BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24490.1
Length=2427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492396 jgi|Araly1|492396|fgenesh2_kg.7__1829__AT4G24490.2 3415 0.0
Ahg928634 jgi|Araly1|928634|scaffold_301091.1 1639 0.0
Ahg493802 jgi|Araly1|493802|fgenesh2_kg.7__3235__AT5G41820.1 830 0.0
> Ahg492396 jgi|Araly1|492396|fgenesh2_kg.7__1829__AT4G24490.2
Length=2318
Score = 3415 bits (1849), Expect = 0.0
Identities = 2083/2195 (95%), Gaps = 19/2195 (1%)
Strand=Plus/Plus
Query 86 ACACTGTCGCATCTCTCACAGTCGTCGGAGAAGAATGCACGGTCGTCCAAGGAATGCTTC 145
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 134 ACACTCTCGCATCTCTCACATTCGTCGGAGAAGAATGCACGGTCGTCCAAGGAAGGCTTC 193
Query 146 TAAGCCAGAAGAGGAAGCAGCTTCAGCTGCTAAAGCTGTTCAGCTTCGCTCTCTCCAGTC 205
|||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 194 TAAGCCAGAAGAGGAAGCTGCTTCAGCTGCTAAAGCGGTTAAGCTTCGGTCTCTCCAGTC 253
Query 206 TCAGTTTATGACGAATCATCACGATAAAATTTATACCAATGAAGCTATTGAGTTAAGCAC 265
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 254 TCAGTTTATGACTAATCATCACGATAAAATATATACCAATGAAGCTATTGAGTTAAGTAC 313
Query 266 GAAGCTTCTAGAAATCAATCCGGAGGCGTACACCGCATGGAACTACCGGAAGCTTGCTGT 325
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 314 GAAGCTTCTCGAAATCAATCCGGAGGCGTACACGGCTTGGAACTACCGGAAGCTTGCTGT 373
Query 326 GGAGGATCGCCTTGCCAGAATTGAGCCTGATCCAAACTTGGTCAGCGCAATTCTTGATGA 385
||||||| ||||| ||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 374 GGAGGATTGCCTTTCCAGAATTGAGTCTGATCCAAACTTGGTCAACTCAATTCTTGATGA 433
Query 386 AGAACTCAGAGTGGTAGAAAGTGCTTTGAGGCAGAATTTCAAGTCCTATGGTGCTTGGCA 445
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 434 AGAACTCAGAGTGGTAGAAAGTGCTTTGAGGCAGAATTTCAAGTCATATGGTGCTTGGCA 493
Query 446 TCATCGAAAGTGGGTTTTGAGTAAAGGGCATTCATCCGTAGGGAATGAATTGAGACTTTT 505
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 494 TCATCGAAAGTGGGTTTTGAGTAAAGGGCATTCCTCCATAGGGGATGAATTGAAACTTTT 553
Query 506 GGAAAAATTCCAGAAGCTGGATTCCAGAAATTTTCATGCTTGGAACTATCGCAGGTTTGT 565
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GGACAAATTCCAGAGGCTGGATTCCAGAAATTTTCATGCTTGGAACTATCGCAGGTTTGT 613
Query 566 TGTAGAGCTAACCAACAGATCAGAACAGGATGAGTTGCAGTATACAGATGATATGATCAA 625
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 614 TGTAGAGCTAACCAACAGGTCAGAACAGGATGAGTTGCACTATACAGATGATATGATCAA 673
Query 626 TAACAATTTCAGCAACTATTCTGCATGGCATAATCGTAGTGTACTTCTATCAAGTTTG-T 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 674 TAACAATTTCAGCAACTATTCTGCATGGCATAATCGTAGTGTACTTCTATCAAGTTTGCT 733
Query 685 TGGCACAAAATGCTGATGGGTTTATGCCAAATATAAA-GATTCCTGAGGAATATGACTTT 743
| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||
Sbjct 734 T-GCACAAAATGCTGATGGGTTTATGCCAAAT-GAAAGGATTCCTGACGAATATGACCTT 791
Query 744 GTACATTCGGCTATTTTTACGGAACCAGATGACCAAAGTGGCTGGTTTTATCATCTTTGG 803
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 792 GTACATTCAGCTATTTTTACGGACCCAGATGACCAAAGTGGCTGGTTTTATCATCTTTGG 851
Query 804 CTTCTTGACCAAACTCTTAATGTGGAGACTCCTCTTCTCACTTCCT-CATGGCCTTCACA 862
|||||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 852 CTTCTTGATCAAACTCTTAATGTGGAGACTCCTCTTCTCACTT-CTGCATGGCCTTCCCA 910
Query 863 TGGTTCAAGTATCATTCTGTCTGGAGCTGGGTGCTTGAGTGGCTCTTCATCTATGTTCAC 922
|||||||| ||||| ||| ||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 911 TGGTTCAACTATCAGTCTATCTGGAGCTGGGTGCTTGAATGGCTCTTCTTCTAAGTTCAC 970
Query 923 TACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTGTTGG 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTGTTGG 1030
Query 983 TGGAGTAAGCTCATCTACTGTTACAATTGATTCTGAACTAAAAGGAAACGAGGG-CCTTG 1041
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |
Sbjct 1031 TGGAGTAAGCTCATCTACTGTTACAACTGATTCTGAACTAAAAGGAAACG-GGGACCTGG 1089
Query 1042 TTTGGGAACCAATTCCGAACAAAAATTCTCAGGTGTCCTGTGTATGGGTTGCTCGTCTGA 1101
|||||||||||||| || | |||||||||||||||||||||||||||||| ||| |||||
Sbjct 1090 TTTGGGAACCAATTTCGTATAAAAATTCTCAGGTGTCCTGTGTATGGGTTACTCATCTGA 1149
Query 1102 AATATGTCAGTTCAGATCCTTGCGAATACAAAGTGAAGATCAGAGTTGGGAACTCTCCAG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AATATGTCAGTTCAGATCCTTGCGAATACAAAGTGAAGATCAGAGTTGGGAACTCTCCAG 1209
Query 1162 GAATCGTTTCTTCCAGAGGATATAACTTCAACGCACCTTATGAGTTTGTCTTTACAGCCC 1221
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1210 GAATCGTTTCTTCCAGAGGACATAACTTCAGCGCACCTTATGAGTTTGTCTTTACAGCCC 1269
Query 1222 ATGTTCATGATACCGTCGAAGATTCTCAAGAAGGCATTGTTTCATGGACGGATGGATTTG 1281
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1270 ATGTTCATGATACCGTCAAAGATTCTCAAGAAGGCATTGTTTCATGGACGGATGGTTTTG 1329
Query 1282 ATATTTGGGATGCGAAGTCAAAGGATTTGAATTCTCTTGTCACCTTGGATCGGTTAAATG 1341
||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| | |
Sbjct 1330 ATATTTGGGATGCGAAGTCCAAGGATTTGAACTCTCTTATCACCTTGGATCGGTTAGAGG 1389
Query 1342 CTGAGATGGATTTTAAATGGCGTCAGGAAGCTATAGATTCTGAGGTTGAATGTTTCGGTA 1401
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CTGAGATAGATTTTAAATGGCGTCAGGAAGCTATAGATTCTGAGGTTGAATGTTTCGGTA 1449
Query 1402 TACTGCCTGACAGCAAAATTGGAAAGCTCACTCTTGCAAGGCTTTTGATGGCTCGTGAAG 1461
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TACTGTCTGACAGCAAAATTGGAAAGCTCACTCTTGCAAGGCTTTTGATGGCTCGTGAAG 1509
