BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24500.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329212 jgi|Araly1|329212|fgenesh1_pm.C_scaffold_7001439 1400 0.0
> Ahg329212 jgi|Araly1|329212|fgenesh1_pm.C_scaffold_7001439
Length=963
Score = 1400 bits (758), Expect = 0.0
Identities = 896/962 (93%), Gaps = 11/962 (1%)
Strand=Plus/Plus
Query 74 ATGGAAGATTCAGAGAAAAGAAAACAGATGTTAAAAGCAATGCGAATGGAAGCTGCAGCG 133
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGAAGATTCAGAGAGAAGAAAACAAATGTTAAAAGCAATGCGAATGGAAGCTGCTGCA 60
Query 134 CAGAATG---ATGATGATGCTACTACAGGTACTGAAACATCTATGAGCACAGGTCACCTC 190
||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 61 CAGAATGATAATGATGATTCTACTACAGGTCCTGAAACATCTATGAACACAGGTCACCTC 120
Query 191 TCCAATCCATTGGCAGAGACATCCAATCACCAGCAGGATTCATTTGAAAC-GCAAAGGTT 249
|||||||| |||||||||||||||| |||||| ||||||||||||||||| | ||||||
Sbjct 121 TCCAATCCCTTGGCAGAGACATCCACTCACCACCAGGATTCATTTGAAACATC-AAGGTT 179
Query 250 TGATTATTATACCGATCCCATGGCTGCTTATTCTAGTTTCAAGAAAAACAAGACCCCTAA 309
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATTATTATACCGACCCCATGTCTGCTTATTCTAGTTTCAAGAAAAACAAGACCCCTAA 239
Query 310 GCAACAATACATCTCATCTCCTAGTCATCAAGGAAGCTCTCCTGTACCACCTCAGTTTCC 369
|||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||
Sbjct 240 GCAACAATACATCTCATCTCCTTGTCATCAAGCAAGCTCTCCTGTACCGCCACAGTTTCC 299
Query 370 ACCATCAGTTCCTCCAGGATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGG 429
||||||||||||||||| || ||| ||||||||||||||||||| |||||||| || ||
Sbjct 300 GCCATCAGTTCCTCCAGGGTCGTTAGGTAGTGAGTATCAGGCACATACCAATCAGGGCGG 359
Query 430 CTTTCATGCAGCTCATTATGAACCAAGAGGGATGGCACATCTTTCACCCTCACACAGAGG 489
|||||| ||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct 360 CTTTCAAGCAGCTCATTATGAACCAAGAGGGATGTCACATCTTGCACCCCCATACAGAGG 419
Query 490 TCCACCCGCCGGTTGGAATAACAACTTTAGGCCTCCACCAGTTAACCATTCAGGTCCACC 549
| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 420 TTCACCCGCCAGTTGGAATAACAATTTTAGGCCTCCACCAGTTAACCATCCAGGTCCACC 479
Query 550 TCAATGGGTACCTCGCCCTTTTCCATTCTCTCAAGAAA-TGCCGAACATGGGGAATAATA 608
||||||||||||||||||||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 480 TCAATGGGTACCTCGCCCTTTTCCATTTTCTCAAGAAACT-CCGGACATGGGGAATAATA 538
Query 609 GATTTGGTGGTCGAGGCAGCTACAACAATACTC-CTCCACAGTTTTCCAATTATGGACGA 667
|||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 539 GATTTGGTGGTCAAGGCAGCTACAACAATAC-CGCTCCACATTTTTCCAATTATGGACGA 597
Query 668 CAAAATGCAAACTGGGGTGGAAACACGTATCCTAACTCAGGAAGAGGCAGAAGTCGAGGA 727
|||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 598 CAAAATGCAAACTGGGTTGGAAACACATATCCTAACTCAGGAAGAGGCGGAAGTCGAGGA 657
Query 728 CGCGGTATGAACACAAGCTTTGGGAGAGATGGAGGAAGAAGACCCATGGAACCAGGGGCA 787
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 658 CGCGGTATGAACACAAGCTTTGGTAGAGATGGAGGAAGAAGACCCATGGAACTAGGGGCA 717
Query 788 GAACGATTTTACTCCAACTCTATGGCTGAAGATCCATGGAAGCATCTTAAGCCAGTCTTA 847
||||||| ||||||||| || |||||||| |||||||||||| |||||||||||||| ||
Sbjct 718 GAACGATATTACTCCAATTCCATGGCTGATGATCCATGGAAGTATCTTAAGCCAGTCATA 777
Query 848 TGGAAGAATTGCTCAGATGCTTCGAGCAGCAGCTCAACAGGTCAAGCCTGGCTTCCCAAG 907
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 TGGAAGAGTTGCTCAGATGCTTCGAGCAGCAACTCAACAGGTCAAGCCTGGCTTCCCAAT 837
Query 908 TCTATAGCACCaaaaaaaTCTGTGACCTCAGAAGCTACCCACAAAACTAGCAGTAATCAG 967
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 838 TCTATAGCACCAAAAAAATCTGTGACCTCAGAAGCTACCCACAAACCTAGCAATAATCAG 897
Query 968 CAGAGCCTTGCTGAGTACCTTGCTGCTTCTCTAGATG-GTGCTACATGCGATGAGTCAAG 1026
|||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||
Sbjct 898 CAGAGCCTTGCTGAGTACCTCGCTGCATCTCTAGATGAG-GCTACATGCGATGAGTCAAG 956
Query 1027 CA 1028
||
Sbjct 957 CA 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5