BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24480.1
Length=3523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492397 jgi|Araly1|492397|fgenesh2_kg.7__1830__AT4G24480.1 4617 0.0
> Ahg492397 jgi|Araly1|492397|fgenesh2_kg.7__1830__AT4G24480.1
Length=3389
Score = 4617 bits (2500), Expect = 0.0
Identities = 3006/3237 (93%), Gaps = 88/3237 (3%)
Strand=Plus/Plus
Query 304 TTGATCGTTTGTTTTTGTTTGTATCTGGATTCAATGACGGGATTTGGTTAAACGAAGAAG 363
|||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 183 TTGATCGTCTGTTTTTGTTTATTTCTGTATTCAATGACGGGATTTGGTTAAACGAAGAAG 242
Query 364 ATTCATTTCTCTGTTCGTTCGATCTG-TAAATTTTTGCTTTCAGAGTGAGATTTTAACGA 422
||||||||||||||| ||| | || || ||||| ||||| ||||||||||||||||
Sbjct 243 ATTCATTTCTCTGTT-GTTTTTTTTGCCAAGGTTTTGATTTCATAGTGAGATTTTAACGA 301
Query 423 AATGCCTCACCGGACTACTTACTTCTTTCCGCGGCAGTTTCCCGATCGTGGATTCGATTC 482
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 302 AATGCCTCACCGGACTACTTACTTCTTCCCGCGGCAGTTTCCTGATCGTGGATTCGATTC 361
Query 483 GTTTTCGCTTAAGAATGATCACGACAAGAAGAAATCGTCGTCTAACGTTGGAGAGAGTTT 542
|| ||||||||||||||||||| |||||| |||||| || |||||| | |||| |||
Sbjct 362 ATTGTCGCTTAAGAATGATCACG---AGAAGATATCGTCTTCCAACGTTAGTGAGAATTT 418
Query 543 TGGATTTCAAAGAGATAATAAATCTAATGGAGTCGGAGAAGATTCTAACAAGGAGAAGGA 602
||||||||||||||| |||||||||||||||||| | |||||||| || ||||| |||||
Sbjct 419 TGGATTTCAAAGAGAGAATAAATCTAATGGAGTCAGCGAAGATTCGAATAAGGACAAGGA 478
Query 603 GA-GTACTGTGTTCTCCTCTAATCCTCTGCTTTCTAAAAGCTCAGCCGTTTCAGATCTCT 661
|| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 479 GACG-ACTGTGTTCTCCTCTAATTCTCTGCTTTCTAAAAGCTCCGCCGTTTCAGATCTCT 537
Query 662 TTAGC---------GATGATCGCAAGTCGGAGAAGAAGCATCAGCAGCAACTAGCCGCTT 712
||||| |||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 538 TTAGCGGTGGTGTTGATGATCGCAAGTCGGAGAAGAAGCAGCAGCAGCAACTTGCGGCTT 597
Query 713 TCTATGAGTGGTTGGCGGAGAAGAAGGCTAATCTCTCTAGGTCATCATCTACTACTACTA 772
||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 598 TCTATGACTGGTTGGCGGAGAAGAAGGCTAATCTCTCTAGGTC-T--TCTACTACTACTA 654
Query 773 CTCATGGACGCGGGGTGAAGCCCACGCGCTTCTCTATGTCTAGCGACGCCGATGAGGAGA 832
||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 655 CTCATGGGCGCGCCGTGAAGCCCACGCGCTTCTCTATGTCGAGTGACGCCGATGAGGAGA 714
Query 833 GAGAGCTTCTGTTGTCT-TCTCCGGCTGATCCCGCTCCGCTTCCTGCTACTTCTTCGCCG 891
|||||| ||| |||| | |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 715 GAGAGCATCTTTTGT-TGTCTCCGGCTGATCCGGCTCCGCTTCCTGCTACGTCTTCGCCG 773
Query 892 GATTC--T-A--------TCAT-TGATTCGGCTAGGACGGTTAACATAC-ATGAACGAAA 938
||||| | | || | | ||||||| | ||||||||||| | ||||||||||
Sbjct 774 GATTCTGTCATCGCGGCGTCTTCTTCTTCGGCTCGAACGGTTAACAT-CAATGAACGAAA 832
Query 939 CATTGATCGGAGCTTTGACAGAGAGGTTTCGCTTCCCCGAATGTCGAGTGAGAGCAGCTT 998
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 833 CATTGATCGGAGCTTTGACAGGGAAGTTTCCCTTCCCCGAATGTCGAGTGAGAGCAGCTT 892
Query 999 CGCTGGAAGCTTCTTCTCCGGGACGACGGTGGACGGGAATTTCTCCAATTTCTCAAGTCA 1058
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CGCTGGAAGTTTCTTCTCCGGGACGACGGTGGACGGGAATTTCTCCAATTTCTCAAGTCA 952