Query 1462 CTATGGTATCGGATGATGCTGTCAAGGGTGTTCACTATGAAGAAATCCTTCAGCTGTATA 1521
|||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 1510 CTATGGTATCGGATGATGCTGTTAAGGGTGTTCGCTATGAAGAAATCCTCCAGCTGTATA 1569
Query 1522 ACGATTTGATGGCGCTGGATTCTTCACACTACCAGTACTACAAGGATGAGCACAGCAAAG 1581
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1570 ACGATTTGATGGCGCTGGATTCTTCACATTACCAGTACTACAAGGATGAGCACAGCGTAG 1629
Query 1582 CTTTTCTCCACAAGGTGACTTCAAGCAGTGAATCTTTGTCAAGACACCT-TTTGCGATAT 1640
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 1630 CTTTTCTCCACAAGGTGACTTCAAGCAGTGAATCCTTGTCAAGACACCTCTTT-CGATAT 1688
Query 1641 AGGGATATGAACAATCTTGTATGTCTACGGCTAAATAACTTATCACTATCTCGGATAGCC 1700
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 AGGGGTATGAACAATCTTGTATGTCTACGGCTAAATAACTTATCACTATCTCGGATAGCC 1748
Query 1701 TCTGTTGAGAAGTTGCTGTTTGTCCAAATGTTAGACCTTAGTCACAATGAGCTTCATTCC 1760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 TCTGTTGAGAAGTTGCTGTTTGTCCAAATGTTAGACCTTAGTCACAATGAGCTTCATTCA 1808
Query 1761 ACTGAAGGATTGGAGGCAATGCAACTTCTCTCTTGTCTAAATCTGAGTCACAACAGAATC 1820
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1809 ACTGAAGGATTAGAGGCAATGCAACTTCTCTCTTGCCTAAATCTGAGTCACAACAGAATC 1868
Query 1821 CGGAGTTTTTCAGCGCTGGACTCTCTAAGACATGTGAAGCAGCTGAAAGTGTTGGATGTT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 CGGAGTTTTTCAGCGCTGGACTCTCTAAGACATGTGAAGCAGCTGAAAGTGTTGGATGTT 1928
Query 1881 TCACATAACCACATTGGCAAGCACTCAGTGGACACAACTA-GATACCTTTGTTCTTCACC 1939
||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1929 TCACACAACCACATTGGCAAGCACTCAGTGGACACAAC-ACGGTACCTTTGTTCTTCACC 1987
Query 1940 GCTCTCTAATTCAGAGTTGG-GTCAGGATGATGTAGGAAAACAGAATCCTGGATTGGTTA 1998
||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||| |
Sbjct 1988 GCTCTCTAATTCAGAGT-GGAGTCAGGATGATGTAGGAAGACAGAATCCTGGGTTGGTCA 2046
Query 1999 CGAAGTACTGGGATGCGTATTGCGTGTTAACAGATTTGAATCTGAAACAGTTAGATATAG 2058
| || |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 2047 CCAAATACTGGGATGCGTATTTCGTCCTAAGAGATTTGAATCTGAAACAGTTAGATATAG 2106
Query 2059 CAGGAAATGAAATTGCAGGGGAGGAATTCAGCTCTTTTGTCCTCCAGGTTGTCCCAAAGC 2118
|||||||||||||| ||||| | |||||||||||||||||||||||| |||| |||||||
Sbjct 2107 CAGGAAATGAAATTTCAGGGAACGAATTCAGCTCTTTTGTCCTCCAGATTGTGCCAAAGC 2166
Query 2119 TTGTATGGCTCGATGGCCAGAAGAAACTTGGGAATTAGATCATAGGCCAAGTTTTTGTTT 2178
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2167 TTGTATGGCTCGATGGCCAGAA-A--CTTGGGAATTAGATCATAGGCCAAGTTTTTGTTT 2223
Query 2179 ACTTTACCTTTCGATCATCAAATTCCCAAAGCAATTTAGGTTATCTTGATGATCTTTGTT 2238
