BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24510.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492392 jgi|Araly1|492392|fgenesh2_kg.7__1825__AT4G24510.1 2032 0.0
> Ahg492392 jgi|Araly1|492392|fgenesh2_kg.7__1825__AT4G24510.1
Length=1450
Score = 2032 bits (1100), Expect = 0.0
Identities = 1353/1472 (92%), Gaps = 29/1472 (2%)
Strand=Plus/Plus
Query 1 AAAGACCCAAATCCCACCCACATTTAATGTTGCCGTCACGGAAACAGTTTTCCCAACTGT 60
||| |||||||||||||| ||||||||||||| |||||| ||||| ||| || |||||||
Sbjct 1 AAACACCCAAATCCCACCTACATTTAATGTTGTCGTCACCGAAACTGTTGTCTCAACTGT 60
Query 61 CCTAAATCAGTGATACCCATGCCTATTCTGAACTCAACTCTCTTTCGAAACTCAATCCTT 120
|||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||| |||
Sbjct 61 CCTAAACCAGTGATACCCATAACTATTCTGAACTCAACTTTCTTTCCAAACTCAATTCTT 120
Query 121 ATATAACACATCCCATTTAAGCCTATAAGCTACACATATCAGCTCTCTCACAAA-AATAA 179
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 121 ATATAACACATCCCATTTAAGCCTATAAGCTACACATATCAGCTCCCTCAGAAAGAA-AA 179
Query 180 AATGGAGGGAAGCCCAGTGACCAGTGTCAGGCTCTCTTCGGTGGTGCCTGCTTCTGTGGT 239
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AATGGAGAGAAGCCCAGTGACCAGTGCCAGGCTCTCTTCGGTGGTGCCTGCTTCTGTGGT 239
Query 240 AGGTGAGAACAAGCCACGACAGCTCACACCCATGGACTTAGCCATGAAGCTCCACTACGT 299
||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGCGAGAACAAGCCACGACTGTTCACACCCATGGACTTAGCCATGAAGCTCCACTACGT 299
Query 300 CCGAGCCGTCTACTTCTTCAAGGGTGCACGTGACTTCACTGTCGCCGACGTGAAGAACAC 359
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 300 CCGAGCTGTCTACTTCTTCAAGGGTATACGTGACTTCACTGTCGCCGAATTGAAGAACAC 359
Query 360 CATGTTTACTCTACAGTCTCTACTCCAATCTTATCACCACGTCTCAGGTCGGATCCGGAT 419
|||| | | | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CATG--T--T-T--A--CTCTACTCCAGTCTTATCACCACGTCTCAGGTCGGATCCGGAT 410
Query 420 GTCCGACAACGACAACGACACTTCAGCTGCAGCCATACCTTACATTCGCTGCAACGACAG 479
||||||||||| | | |||||||| | |||||||||||||||||||||||||||||
Sbjct 411 GTCCGACAACG---A--TC-CTTCAGCTCCTGCCATACCTTACATTCGCTGCAACGACAG 464
Query 480 TGGCATACGCGTGGTCGAGGCCAACGTCGAAGAGTTCACAGTGGAGAAGTGGCTCGAGTT 539
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 465 TGGCATGCGCATCGTCGAGGCCAACGTCGAAGAGTTCACAGTGGAGAAGTGGCTCGACTT 524
Query 540 GGACGACCGTTCCATTGACCACCGATTCCTTGTCTACGATCACGTTCTTGGTCCTGATCT 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 525 GGACGACCGTTCCATTGACCACCGGTTCCTTGTCTACGATCACGTTCTTGGTCCTGATCT 584
Query 600 TACCTTCTCGCCACTCGTTTTCCTCCAGATAACTCAGTTTAAATGTGGTGGGCTCTGTAT 659
||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||| |||
Sbjct 585 TACCTTCTCTCCACTTGTTTTCGTCCAGATAACTCAGTTTAAATGTGGTGGTCTCTCTAT 644
Query 660 TGGGTTGAGTTGGGCCCATATTCTTGGAGACGTGTTTTCAGCATCAACGTTCATGAAAAC 719
||||||||||||||||||| |||| ||||| | ||||||||| |||| |||||||||||