Query 1059 TACAGACGCAAGGGAAACTTCGACCACCACGCTTGTCTCAGTGAACAAAGAGGAAGAAGA 1118
||| |||||||||||||||||||||||||||| |||||| || | ||| || ||||||||
Sbjct 953 TACGGACGCAAGGGAAACTTCGACCACCACGCGTGTCTCTGTCACCAAGGACGAAGAAGA 1012
Query 1119 AGTTGAGGTTAGGGAACAGGGCAAAGAGCAAAGCTTAGCGCAGAAGTCAAGAGAAGGCTA 1178
|||||||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1013 AGTTGAGGTTAGAGAAGAGGGCAAAGAGCAAAGCTTAGCGCAGAAATCAAAAGAAGGCTA 1072
Query 1179 TTACTTGCAGGTCACGCTTGCTAAGTGGCTAAGTTCTCAAGCAAACCTAGCATGTGAGTC 1238
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1073 TTACTTGCAAGTCACGCTTGCTAAGAGGCTAAGTTCTCAAGCAAACCTAGCATGTGACTC 1132
Query 1239 TGTTCATATACAGAGCACAGAATCTATCTCCTACCGTTTTTGGGTAAGTGGTTGTTTATC 1298
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1133 TGTTCATATACAGAGCACAGAAACTGTCTCCTACCGTTTTTGGGTAAGTGGTTGTTTATC 1192
Query 1299 ATACAGTGACAAGATATCAGATGGATTTTACAGTATATTAGGAATGGATCCGTATCTTTG 1358
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1193 ATACAGTGACAAGATATCAGATGGATTTTACAGTATACAAGGGATGGATCCGTATCTTTG 1252
Query 1359 GTTGATGTGTAACAATTCTGAGGATGGCAAACGAATTCCATCTCTTTTGTTACTCAAGGA 1418
|||||||||||||||||| ||||| || ||||||||||| |||||||||||||| |||||
Sbjct 1253 GTTGATGTGTAACAATTCGGAGGAAGGAAAACGAATTCCTTCTCTTTTGTTACTAAAGGA 1312
Query 1419 GACTGAGCCGAATGATACATCAATGGAAGTGGTTTTGATAGATAGACGTGAGGACTCACG 1478
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1313 AACTGAGCCGAATGATACATCAATGGAAGTGGTTTTGATAGACAGACGTGAGGACTCACG 1372
Query 1479 TCTTAAAGAACTGGAGGATAAGGCACATGAGCTGTATTGTTCTTCAGACAACATGTTAGT 1538
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCTTAAAGAACTAGAGGACAAGGCACATGAGCTGTATTGTTCTTCAGACAACATGTTAGT 1432
Query 1539 GCTCGTCGAGAAACTTGGCAGACTTGTTGCGGTCTATATgggggggAATTTCCAGGTGGA 1598
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1433 GCTCGTGGAGAAACTTGGCAGACTTGTTGCCGTTTATATGGGGGGGAATTTCCAGGTGGA 1492
Query 1599 GCAAGGTGATCTCCAGAAACGATGGAAACTGGTCAGCAATAGACTCAAGGAATTTCGGAA 1658
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1493 GCAAGGTGATCTTCAGAAACGATGGAAACTGGTTAGCAATAGACTCAAGGAATTTCGGAA 1552
Query 1659 ATGTATCATTCTTCCTATAGGTAGTCTAACAATGGGCCTTTGCCGGCATCGTGCCATCCT 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 ATGTATCATTCTTCCTATAGGTAGTCTAACAATGGGCCTTTGCCGGCATCGTGCCATCCT 1612
Query 1719 ATTTAAGAAATTGGCTGATTACATAGGTTTACCATGTCGGATAGCTCGAGGTTGCAGATA 1778
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1613 ATTTAAGAAATTGGCTGACTACATAGGTTTACCATGTCGGATAGCTCGAGGTTGCAGGTA 1672
Query 1779 CTGTAAAGAGAGCCACCAATCTTCTTGCCTTGTCAAGATTGACGATGACAGGAAGCTTTC 1838
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 CTGTAGAGAGAGCCACCAATCTTCTTGCCTTGTCAAGATTGACGATGACAGGAAGCTTTC 1732
Query 1839 AAGGGAATATGTAGTTGACCTCATCGGGGAACCAGGAAATGTCCATGATCCGGATTCCTC 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 AAGGGAATATGTAGTTGACCTCATCGGGGAACCAGGAAATGTCCATGATCCGGATTCCTC 1792
Query 1899 TATCAACGGTGAAACACAGTGTCAGATTCCTTCACCTCTTCAAATGAGTCATCTTACAGA 1958