|||||| |||| ||||||||||| ||||||||||||| |||| |||||||||| ||||||
Sbjct 2224 ACTTTATCTTTAGATCATCAAATCCCCAAAGCAATTTGGGTTCTCTTGATGATGTTTGTT 2283
Query 2239 GTTGTGATAT-T-TCTTAGCAATCTTATTGATGAC 2271
||||||||| | ||||| ||||||||||||||||
Sbjct 2284 GTTGTGATACATGTCTTAACAATCTTATTGATGAC 2318
> Ahg928634 jgi|Araly1|928634|scaffold_301091.1
Length=2081
Score = 1639 bits (887), Expect = 0.0
Identities = 1715/2095 (82%), Gaps = 136/2095 (6%)
Strand=Plus/Plus
Query 114 AGAAGAATGCACGGTCGTCCAAGGAA---TGCTTCTAAGCCAGAAGAGGAAGCAGCTTCA 170
|||||||||||||||||||| ||||| ||||| ||||| | ||||| | ||
Sbjct 15 AGAAGAATGCACGGTCGTCCGAGGAAGGCGGCTTCGAAGCC-----A-GAAGC--C-TCG 65
Query 171 GCTGCTAAAG-CTGTTCAGCTTCGCTCTCTCCAGTCTCAGTTTATGACGAATCATCA-CG 228
|||||||||| || | |||| || || ||||||| ||||| ||| | ||||| || ||
Sbjct 66 GCTGCTAAAGCCT-TAAAGCTCCGGTCGGTCCAGTCCCAGTTCATGTCCAATCACCATCG 124
Query 229 ATAAAATTTATACCA-ATGAAGCTATTGAGTTAAGCACGAAGCTTCTAGAAATCAATCCG 287
| || ||||| | || | ||||| ||| | |||||| |||||||||||| ||||||||||
Sbjct 125 A-AAGATTTACA-CACAGGAAGCAATTCAATTAAGCGCGAAGCTTCTAGCAATCAATCCG 182
Query 288 GAGGCGTACACCGCATGGAACTACCGGAAGCTTGCTGTGGAGGATCGCCTTGCCAGAATT 347
||||| ||||| || |||||||| |||||||| || || |||||| |||| || ||||
Sbjct 183 GAGGCCTACACGGCTTGGAACTATCGGAAGCTCGCCGTCGAGGATAACCTTTCCCGAATC 242
Query 348 GA-G-C-CTGATCCAAACTTGGTCAGCGCAATTCTTGATGAAGAAC-TCAGAGTGGTAGA 403
|| | | ||||||||| |||||||| | ||||||| ||||||||| | | ||| ||||
Sbjct 243 GACGACTCTGATCCAAGCTTGGTCAACTCAATTCTCAATGAAGAACTTGA-AGTCGTAGC 301
Query 404 AAGTG-CTTTGAGGCAG-AATTTCAAGTCCTATGGTGCTTGGCATCATCGAAAGTGGGTT 461
|| || | || ||| | ||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 302 AATTGCCCTT-CGGC-GAAATCTCAAGTCCTATGGGGCTTGGTATCATCGAAAGTGGGTT 359
Query 462 TTGAGTAAAGGGCATTCATCCGTAGGGAATGAATTG-AGACTTTTGGAA-AAAT-TCCAG 518
||||||||||||||||| ||| ||| || |||||| | ||||||| || |||| || |
Sbjct 360 TTGAGTAAAGGGCATTCCTCCTTAGAAAAGGAATTGCA-ACTTTTG-AATAAATATCAA- 416
Query 519 AAGCTGGAT-TCCAGAAATTTTCATGCTTGGAACTATCGCAGGTTTGT-TGTAGAGCTAA 576
||||| ||| || || || ||||| ||||||||||||||||||||||| | | |||||||
Sbjct 417 AAGCTCGATCTC-AGGAACTTTCACGCTTGGAACTATCGCAGGTTTGTCT-TGGAGCTAA 474
Query 577 CCAACA-GATCAGAACAGGATGAGTTGCAGTATACAGA-TGATATGATCAATAACA--A- 631
|||| | | || |||||||||||||||| |||||| | ||||||||||||| | |
Sbjct 475 CCAAGACGC-CACAACAGGATGAGTTGCACTATACA-ACTGATATGATCAATGATGTTAG 532
Query 632 TTTCAGCAACTATTCTGCATGGCATAATCGTAGTGTACTTCTATCAAGTTT-GTTGGCAC 690
|||||||||||||||||| ||||| |||||||||| |||||| |||||||| || | ||
Sbjct 533 TTTCAGCAACTATTCTGCGTGGCACAATCGTAGTGAACTTCTTTCAAGTTTAGTCG-CAA 591
