BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24530.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889705 jgi|Araly1|889705|Al_scaffold_0007_1691 2571 0.0
> Ahg889705 jgi|Araly1|889705|Al_scaffold_0007_1691
Length=1560
Score = 2571 bits (1392), Expect = 0.0
Identities = 1506/1562 (96%), Gaps = 4/1562 (0%)
Strand=Plus/Plus
Query 301 ATGCTCCAAATGAAGCAGCCATTACAGAACCTTAATCAGTCGCAGAAGACAGCTTTAGCT 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1 ATGCTCCAAATGAAGCAGCCATTACAGAACCTTAATCAGTCGCAGAGGACAGCCTTAGCT 60
Query 361 GGTGTTTTCGTGCTCCTTTTCCCGATTCTCTATCCGAATCTCTTCAGCCCTCTTGGTCGC 420
||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 61 GGTGTTTTCGTCCTCCTTCTCCCGATTCTCTCTCCGAATCTCTTCCGCCCTCTTGGTCGC 120
Query 421 GCCTCTCCTTCTCTCTTCTCCGAATGGAATGCTCCAAGGCCTAGACATTTGAGCCTACTC 480
||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 121 GCCTCTCCTTCCCTCTTCTCCGAATGGAATGCCCCAAGGCCTAGACATTTGCGCCTACTC 180
Query 481 CAAGGCGCTCTTGATCGACAAATTTCGATCAGACAACAAGTTGAGTTATGGTCTCCCTTG 540
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 181 CAAGGCGCTCTTGATCGACAAATTTCGATCAGACAACAGGTTGAGTTGTGGTCTCCCTTG 240
Query 541 GCAGATCAAGGTTGGAAGCCTTGCACTGAATCTTATAGAGGCGCTT-CCTTGCCAGAGAA 599
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 241 GCAGATCAAGGTTGGAAGCCTTGCACTGAATCTTATAGAGGCG-TTCCCTTGCCAGAGAA 299
Query 600 GTCTGAAGGGTTTCTTCAGGTTTTCCTTGACGGCGGACTAAATCAACAAAGAATGGGAAT 659
|||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTCTCATGGGTTTCTTCAGGTGTTCCTTGACGGCGGACTAAATCAACAAAGAATGGGAAT 359
Query 660 ATGTGATGCTGTTGCTGTTGCCAAGATAATGAACGTTACACTCGTGATTCCACGCCTTGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGTGATGCTGTTGCTGTTGCCAAGATAATGAACGTTACACTCGTGATTCCACGCCTTGA 419
Query 720 AGTAAATACTGTTTGGCAAGATTCAAGTTCTTTCACAGATATATTTGATTTGGATCACTT 779
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 AGTAAATCCTGTTTGGCAAGATTCAAGTTCCTTCACAGATATATTTGATTTGGATCACTT 479
Query 780 TATAAGTGTCCTTAAAGACGAGGTGCGGATTGTTAGGGAGCTTCCAATACAGTATGCCTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATAAGTGTCCTTAAAGACGAGGTGCGGATTGTTAGGGAGCTTCCAATACAGTATGCCTG 539
Query 840 GAGCACTCGTGATTATTACGCTACAGGTATTCGAGCTACTAGGATTAAGACTGCGCCTGT 899
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 540 GAGCACTCGTGATTATTACGCCACAGGTATCCGAGCTACTAGGATTAAGACTGCGCCTGT 599
Query 900 TCACGCTTCAGCAGAGTGGTATTTGGAAAATGTCTTACCTATTATCCAGAGTTATGGCAT 959
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 TCACGCTTCAGCAGAGTGGTATTTGGAAAATGTCTTACCTGTTATCCAGAGTTATGGCAT 659
Query 960 TGCTGCTGTTGCTCCATTCTCTCACCGTTTGGCATTTGACAATTTGCCTGAAAGTATACA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 TGCTGCTGTTGCTCCATTCTCTCACCGTTTGGCATTTGACAATTTGCCTGAAAGCATACA 719
Query 1020 GCGGTTACGCTGTAAAGTAAATTTTGAAGCATTAAACTTTGTTCCTCATATTCGTGAGCT 1079