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1793 TATCAACGGTGAAACACAGTGTCAGATTCCTTCACCCCTTCAAATGAGTCATCTTACAGA 1852
Query 1959 TTTTTCCAGGCCTTGCGTGCATAGTACATCTCCTTGTCAGACTGTAGAGTCAAAGACTTC 2018
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1853 TTTTTCCAGGCCTTGCGTGCATAGTACATCTCCTTGTCATACTGTAGAGTCAAAGGCTTC 1912
Query 2019 ACGCACTCTTTCTGAAAACATTCAACGTTCAGGGAGTCAAGGCCAAGTACACAAAGAATT 2078
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1913 ACGCGCTCTTTCTGAAAACATTCAACGTTCAGGGAGGCAAGGCCATGTACACAAAGAATT 1972
Query 2079 TGAGTTGCCTGATAACGCAGGGACAGTATGTTGTGCTCATATTGATCAAACTTGCTGTGC 2138
||||||||||||||| |||| |||| | ||||||||| || |||||||||||||||| ||
Sbjct 1973 TGAGTTGCCTGATAATGCAGCGACAATGTGTTGTGCTAATGTTGATCAAACTTGCTGCGC 2032
Query 2139 AAAAGTATCATCAATGGTTTTGACAGAATCTGTTCTTCGAGCTCTACCACTTGATATACC 2198
||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2033 AAAAGCATCATCAATGGTTTTGCCAGAATCTGTTCTTCGAGCTCTACCACTTAATATACC 2092
Query 2199 AAACCTTAGTGAAGAAAAGATTGCC-CCACAAGAAACCTGCAAAGAAGAAACCGTTCTAT 2257
|||||| |||||||| |||||| | ||||||||||||| |||||||||||||||| |||
Sbjct 2093 AAACCTCAGTGAAGACAAGATT-CAACCACAAGAAACCTCCAAAGAAGAAACCGTTTTAT 2151
Query 2258 TAGAAGATCCAAC--A-------GCTATGAAGCAGCCAAACTTATCAGTTGAACCAGAGA 2308
|||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 2152 TAGAAGATCCAATTGAAAAAATAGCTATCAAGCAGCCAAACTTATCAGTTGAACCAGAGA 2211
Query 2309 TAGTAGAGGCTGACACTCGAAAAGATAAAAAAGGAAGGTTACCTGTTGACGCCATCTCAC 2368
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2212 TAGTAGAGGCTGACACTCGAAAAGATAAAAAAGGAAGGTTACCTGTTGACGCTGTCTCGC 2271
Query 2369 CTTACTTGACTATTGAACCTTCTTTGGCATCAGATTGGCTGGAGGTCTCATGGAATGAAT 2428
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 CTTACTTGACTATTGAGCCTTCTTTGGCATCAGATTGGCTGGAGGTCTCATGGAATGAAT 2331
Query 2429 TACATATCAAAGAGCGTGTGGGTGCTGGATCATTTGGAACTGTTCATCGTGCTGAGTGGC 2488
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 TGCATATCAAAGAGCGTGTGGGTGCTGGATCATTTGGAACTGTTCATCGTGCTGAGTGGC 2391
Query 2489 ATGGATCAGATGTTGCTGTCAAGATTTTGTCTATTCAAGATTTCCATGATGACCAATTCA 2548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2392 ATGGATCAGATGTTGCTGTCAAGATTTTGTCTATTCAAGATTTCCATGATGACCAATTCA 2451
Query 2549 GAGAATTTCTCAGAGAGGTATGTAAGCAAGCGGTTGCTATAATGAAACGTGTTCGTCACC 2608
||||||||||||||||||| || ||| | | | ||||||||||||||||||
Sbjct 2452 GAGAATTTCTCAGAGAGGT-TG----CAA----T----A-A-TGAAACGTGTTCGTCACC 2496
Query 2609 CAAATGTTGTTCTCTTCATGGGTGCTGTGACAGAGCGACCCCGGTTATCAATAATAACAG 2668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 CAAATGTTGTTCTCTTCATGGGTGCTGTGACAGAGCGACCCCGGTTATCAATAATAACAG 2556
Query 2669 AATATTTGCCAAGAGGCAGTCTTTTTCGCCTTATCCATAGGCCAGCTTCTGGGGAGTTGC 2728
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2557 AATATTTGCCTAGGGGCAGTCTATTTCGCCTTATCCATAGGCCAGCTTCTGGGGAGTTGC 2616
Query 2729 TAGATCAGAGGAGGAGGCTACGTATGGCATTGGATGTGG--------C---C--A--A-G 2772
||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 2617 TAGATCAGAGGAGGAGGCTACGTATGGCATTGGATGTGGTTTGTGGTCTTTCCCATTATG 2676
Query 2773 ----GGG-CTCAACTACCTACACTGTCTTAATCCTCCTGTAGTGCATTGGGACCTGAAAT 2827