Query 691 AAAATGCTGATGGGTTTATGCCAAATATAAA-GATTCCT-GAGGAAT-ATGACTT-TGTA 746
|||| |||||||||||||||||||| ||| ||||| | | | ||| | || || ||||
Sbjct 592 AAAAGGCTGATGGGTTTATGCCAAAGG-AAACGATTCGTCGTG-AATTA-GA-TTATGTA 647
Query 747 CATTCGGCTATTTTTACGGAACCA-GATGACCAAAGTGGCT-GGTTTTATCATCTTTGGC 804
||| |||||||||||||| | | ||||||||||||| || |||||||| |||||||||
Sbjct 648 CATAATGCTATTTTTACGGA-CGAAGATGACCAAAGTG-CTTGGTTTTATTATCTTTGGC 705
Query 805 TTCTTGACCAAACTCTTAATGTGGAGACTCCTCTTCTCACTTCCTCATGGCCTTCACATG 864
||||||| |||||| |||| ||||||||||||||| ||||||||| ||||||||| |||
Sbjct 706 TTCTTGATCAAACTGTTAAAATGGAGACTCCTCTTCGCACTTCCTCGTGGCCTTCAGATG 765
Query 865 GTTCAAGTATCATTCTGTCTGGAGCTGGGTGCTTGAGTGGCTCTTCATCTA-T-----GT 918
|||| | |||||| || |||||| |||||||||| | ||||||||| ||| | ||
Sbjct 766 GTTCCATTATCATCCTATCTGGACCTGGGTGCTTCAATGGCTCTTCTTCTTCTTCTAAGT 825
Query 919 TCACTACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTG 978
|||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 826 TCACTACTTTCTGTTCCGAGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCG 885
Query 979 TTGGTGGAGTAAGCTCATCTACTGTTACAATTGATTCTGAACTAAAAGGAAA-CGAGGGC 1037
| ||||||||||||| ||||||||||| ||||||||||||||| ||||||| | ||| |
Sbjct 886 TCAGTGGAGTAAGCTCGTCTACTGTTACTATTGATTCTGAACTACAAGGAAATC-AGGAC 944
Query 1038 CTTGTTTGGGAACCAATTCCGAACAAAAATTCTCAGGTGTCCTGTGTATGGGTTGCTCGT 1097
||||||||||||||| || || | ||||| ||||| |||| ||||||||||||||||||
Sbjct 945 CTTGTTTGGGAACCAGTTTCGGATAAAAACTCTCAACTGTCTTGTGTATGGGTTGCTCGT 1004
Query 1098 CTGAAATATGTCAGTTCAGATCCTTGC----G-AAT-A---CAAAGTGAAGATCAGAGTT 1148
||||||| || |||| | || |||||| | || | |||||||||| |||| ||
Sbjct 1005 CTGAAATTTGACAGTGCTGAACCTTGCTTTCGCAAGGAAAACAAAGTGAAGGTCAGCCTT 1064
Query 1149 GGGAACTCTCCAGGAATCGTTTCTTCCAGAGGATATAACTTCAACGCACCTTATGAGTTT 1208
||||| |||| |||||| ||||||||||| |||| | |||| | ||| ||||||||||||
Sbjct 1065 GGGAAGTCTCAAGGAATTGTTTCTTCCAGGGGATGTTACTTGAGCGCTCCTTATGAGTTT 1124
Query 1209 GTCTTTACAGCCCATGTTCATGATACCGTCGAAGATTCTCAAGAAGGCATTGTTTCATGG 1268
|| ||||||| ||| ||||||| || |||| ||| | |||||||||||||||| |||
Sbjct 1125 GTATTTACAGTGCATATTCATGACACTGTCGGAGAGCCACAAGAAGGCATTGTTTTGTGG 1184
Query 1269 ACGGATGGATTTGATATTTGGGATGCGA-AGTCAAAGGATTTGAATTCTCTTGTCACCTT 1327
|||||||| ||||| | ||||||||| | |||| |||||||||||||||||| ||||||
Sbjct 1185 ACGGATGGTTTTGACAATTGGGATGC-ACAGTCGAAGGATTTGAATTCTCTTATCACCTC 1243
Query 1328 GGATCGGTTAAATGCTGAGAT-GGATTTTAAATGGCGTCAGGAAGCTATA--GATTCTGA 1384
||||| |||||| ||||| | || |||| | |||||| || |||||||| ||| ||
Sbjct 1244 GGATCAGTTAAACGCTGATACAGG-TTTTGAGTGGCGTAAGCAAGCTATAAAGATA--GA 1300