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 720 GCGGTTACGCTGTAAAGTGAATTTTGAAGCATTAAACTTTGTTCCTCACATTCGGGAGCT 779
Query 1080 AGGGGACGCTCTTGTGCATCGACTCAGAAATCCTCCTTCCAGCTCTCAAACATCAGGAAC 1139
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 AGGGGACGCTCTTGTGCATCGACTCAGATATCCTCCTTCCAGCTCTCAAACATCAGGAAC 839
Query 1140 TATGGATCCGACAGACAGAATAAACACCATTGTAAAAGCTGGTGCTGGAAAGTTTGCAGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TATGGATCCGACAGACAGAATAAACACCATTGTAAAAGCTGGTGCTGGAAAGTTTGCAGT 899
Query 1200 GCTTCATCTTCGTTTCGATAAAGACATGGCTGCTCATTCAGGCTGTGACTTTGAAGGTGG 1259
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 GCTTCATCTTCGTTTCGATAAAGATATGGCTGCTCATTCAGGCTGTGACTTTGAAGGTGG 959
Query 1260 CAAAGCAGAAAAACTGGCGCTGGCAAAATATCGCCAGGTGATCTGGCAAGGAAGGGTCTT 1319
||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 960 CAAAGTAGAAAAACTGGCGCTGGCAAAATACCGCCAGGTGATCTGGCAGGGACGGGTCTT 1019
Query 1320 AAATTCACAGTTCACAGATGAGGAGCTAAGAAACAAAGGTCGCTGCCCGTTGACACCAGA 1379
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 AAATTCCCAGTTCACAGATGAGGAGCTAAGAAACAAAGGGCGCTGCCCGTTGACACCAGA 1079
Query 1380 AGAGATTGGTTTACTGCTGTCAGCTTTGGGTTTCAGTAACAATACCCGTCTCTATCTAGC 1439
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGAGATTGGTTTACTGCTTTCAGCTTTGGGTTTCAGTAACAATACCCGTCTCTATCTAGC 1139
Query 1440 GTCACACCAGGTTTACGGAGGAGAAGCAAGAATCTCAACGCTGCGTAAACTGTTCCCCGG 1499
||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 1140 TTCACACCAGGTTTACGGAGGAGAGGCAAGAATCTCGACCCTGCGTAAACTGTTCCCTGG 1199
Query 1500 GATTGAAAACAAGAAAAGCCTAGCCTCTGCTGAGGAACTAGCTGATGTACAAGGGAAAGC 1559
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 GATTGAAAACAAGAAAAGCCTAGCCTCTGCGGAGGAACTAGCTGATGTACAAGGGAAAGC 1259
Query 1560 TTCTCTGATGGCTGCAGTCGATTACTACGTGAGTATGAAGAGCGACATCTTCATCTCTGC 1619
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1260 ATCTCTAATGGCTGCAGTCGATTATTACGTGAGTATGAAGAGCGACATCTTCATCTCAGC 1319
Query 1620 ATCTCCCGGGAACATGCACAACGCATTACAGGCGCATAGAGCCTACTTGAATCTCAAAAC 1679
||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||
Sbjct 1320 ATCTCCCGGGAACATGCACAACGCATTGCTGGCACATAGAGCCTACTTGAATCTTAAAAC 1379
Query 1680 CATAAGACCCAACATGATACTGTTAGGACAAGTCTTT-GTGAACAAGAGCTTAGATTGGT 1738
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||
Sbjct 1380 CATAAGACCCAACATGATACTGTTAGGACAGGT-TTTCGTGAACAAGAGCTTAGAGTGGT 1438
Query 1739 CAGAGTTTGAAGGAGCAGTAATGAATGGGCACAAAAACAGGCAAGGCCAGCTTCGTCTAC 1798
||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 CAGAGTTTGAAGGCGCAGTAGTGAATGGGCACAAGAACAGGCAAGGCCAGCTTCGTCTAC 1498
Query 1799 GCAAACAGAAACAGTCTATTTACACTTATCCAGCTCCTGATTGCATGTGTAAAGTAGCTT 1858
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1499 GCAAACAGAAACAGTCTATTTACACTTATCCAGCTCCTGATTGCATGTGTAAAGCAGCTT 1558
Query 1859 AG 1860
||
Sbjct 1559 AG 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5