Sbjct 645 TGGGTTGAGTTGGGCCCATGTTCTAGGAGATTTATTTTCAGCAGCAACTTTCATGAAAAC 704
Query 720 ACTTGGACAGCTGGTATCGGGTCATGCCCCAACAAAACCGGTTTACCCGAAAACCCCCGA 779
||||||||||||| | || ||||||| ||||||||||| |||||||||| ||||||| ||
Sbjct 705 ACTTGGACAGCTGATGTCAGGTCATGGCCCAACAAAACTGGTTTACCCGGAAACCCCTGA 764
Query 780 ACTAACCTCTCATGCTCGTAATGATGGTGAAGCTATTTCCATTGAAAAGATAGATTCGGT 839
||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 765 ACTGACCTCTCATGCTC---ATAATGGTGAAGCTATTTCCATTGAAAAGATAGAATCGGT 821
Query 840 TGG-CGAGTATTGGTTACTTACCAATAAATGCAAGATGGGGAGACACATTTTTAATTTTA 898
||| | |||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 822 TGGTC-AGTATTGGTTACTTACAAATAAATGCAAGATGGGAAGATACATTTTTAATTTTA 880
Query 899 GCCTCAACCACATTGATAGCTTGATGGCCAAGTACACCACGCGAGACCAACCTTTCTCGG 958
|||||||||| |||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 881 GCCTCAACCAAATTGATCGTTTGATGGCCAAGTACACCACACGAGACCAACCTTTCTCGG 940
Query 959 AGGTTGATATTTTGTATGCATTGATATGGAAGTCGCTACTGAATATCCGCGGCGAAACAA 1018
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 941 AGGTTGATATTTTGTATGCATTGATATGGAAGGCCCTACTGAATATCCGCGGCAAAACAA 1000
Query 1019 ACACGAATGTTATAACAATTTGTGACCGTAAAAAGTCTTCAACCTGTTGGAACGAGGACT 1078
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1001 ACACAAATGTTATAACAATTTGTGACCGTAAAAAATCTTCAACCTGTTGGAATGACGACT 1060
Query 1079 TGGTAATAAGCGTAGTGGAAAAGAATGACGAAATGGTTGGGATATCCGAACTAGCTGCAC 1138
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1061 TGGTAATAAGCATAGTGGAAAAGAATGACGAAATGATTGGGATATCCGAACTAGCTGCCC 1120
Query 1139 TGATTGCTGGTGAAAAAAGAGAAGAAAACGGTGCGATCAAGAGGATGATAGAACAAGATA 1198
|||| || ||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 1121 TGATCGCGGGTGAAAAAAGAGAAGAAAACGGTGTGATCAAGAGGATAATAGAAGAAGATA 1180
Query 1199 AAGGCTCTTCGGATTTTTTCACGTACGGTGCAAATTTAACGTTTGTGAATCTTG--ATGA 1256
|||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1181 AAGGGTCTTCAGATTTTATCACGTACGGTGCAAATTTAACGTTTGTGAATCTTGACATG- 1239
Query 1257 AATAGATATGTATGAACTTGAGATCAACGGAGGGAAGCCGGATTTCGTAAACTACACGAT 1316
||||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1240 -ATAGATATGTATGAAATTGAGATCAAAGGGGGGAAGCCAGATTTCGTAAACTACACGAT 1298
Query 1317 TCATGGGGTCGGAGACAAAGGTGTTGTTTTGGTTTTTCCCAAGCAAAACTTTGCAAGGAT 1376
||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1299 TCATGGGGTTGGGGACAAAGGTGTTGTTTTGGTTTATCCCAAGCAAAACTTTGCAAGGAT 1358
Query 1377 TGTAAGTGTAGTGATGCCTGAAGAAGACCTTGCAAAACTCAAGGAGGAGGTGACTAATAT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TGTAAGTGTAGTGATGCCTGAAGAAGACCTTGCAAAACTCAAGGAGGAGGTGACTAATAT 1418
Query 1437 GATTATATAACTTTGT---ATCTTCTTCTTGT 1465
|||||| ||||||||| ||||| |||||||
Sbjct 1419 GATTATGTAACTTTGTTGTATCTTGTTCTTGT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5