Query 1385 GGTTGAATGTTT-CG-GTATACTGCCTGACAGCAAAATTGGAAAGCTCACTCTTGCAAGG 1442
| |||||||||| || | || ||| |||||||||| |||||||||||| ||||||||||
Sbjct 1301 GATTGAATGTTTTCGTG-ATT-TGCATGACAGCAAATTTGGAAAGCTCATTCTTGCAAGG 1358
Query 1443 CTTTTGATGGCTCGTG-AAGCTATGGTATCGGATGATGCTGTCAAGGGTGTTCACTATGA 1501
|||||||||||| | | || ||||| | |||||||||||||| |||||||| || ||| |
Sbjct 1359 CTTTTGATGGCT-GAGGAAACTATGATCTCGGATGATGCTGTTAAGGGTGTCCATTAT-A 1416
Query 1502 A-GAAATCCTTCAGCTGTATAACGATTTGATGGCGCTGGATTCTTCACACT-ACCAGTAC 1559
| |||||||| ||||||||||| ||| ||||||| || ||||||| || | ||||||||
Sbjct 1417 ATGAAATCCTCCAGCTGTATAAGGATCTGATGGCTCTTAATTCTTCGCA-TGACCAGTAC 1475
Query 1560 TACAAGGATGAGCACAGCAAAGCTTTTCTCCACAAGGTGACTTCAAGCAGTGAATCTTTG 1619
|||||||||||||||||| |||| |||||||||||||||||||||| | ||||| ||
Sbjct 1476 TACAAGGATGAGCACAGCGTAGCTCTTCTCCACAAGGTGACTTCAAGTACCGAATCCCTG 1535
Query 1620 TCAAGACACCT-TTTGC-GATATAGGGATATGAACAATCTTGTATGTCTACGGCTAAATA 1677
|| |||| ||| ||| | | || ||| ||||||||||| ||||||||||| |||| ||||
Sbjct 1536 TCCAGACGCCTCTTT-CTG-TACAGGAATATGAACAATATTGTATGTCTAAGGCTCAATA 1593
Query 1678 ACTTATCACTATCTCGGATAGCCTCTGTTGAGAAGTTGCTGTTTGTCCAAATGTTAGACC 1737
||||| || |||||||||||||| |||| |||||||| || ||||||||||||||||| |
Sbjct 1594 ACTTAACATTATCTCGGATAGCCGCTGTCGAGAAGTTTCTATTTGTCCAAATGTTAGATC 1653
Query 1738 TTAGTCACAATGAGCTTCATTCCACTGAAGGATTGGAGGCAATGCAACTTCTCTCTTGTC 1797
| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||| |
Sbjct 1654 TCAGTCACAATGAGCTTCATTCCGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCC 1713
Query 1798 TAAATCTGAGTCACAACAGAATCCGGAGTTTTTCAGCGCTGGACTCTCTAAGACATGTGA 1857
|||||||| |||||||||||||| |||| |||||||| || || |||||||||||| |||
Sbjct 1714 TAAATCTGTGTCACAACAGAATCAGGAGCTTTTCAGCCCTTGATTCTCTAAGACATCTGA 1773
Query 1858 AGCAGCTGAAAGTGTTGGATGTTTCACATAACCACATTGGC---AAGCACTCAGTGGACA 1914
||||||| | |||||||||||||||||||||| |||| ||| |||||| |||||||||
Sbjct 1774 AGCAGCTTAGAGTGTTGGATGTTTCACATAACGACATGGGCGGCAAGCACCCAGTGGACA 1833
Query 1915 CAACTAGATACCTTTGTTCTTCACCGCTCTCTAATTCAGAGTTGGGTCAGGATGATGTAG 1974
|||| || ||||| ||||||| |||||||||||||| | | || | | || | |
Sbjct 1834 CAACAAGGTACCTCTGTTCTTGGCCGCTCTCTAATTC-G-GCTG----A--A--AT-T-G 1881
Query 1975 GAAAACAGAAT-CCTGGATTGGTTACGAAGTACTGGGATGCGTATT-GCGTG-TTAACAG 2031
||| |||| | ||| | | | | || |||||||||||||||| | ||| ||| ||
Sbjct 1882 GAAGACAGG-TGCCT---T-G-T-A--AA-TACTGGGATGCGTATTTG-GTGCTTAG-AG 1929
Query 2032 ATTTGAAT---CTGAAACAGTTAGATATAGCAGGA---AATGA---AATTGCAGGGGAGG 2082
||||||| ||||| |||||||||||| | || || || |||||||||||| |
