BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24470.3
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492399 jgi|Araly1|492399|fgenesh2_kg.7__1832__AT4G24470.2 1604 0.0
Ahg952076 jgi|Araly1|952076|scaffold_35500001.1 102 6e-21
Ahg946986 jgi|Araly1|946986|scaffold_703215.1 102 6e-21
Ahg925203 jgi|Araly1|925203|scaffold_200764.1 102 6e-21
> Ahg492399 jgi|Araly1|492399|fgenesh2_kg.7__1832__AT4G24470.2
Length=1219
Score = 1604 bits (868), Expect = 0.0
Identities = 1029/1100 (94%), Gaps = 37/1100 (3%)
Strand=Plus/Plus
Query 216 TTTCCGATGTTTGGTCGCCA---T---TC---GATTATCCCAAATAACCAGATTGGTACC 266
|||||||||||||||||||| | || ||||||||| ||||||||||||||||||
Sbjct 115 TTTCCGATGTTTGGTCGCCATTCTCAATCGGTGATTATCCCCAATAACCAGATTGGTACC 174
Query 267 GCCTCTGCTTCCGCTGGTGAAGACCATGTCTCTGCCTCCGCTACGTCTGGTCACATTCCT 326
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 175 GCCTCTGCTTCCGCTGGTGAAGACCATGTCTCTGCCTCCGCAACGTCTGGTCACATTCCT 234
Query 327 TACGACGATATGGAAGAAATCCCTCATCCTGACTCTATCTATGGTGCTGCCTCCGATTTG 386
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 235 TACGACGATATGGACGAAATCCCTCATCCTGACTCCATTTATGGTGCTGCCTCCGATTTG 294
Query 387 ATTCCCGATGGCTCTCAATTGGTTGCTCACCGATCCGATGGCTCTGAATTACTTGTTTCT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 295 ATTCCCGATGGCTCTCAATTGGTTGCTCACCGATCCGATGGCTCTGAATTACTAGTTTCT 354
Query 447 CGGCCACCGGAAGGGGCGAATCAGCTTACGATCTCGTTCCGTGGACAAGTTTACGTTTTT 506
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 CGGCCACCGGAAGGGGCTAATCAGCTCACGATCTCGTTCCGTGGACAAGTTTACGTTTTT 414
Query 507 GATGCCGTTGGTGCTGACAAGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAG 566
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 415 GATGCTGTTGGTCCTGACAAGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAG 474
Query 567 CTTGCTCCTGGTCCGCAGGTGATGGAACTAGCTCAACAGCAGAATCATATGCCTGTTGTA 626
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 475 CTTGCTCCTGGTCCGCAGGTGATGGAACTAGCT---CAGCAGAATCATATGCCTGTTGTA 531
Query 627 GAATATCAGAGCCGCTGTAGCCTTCCGCAACGGGCACAATCCTTGGATAGGTTTCGGAAG 686
||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GAATACCAGAACCGCTGTAACCTTCCGCAACGGGCACAATCCTTGGATAGGTTTCGGAAG 591
Query 687 AAGAGGAATGCTAGATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCC 746
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 592 AAGAGGAATTCTAGATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTGGCC 651
Query 747 TTAAGAATGGCACGTAATAAAGGTCAATTCACCTCTTCAAAGATGACAGATGGGGCTTAT 806
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 652 TTAAGAATGGCACGTAATAAAGGTCAATTCACGTCTTCAAAGATGACAGATGGGGCTTAT 711
Query 807 AACTCTGGCACAGATCAAGATTCTGCCCAAGATGATGCCCATCCAGAAATATCGTGTACT 866
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 712 AACTCGGGCACAGATCAAGATTCTGCCCAAGATGATGGCCATCCAGAAATATCGTGTACT 771
Query 867 CATTGCGGCATTAGTTCCAAATGTACACCAATGATGCGACGTGGCCCTTCCGGCCCCAGG 926
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CATTGTGGCATTAGTTCCAAATGTACACCAATGATGCGACGTGGCCCTTCCGGCCCCAGG 831
Query 927 ACTCTCTGCAATGCCTGTGGACTTTTTTGGGCTAACAGGGGTACATTGAGGGATCTCTCA 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ACTCTCTGCAATGCCTGTGGACTTTTTTGGGCTAACAGGGGTACATTGAGGGATCTCTCA 891
Query 987 AAGAAAACAGAAGAGAATCAGTTGGCTTTAATGAAACCGGTAAGCTCTTATAAATATCAC 1046
|||||||||||||||||||||||||||||||| |||||| | || ||
Sbjct 892 AAGAAAACAGAAGAGAATCAGTTGGCTTTAATAAAACCG-T---CTG--AT--------- 936
Query 1047 CCTGATGATGGTGGGAGTGTTGCTGATGCTGCTAACAACTTAAACACTGAAGCTGCAAGT 1106
| | || || |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 937 ---G--G-TG-TG--AGTGTTGCTGATGCTGCTAACAACTTAAACTCTGAAGCTGCAACT 987
Query 1107 GTTGAAGAACACACTTCCATGGTTTCTCTTGCCAATGGGGATAATTCTAATCTGTTAGGT 1166
||| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 988 GTTAAAGAACACACTTCCATGGTTTCTCTTGCCAATGGGGACAATTCTCATCTCTTAGGT 1047
Query 1167 GATCACTAAATACTGTGATAAGAATCAGAAGATAGAAA-TCTTTGTAGAATCAGATGGTC 1225
||||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||
Sbjct 1048 GATCACTAAATACTGTGATAAGATTCAGAAGATAGAAAATCCTTGTAGAATCAGTTGGTC 1107
Query 1226 TTCTCTATGAATTTATCTTTTCACCATCACATGTATTATAGAAACCGTAACCGAACCTCA 1285
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1108 ATCTCTATGAACTTATCTTTTCACCATCACATGTATTATAGAAACCATAACCGAACCTCA 1167
Query 1286 AATCAAATACCATATCAGAT 1305
||||||||||||||||||||
Sbjct 1168 AATCAAATACCATATCAGAT 1187
> Ahg952076 jgi|Araly1|952076|scaffold_35500001.1
Length=755
Score = 102 bits (55), Expect = 6e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 604 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 661
Score = 89.8 bits (48), Expect = 5e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAG 751
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 663 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTGGCCTTAAG 713
> Ahg946986 jgi|Araly1|946986|scaffold_703215.1
Length=941
Score = 102 bits (55), Expect = 6e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 607 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 664
Score = 86.1 bits (46), Expect = 6e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAGA 752
|||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 666 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAATGGCCTTAAGA 717
> Ahg925203 jgi|Araly1|925203|scaffold_200764.1
Length=710
Score = 102 bits (55), Expect = 6e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 526 AGGTGGATGCTGTGTTGTCGCTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 583
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 559 AGGTGGATGCTGTGTTGTCGTTGTTGGGTGGTTCTACTGAGCTTGCTCCTGGTCCGCA 616
Score = 78.7 bits (42), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 701 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTCGCCAAGAAGTTGCCTTAAG 751
||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 618 ATGTTTCGAGAAGAAAGTAAGATACGGTGTTTGCCAAGAAATGGCCTTAAG 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5