BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24540.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492389 jgi|Araly1|492389|fgenesh2_kg.7__1822__AT4G24540.1 1585 0.0
> Ahg492389 jgi|Araly1|492389|fgenesh2_kg.7__1822__AT4G24540.1
Length=1038
Score = 1585 bits (858), Expect = 0.0
Identities = 986/1045 (94%), Gaps = 20/1045 (2%)
Strand=Plus/Plus
Query 21 tctctctctttctctctcACTCACACATTAGGGAGT-AAACAGCTACCAGAAAAACC-TT 78
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||
Sbjct 1 TCTCTCTCTTTCTCTCTCACTCACACATTAGGGAATCAAA-AGCTACCAGAAAAACCTTT 59
Query 79 TTTTATCTTCTCACAAATTTAATAAAGTGGGTGCTGAGATTG-AATAACGTAATCCAAGA 137
|||||||||||||| ||||||||||||| ||||||||||||| || ||| ||||||||||
Sbjct 60 TTTTATCTTCTCACGAATTTAATAAAGTAGGTGCTGAGATTGCAA-AACCTAATCCAAGA 118
Query 138 TCCTCCAACTCACA-GAAAGGC-AGATTCAAGAACAGTAGTGAAGGAGAGATCTGGTAAA 195
| | ||| | | | |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 119 T-ATTCAA-AGAAAGGGTAGGCAAGATTCAAGAACAGTAGTGAA--AGAGATCTGGTAAA 174
Query 196 ATGGCGAGAGAGAAGATAAGGATAAAGAAGATTGATAACATAACAGCGAGACAAGTTACT 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATGGCGAGAGAGAAGATAAGGATAAAGAAGATTGATAACATAACAGCGAGACAAGTTACT 234
Query 256 TTCTCAAAGAGAAGAAGAGGAATCTTCAAGAAAGCCGATGAACTTTCAGTTCTTTGCGAT 315
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 235 TTCTCTAAGAGAAGAAGAGGAATCTTTAAGAAAGCCGATGAACTTTCAGTTCTTTGCGAT 294
Query 316 GCTGATGTTGCTCTCATCATCTTCTCTGCCACCGGAAAGCTCTTCGAGTTCTCCAGCTCA 375
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 295 GCTGATGTTGCTCTCATCATCTTCTCTGCCACTGGAAAGCTCTTCGAATTCTCTAGCTCA 354
Query 376 AGAATGAGAGACATATTGGGAAGGTATAGTCTTCATGCAAGTAACATCAACAAATTGATG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGAATGAGAGACATATTGGGAAGGTATAGTCTTCATGCAAGTAACATCAACAAATTGATG 414
Query 436 GATCCACCTTCTACTCATCTCCGGCTTGAGAATTGTAACCTCTCCAGACTAAGTAAGGAA 495
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 GATCCACCTTCTACTCATCTCCAGCTTGAGAATTGTAACCTCTCCAGACTAAGTAAGGAA 474
Query 496 GTCGAAGACAAAACCAAGCAGCTACGGAAACTGAGAGGAGAGGATCTTGATGGATTGAAC 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTCGAAGACAAAACCAAGCAGCTACGGAAACTGAGAGGAGAGGATCTTGATGGATTGAAC 534
Query 556 TTAGAAGAGTTGCAGCGGCTGGAGAAACTACTTGAATCCGGACTTAGCCGTGTGTCTGAA 615
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 535 TTAGAAGAATTGCAGCGGCTAGAGAAACTGCTTGAATCCGGACTTAGCCGTGTCTCTGAA 594
Query 616 AAGAAGGGCGAGTGTGTGATGAGCCAAATTTTCT-CACTTGAGAAACGGGGATCGGAATT 674
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 595 AAGAAGGGCGAGTGTGTGATGAGCCAGATTT-CTTCACTTGAGAAACGGGGATCGGAATT 653
Query 675 GGTGGATGAGAATAAGAGACTGAGGGATAAACTAGAGACGTTGGAAAGGGCAAAACTGAC 734
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 654 GGTGGATGAAAATAAGAGACTGAGGGATAAACTAGAAACGTTGGAAAGGGCTAAACTGAC 713
Query 735 GACGCTTAAAGAGGCTTTGGAGACAGAGTCGGTGACCACAAATGTGTCAAGCTACGACAG 794
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GACGTTTAAGGAGGTTTTGGAGACAGAGTCGGTGACCACAAATGTGTCAAGCTACGACAG 773
Query 795 TGGAACTCCCCTTGAGGATGACTCCGACACTTCCCTGAAGCTTGGGCTTCCATCTTGGGA 854
|||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 774 TGGAGCTCCCCTTGAGGATAACTCCGACACTTTCCTGAAGCTTGGGCTTCCATCTTGGGA 833
Query 855 ATGAATCTGAGAGAGAGAAAGATCCAGCAGAGTTGACTTCGATGGAAGCCCACAAA-TAT 913
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 834 ATGAACCTGAGAGAGAGAAAGATCCAGCAGAGTTGACTTCGATGGAAGCCCACAAAATAT 893
Query 914 TAAGTCTA--C--C-TTTTCCCTTTCTTTTCTTTGAA-TAAGTGTTGAAAAAGAATTGAG 967
|||||||| | | |||||||||||||| ||||||| ||||| |||||||| |||||||
Sbjct 894 TAAGTCTAGTCTACCTTTTCCCTTTCTTTCCTTTGAAATAAGTATTGAAAAAAAATTGAG 953
Query 968 ATGGGAAGGATGAATTCTCATTGCATTGCAGAGAAGCAAGTTTCAGATATTGTACGTGTT 1027
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 ATGGGAAGAATGAATTCTCATTGCATTGCAGAGAAGCAAGTTTCAGACATTGTACGTGTT 1013
Query 1028 ATTGGTCTTTATAACTATTTTGCAC 1052
|||||| ||||||||| ||||||||
Sbjct 1014 ATTGGTTTTTATAACTGTTTTGCAC 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5