Sbjct 1930 ATTTGAAGAAACTGAAGCAGTTAGATATAATAAGAGGCAACGACCTAATTGCAGGGGAAG 1989
Query 2083 AATTCAGCTCTTTTGTCCTCCAGGTTGTCCCAAAGCTTGTATGGCTCGATGGCCA 2137
| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||
Sbjct 1990 AGTTCAGCTCCTTTGTCCGCCAGGTTCTTCCAAAGCTTGTATGGCTTGATGGCCA 2044
> Ahg493802 jgi|Araly1|493802|fgenesh2_kg.7__3235__AT5G41820.1
Length=2028
Score = 830 bits (449), Expect = 0.0
Identities = 1016/1271 (80%), Gaps = 113/1271 (9%)
Strand=Plus/Plus
Query 919 TCACTACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTG 978
|||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 803 TCACTACTTTCTGTTCCGAGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCG 862
Query 979 TTGGTGGAGTAAGCTCATCTACTGTTACAATTGATTCTGAACTAAAAGGAAACGAGGGCC 1038
| ||||||| ||||| ||||||||||| |||||||||||||| |||| || |||| |
Sbjct 863 TCAGTGGAGTTAGCTCGTCTACTGTTACTATTGATTCTGAACTCAAAGCCAATGAGGATC 922
Query 1039 TTGTTTGGGAACCA-ATTCCG--AACAAAAATTCTCAGGT-G--TCCTGTGTATGGGTTG 1092
|||||||||||||| ||| | || || || ||||| || | || |||||||||||||
Sbjct 923 TTGTTTGGGAACCAGTTTCGGATAATAAGAACTCTCAAGTGGACTCTTGTGTATGGGTTG 982
Query 1093 CTCGTCTGAAATATGTCAGTTCA-GATCCTTGCGAATA--C-AAAGTGAAGATCAGAGT- 1147
||| |||||||| || |||| | || |||||| || | ||| ||| | || |||
Sbjct 983 CTCATCTGAAATTTGACAGTAGAGGA-CCTTGC-TTTAGTCGCAAG-GAA-AACAAAGTC 1038
Query 1148 -TGG-GA-ACTCTCCAGGAATCGTTTCTTCCA-GAGGATATAACTTCAACGCACCTTATG 1203
|| | || | |||||| |||||||||| | |||| |||||| | | | |||||||
Sbjct 1039 AAGGTCAGCCT-TGGAGGAATTGTTTCTTCCATG-GGATGTAACTTGAGCACTCCTTATG 1096
Query 1204 AGTTTGTCTTTACAGCCCATGTTCATGATACCGTCGAAGA-T--TCTCAAGAAGGCATTG 1260
||||||| ||||||| | || | | || || | ||| | || ||| |||||||||
Sbjct 1097 AGTTTGTATTTACAGTAC-TG--C---ACACTGTTGGAGAGTCGTCACAACAAGGCATTG 1150
Query 1261 TTTCATGGACGGATGGATTTGATATTTGGGATG-CG-A-AGTCAAAGGATTTGAATTCTC 1317
|||||||||||||||| ||| | | |||||||| | | |||| |||||||||||||||
Sbjct 1151 TTTCATGGACGGATGGTTTTAACAATTGGGATGATGCACAGTCGAAGGATTTGAATTCT- 1209
Query 1318 TTGTCACCTTGGATCGGTTAAATGCTGA-GATGGATTTTAAATGGCGTCAGGAAGCTAT- 1375
|| | | | | | ||||| ||||| | || |||| | |||||| ||||||||||
Sbjct 1210 TT-T-A---TCG--C-CTTAAACGCTGATG-CGGGTTTTGAGTGGCGTAAGGAAGCTATA 1260
Query 1376 -AGATTCTGAGGTTGAAT-GT-TTCGGT-ATACTGCCTGACAGCAAAATTGGAAAGCTCA 1431
||| | ||| ||| || | ||| || || |||||||||||||| ||||||||||||
Sbjct 1261 AAGA-T-AGAGATTG-ATCATCTTC-GTAAT-TTGCCTGACAGCAAATTTGGAAAGCTCA 1315
Query 1432 CTCTTGCAAGGCTTTTGATGGCTCG-TGAAGCTATGGTATCGGATGATGCTGTCAAGGGT 1490
|||||||||||||||||||||| | ||| ||||| | |||||||||||||| || |||
Sbjct 1316 TTCTTGCAAGGCTTTTGATGGCT-GAGGAAACTATGATCTCGGATGATGCTGTTAAAGGT 1374
