Sbjct 61 ACGGT-ATCTCGTTCGCCGGCGATTTATCAGGTCAGCTACCGTAGCT-CAAGACTCTTGT 118
Query 120 CCTACCGTTCGACGACTATGATGAGCAT-GTGTTTTCTCAGACGGTCCGATTTGAGATCT 178
||||||| |||||||| | |||||| | |||||||||||||||||||||||||||||||
Sbjct 119 CCTACCGATCGACGAC--T-ATGAGC-TCGTGTTTTCTCAGACGGTCCGATTTGAGATCT 174
Query 179 CGCTTT-CTTAGTACTCCGAAAACCACTTCTCCGATGAGACGACCTCGCTTTTCCGTCGG 237
|| ||| ||||||||| |||| ||||||||||| | | |||||||||||
Sbjct 175 CG-TTTCCTTAGTACT---------ACTTTTCCGATGAGAC-A--TGGCTTTTCCGTCAA 221
Query 238 TGCTTCTACGGAGGAGTCTTCAATTCCTTCTAATCGGAACCTTATCGTGGCTAACTCCGT 297
|||||| |||||| ||||| ||||||||||||||||||||| ||| |||| |||||||||
Sbjct 222 TGCTTCGACGGAGCAGTCTACAATTCCTTCTAATCGGAACCATATTGTGGTTAACTCCGT 281
Query 298 CGTAATCGTAGCTTTAGCTGTAGCTAATCGCGTGCTCTACAAACTCGCTTTGGTTCCCAT 357
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 282 CGTCATCGTAGCTTTAGCTGTAGCTAATCGCGTGCTCTACAAACTCGCCTTGGTTCCCAT 341
Query 358 GAAACAGTACCCTTTTTTCATGGCTCAGCTCACCACTTTCGGCTACGTCTTGATTTATTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GAAACAGTACCCTTTTTTCATGGCTCAGCTCACCACTTTCGGCTACGTCTTGATTTATTT 401
Query 418 CACCATTCTGTATACGAGGCGCCGTCTAGGCATTGTGACGAATGAAATGATGGATGTACC 477
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 402 CACCATTCTGTATACGAGGCGCCGTCTAGGCATTGTGACAAATGAAATGATGGCTGTACC 461
Query 478 CAAATGGAGATTCGCAATCATTGGTTTTCTCGAAGCTCTTGGTGTTGCCACTGGCATGGC 537
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 462 CAAATGGAGATTCGCAATCATTGGTTTTCTTGAAGCTATTGGAGTTGCCACTGGCATGGC 521
Query 538 TGCAGCAGCAATGCTTCCTGGACCAGTTATACCCATTTTGAATCAGACATATTTGGTGTG 597
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 522 TGCAGCAGCCATGCTTCCTGGACCAGTTATACCCATTTTGAATCAGACGTTTTTGGTGTG 581
Query 598 GCAGCTGCTTTTTGCTCTTCTTATTTTAGGCAGGAGGTTTTTGCTTAACCAAATTGCTGG 657
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 582 GCAGCTGCTTTTTGCTCTTCTTATTTTGGGCAGGAGCTTTTTGCTTAACCAAATTGCTGG 641
Query 658 TTGTCTCCTTGTGGCTGTGGGGGTTGTGGTGGCTGTTTCAAGTGGATCTGGTGCAGATAC 717
|||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 642 TTGTTTTCTTGTGGCTGTGGGCGTTGTGGTGTCTGTTTCAAGTGGATCTGGTGCAGATAC 701
Query 718 TACGCTATCTGGAATCGGTTTCTTATGGCCTGCTGTATTGGTAGCATCCGCTGCTTTTCA 777
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 702 TACGCTATCTGGTATTGGTTTCTTATGGCCTGCTGTATTGGTAGCATCTGCTGCTTTTCA 761
Query 778 AGCTGGTGCATCTATCATAAAGGAATTTGTTTTCAATGATGCTGCAAAGCGTCTTGAGGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AGCTGGTGCATCTATCATAAAGGAATTTGTTTTCAATGATGCTGCAAAGCGTCTTGAGGG 821
Query 838 AAAGTCACTGGATATATTTGTGGTAAATTCATTTGGATCTGGATTTCAGGCTCTTTTTGT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 822 AAAGTCACTGGATATATTTGTGGTAAATTCATTTGGATCTGGATTTCAGGCTCTTTTCGT 881
Query 898 GTTCCTGTTGTTGCCTTTTCTCTCAAACTTGAAAGGCATTCCATTCGCCAGCCTTCCTTC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GTTCCTGTTGTTGCCTTTTCTCTCAAACTTGAAAGGCATTCCATTCGCCAGCCTTCCTTC 941
Query 958 ATATCTAAAAGATGGTGCCGGATGCTTCTTCAACACTGGAGCTAAGATTTCTGGCTGTGA 1017
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 942 GTATCTAAAAGATGGTGCCGGCTGCTTCTTCAACACTGGAGCTAAGATTTCTGGCTGTGA 1001
Query 1018 TGGTGCCCCTATACTCCCACTGCTCTATATATCCACCAATCTCGCTTTCAACATCTCATT 1077
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1002 TGGTGCCCCTATACTCCCACTACTCTATATAGCCACCAATCTCGCTTTCAACATCTCATT 1061
Query 1078 GCTCCATCTGGTGAAAATATCTTCAGCAATCGTTTCCTCTCTTACCATGATGCTCTCAGT 1137
||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 1062 GCTTCATCTGGTGAAAATATCTTCGGCAATCGTTTCCTCTCTCGCTGTGATGCTCTCAGT 1121
Query 1138 GCCATTAGCGGTGTACATAATGTCAAAACCATTGCCGTATCTACCGGGAGGATCAAGCTT 1197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GCCATTATCGGTGTACATAATGTCAAAACCATTGCCGTATCTACCGGGAGGATCAAGCTT 1181
Query 1198 GAGCTCAAATTTTACGATGGGGTGTATAGTTCTTGTCCTAGGTCTTCTTCTCTACAACAT 1257
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1182 GAGCTCAAATTTCACGATGGGGTGTATAGTTCTGGTCCTAGGTCTTCTTCTCTACAACAT 1241
Query 1258 TCCCACTACTCCAACTAAACAACACACCAAGACCTCCTAACACACTCACTC 1308
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1242 TCCCACTACTCCAACTAAACAACACACCAAGACCTCCTAACACACTCTCTC 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5