BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24550.2
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945645 jgi|Araly1|945645|scaffold_701874.1 2348 0.0
> Ahg945645 jgi|Araly1|945645|scaffold_701874.1
Length=1399
Score = 2348 bits (1271), Expect = 0.0
Identities = 1356/1398 (97%), Gaps = 2/1398 (0%)
Strand=Plus/Plus
Query 115 TCGGAATCCACCGCTATAAGGAACGATGATGATCTCCCAATTCTTCGTCTTATCTCAGCG 174
||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1 TCGGATTCCACCGC--TAAGGAACGATGATGATCTCTCAGTTCTTCGTCTTATCTCAGCG 58
Query 175 AGGAGATAACATCGTCTTCCGTGACTACCGGGCTGAGGTACCCAAAGGAAGTACAGAGAC 234
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 59 AGGAGATAACATCGTCTTCCGTGACTACCGGGCTGAGGTACCGAAAGGCAGTACAGAGAC 118
Query 235 ATTCTTCCGTAAAGTCAAGTTCTGGAAGGAGGATGGCAATGCAGAGGCGCCACCTATCTT 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTTCTTCCGTAAAGTCAAGTTCTGGAAGGAGGATGGCAATGCAGAGGCGCCACCTATCTT 178
Query 295 TAATGTCGATGGCGTGAACTACTTCCATGTCAAGGTTGTTGGTCTATATTTTGTTGCGAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TAATGTCGATGGCGTGAACTACTTCCATGTCAAGGTTGTTGGTCTATATTTTGTTGCGAC 238
Query 355 AACGAGAGTTAACGTGTCACCCTCTCTTGTTTTGGAGCTTCTACAAAGGATTGCTCGTGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACGAGAGTTAACGTGTCACCCTCTCTTGTTTTGGAGCTTCTACAAAGGATTGCTCGTGT 298
Query 415 TATTAAGGATTATCTTGGTGTTCTGAATGAAGATTCATTCAGGAAAAACTTTGTGCTCGT 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 TATTAAGGATTATCTTGGTGTTTTGAATGAAGATTCATTCAGGAAAAACTTTGTGCTCGT 358
Query 475 GTATGAGTTGCTTGATGAAGTTATTGATTTTGGTTACGTGCAAACTACATCTACCGAAGT 534
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 359 GTATGAGTTGCTTGACGAAGTTATTGATTTTGGTTACGTGCAAACCACATCTACCGAGGT 418
Query 535 TTTGAAATCTTATATATTCAATGAGCCGATTGTGGTTTCTCCTGCCCGCCTTCAGCCTAT 594
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 419 TTTGAAATCCTATATATTCAATGAGCCAATTGTGGTTGCTCCTGCCCGCCTTCAGCCTAT 478
Query 595 TGATCCTGCTGCCATTTTCACACAAGGAGCCAAAAGAATGCCTGGAACTGCAGTTACAAA 654
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 CGATCCTGCTGCCATTTTCACACAAGGAAACAAAAGAATGCCTGGAACTGCAGTTACAAA 538
Query 655 ATCGGTTGTGGCTAATGATCCTGGGGGTCGGAGAAGAGAGGAAATTTTTGTGGACATCAT 714
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 ATCGGTTGTAGCTAATGATCCTGGGGGTCGGAGAAGAGAGGAAATTTTTGTGGACATTAT 598
Query 715 CGAGAAAATCAGTGTTACTTTTAGTTCAAGCGGATATATACTGACTTCTGAGATTGATGG 774
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 CGAGAAAATCAGTGTTACTTTTAGTTCAAGCGGCTATATACTGACTTCTGAGATTGATGG 658
Query 775 CACCATTCAAATGAAGAGCTATCTTTCTGGTAATCCAGAAATCCGTTTAGCTCTTAATGA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AACCATTCAAATGAAGAGCTATCTTTCTGGTAATCCAGAAATCCGTTTAGCTCTTAATGA 718
Query 835 AGACCTAAACATAGGAAGAGGAGGGAGATCAGTATATGATTATAGGAGTTCTTCAGGTTC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGACCTAAACATAGGAAGAGGAGGGAGATCAGTATATGATTATAGGAGTTCTTCAGGTTC 778
Query 895 AGGGGTGATACTTGATGATTGTAACTTTCATGAGTCTGTTCGTCTGGATAGCTTCGATTC 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 779 AGGGGTGATACTTGATGATTGTAACTTTCATGAGTCTGTTCGTCTGGATAGCTTTGATTC 838
Query 955 AGATAGAACTTTGTCCCTGGTTCCACCAGATGGTGAATTTCCAGTAATGAATTACCGTAT 1014
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 AGATAGAACTTTGTCCCTGGTTCCACCGGATGGTGAATTTCCAGTAATGAATTACCGTAT 898
Query 1015 GACTCAGGAGTTCAAGCCTCCTTTTCATGTTAATACCTTGATTGAAGAGGCTGGACGTCT 1074
||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 899 GACCCAGGAGTTCAAGCCTCCTTTTCATGTTAATACCTTGATTGAAGAGGCCGGGCGCCT 958
Query 1075 TAAGGCTGAAGTGATTATTAAAATACGCGCTGAGTTCCCTTCAGACATAATTGCAAACAC 1134
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 959 TAAGGCTGAAGTGATTATTAAAATACGAGCTGAGTTCCCTTCTGACATAATCGCAAACAC 1018
Query 1135 AATCACTGTTCAGATGCCATTGCCAAATTATACTTCCAGGGCTAGTTTTGAGTTAGAACC 1194
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AATTACTGTTCAGATGCCATTGCCAAATTATACTTCCAGGGCTAGTTTTGAGTTAGAACC 1078
Query 1195 CGGTGCTGCTGGACAGAGGACAGATTTCAAGGAATCCAACAAAATGCTTGAATGGAATTT 1254
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 CGGTGCGGCTGGACAGAGGACAGATTTCAAGGAATCCAGCAAAATGCTTGAATGGAATTT 1138
Query 1255 AAAAAAGATTGTTGGCGGGGGTGAGCATACACTGCGTGCAAAGCTTACATTTTCACAGGA 1314
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1139 AAAGAAGATTGTTGGCGGGGGTGAGCATACACTGCGTGCAAAGCTGACATTTTCACAGGA 1198
Query 1315 ATTTCATGGTAATATCACAAAGGAAGCAGGGCCAGTCAGCATGACGTTCACGATACCTAT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATTTCATGGTAATATCACAAAGGAAGCAGGGCCAGTCAGCATGACGTTCACGATACCTAT 1258
Query 1375 GTACAATGTTTCTAAACTTCAGGTCAAATACTTGCAGATAGCAAAGAAATCAAGTAGTTA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTACAATGTTTCTAAACTTCAGGTCAAATACTTGCAGATAGCAAAGAAATCAAGTAGTTA 1318
Query 1435 TAATCCATATCGTTGGGTGAGATATGTGACACAGGCGAATTCTTATGTGGCTAGGATATG 1494
|||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||
Sbjct 1319 TAATCCATATCGTTGGGTAAGATACGTTACACAGGCCAATTCATATGTGGCTAGGATATG 1378
Query 1495 ACCTGTTTTCAGATAATG 1512
||||| ||||||||||||
Sbjct 1379 ACCTGCTTTCAGATAATG 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5