Query 1491 GTT-CACTATGA-AGAAATCCTTCAGCTGTATAACGATTTGATGGCGCTGGATTCTTCAC 1548
|| || ||| | ||||||||| ||||| ||||||||| | || || || ||||| | |
Sbjct 1375 -TTCCATTAT-ACAGAAATCCTCCAGCTCTATAACGATCTCATTGCCCTTGATTCCTGGC 1432
Query 1549 ACT-ACCAGTACTACAAGGATGAGCACAGCAAAGCTTTTCTCCACAAGGTGACTTCAAGC 1607
| | |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1433 A-TGCCCAGTACTACAAGGATGAGCACAGTGTAGCTCTTCTCCACAAGGTGACTTCAAGC 1491
Query 1608 AGTGAATCTTTG-TCAAGACACCT-TTTGCGATATAGGGATATGAACAATCTTGTATGTC 1665
| |||||| || || |||||||| ||| || || ||| ||||||||||| |||||||||
Sbjct 1492 ACTGAATCCATGTTC-AGACACCTCTTT-CGGTACAGGAATATGAACAATATTGTATGTC 1549
Query 1666 -TACGGCTAAATAACTTATCACTATCTCGGATAGCCTCTGTTGAGAAGTTGCTGTTTGTC 1724
|| |||| ||||||||| ||||||||||||||||| | |||||||||||||| |||||
Sbjct 1550 TTA-GGCTCAATAACTTAACACTATCTCGGATAGCCGCGGTTGAGAAGTTGCTATTTGTT 1608
Query 1725 CAAATGTTAGACCTTAGTC-ACAATGAGCTTCATTCCA-CTGAAGGATTGGAGGCAATGC 1782
||||||||||| || || | ||||||||||||||| || |||||||||||||||| ||||
Sbjct 1609 CAAATGTTAGATCTCAG-CAACAATGAGCTTCATT-CAGCTGAAGGATTGGAGGCGATGC 1666
Query 1783 AACTTCTCTCTTGTCTAAATCTGAGTCACAACAGAATCCGGAGTTTTTCAGCGCTGGACT 1842
| ||||||| |||||||||||||||||||||||||||| |||| |||||||| || ||||
Sbjct 1667 AGCTTCTCTGTTGTCTAAATCTGAGTCACAACAGAATCAGGAGCTTTTCAGCACTTGACT 1726
Query 1843 CTCTAAGACATGTGAAGCAGCTGAAAGTGTTGGATGTTTCACATAACCACATTGGCA--- 1899
||||||||||| |||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct 1727 CTCTAAGACATCTGAAGCAGCTTAGAGTGTTGGATGTTTCACATAACCTCATCGGCGGGG 1786
Query 1900 AGCACTCAGTGGACACAACTAGATACCTTTGTTCTTCACCGCTCTCTAATTCAGAGTTGG 1959
||||| ||||||||||||| || |||||||||||||| |||||||||||||| | || |
Sbjct 1787 AGCACCCAGTGGACACAACAAGGTACCTTTGTTCTTCGCCGCTCTCTAATTCGG-GT-G- 1843
Query 1960 GTCAGGATGATGTAGGAAAACAGAAT-CCTGGATTGGTTACGAAGTACTGGGATGCGTAT 2018
| | || | |||| | || | ||| | | | | || |||||||||||||||
Sbjct 1844 ---A--A--AT-T-GGAAGAGAGG-TGCCT---T-G-T-A--AA-TACTGGGATGCGTAT 1884
Query 2019 T-GCGTG-TTAACAGATTTGA--AT-CTGAAACAGTTAGATAT-AGCAGGAAATGA---A 2069
| | ||| ||| |||||||| | ||||| ||||||||||| || ||| || || |
Sbjct 1885 TTG-GTGCTTAG-AGATTTGATGAAACTGAAGCAGTTAGATATTAG-AGGCAACGACCTA 1941
Query 2070 AT-TG--CAGGGGAGGAATTCAGCTCTTTTGTCCTCCAGGTTGTCCCAAAGCTTGTATGG 2126
|| | ||||||| || |||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1942 ATATTTTCAGGGGAAGAGTTCAGCTCTTTTGTCCGCCAGGTTGTGCCAAAGCTTGTATGG 2001
Query 2127 CTCGATGGCCA 2137
|| ||||||||
Sbjct 2002 CTTGATGGCCA 2012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91454678245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5