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2677 CCAAGGGGCTCAACTACCTACACTGTCTTAATCCTCCTGTAGTGCATTGGGACCTGAAAT 2736
Query 2828 CTCCAAATCTACTGGTTGATAAGAACTGGACAGTGAAGGTTTGCGATTTTGGACTTTCAA 2887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2737 CTCCAAATCTACTGGTTGATAAGAACTGGACAGTGAAGGTTTGCGATTTTGGACTTTCAA 2796
Query 2888 GATTCAAGGCAAACACTTTCATACCATCAAAATCTGTTGCAGGAACACCTGAGTGGATGG 2947
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2797 GATTCAAGGCAAACACTTTCATACCATCAAAATCAGTTGCAGGAACACCTGAGTGGATGG 2856
Query 2948 CTCCAGAGTTTCTTAGAGGGGAACCGACAAACGAGAAATCAGATGTTTACAGTTTCGGAG 3007
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 2857 CTCCAGAGTTTCTTAGAGGGGAGCCAACAAACGAGAAATCAGATGTTTACAGTTTTGGAG 2916
Query 3008 TAGT-CTTATGGGAGTTGATTACTTTGCAACAGCCTTGGAATGGACTCAGTCCTGCTCAG 3066
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2917 TAGTTCT-ATGGGAGTTGATTACTTTGCAACAGCCTTGGAATGGACTCAGTCCTGCTCAG 2975
Query 3067 GTGGTTGGAGCAGTTGCATTCCAGAACAGGCGGCTTATAATTCCTCCCAACACCTCTCCG 3126
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2976 GTGGTTGGAGCAGTTGCATTCCAAAACAGGCGGCTTATAATTCCTCCCAATACCTCTCCG 3035
Query 3127 GTTTTGGTATCTCTAATGGAAGCTTGCTGGGCAGATGAGCCGTCTCAGCGGCCAGCATTT 3186
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3036 GTTTTGGTATCTCTAATGGAAGCTTGCTGGGCAGATGAGCCGGCTCAGCGGCCAGCATTT 3095
Query 3187 GGTAGTATAGTGGACACATTGAAGAAGCTACTAAAGTCTCCGGTGCAGCTGATCCAAATG 3246
| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3096 AGCGGCATAGTGAACACATTGAAGAAGCTACTAAAGTCTCCAGTGCAGCTGATCCAAATG 3155
Query 3247 GGTGGAGACAAAGGGGTAATTCCAACTAAATCAGCTCCCATACTATAGTATAAA-TACTT 3305
|| |||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||
Sbjct 3156 GGCGGAGACAAAGGGGTAATTCCAACTAAATGAGCTCCCATTCTATAGT-TAAAATACTT 3214
Query 3306 AACTTTTACGGTGCTAACAGAAACACTGTAGGTGCTTTGCGTTGATTAGCTCCTGAATTC 3365
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3215 AACTTTTACGGTACTAACAGAAACACTGTAGGTGCTTTGCGTTGATTAGCTCCTGAATTT 3274
Query 3366 GATTTTAAATTAGAAAAATCAATGAGACGAGAGAAGCCTTACCTGGAAGAATGGAAGGCt 3425
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 3275 GATTTTAAATTAGAAAAATCAATGAGACGAGAG--GCCTTGCCTGGAAGAATGGAAGGCT 3332
Query 3426 tttttatttttattttggtttttgtttgtatagtataggttttatatGCTGTTACTT 3482
||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 3333 TTTTTTTTTTTTTTTTGGTTTTTGTTTGTATAGTATAGTTTTTATATGCTCTTACTT 3389
Score = 141 bits (76), Expect = 3e-32
Identities = 93/101 (92%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 117 AAACCACCGTTAGTTTTTCTTTCCCGGTGATACGTTTAGA-TAGCTTCtttttttttCCG 175
||||||||| |||||||| ||| ||||||||||||||||| || |||||| |||| ||||
Sbjct 69 AAACCACCG-TAGTTTTTGTTTTCCGGTGATACGTTTAGATTATCTTCTTCTTTTCTCCG 127
Query 176 GTGGTTAACGTTGACGATTGACTACTTCAATTCTAAACGGA 216
|||||| ||||||||||||||||||||||||||||||||||
Sbjct 128 GTGGTTTACGTTGACGATTGACTACTTCAATTCTAAACGGA 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133049275208
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5