BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24570.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945643 jgi|Araly1|945643|scaffold_701872.1 1533 0.0
Ahg481111 jgi|Araly1|481111|fgenesh2_kg.4__171__AT2G22500.1 219 5e-56
> Ahg945643 jgi|Araly1|945643|scaffold_701872.1
Length=993
Score = 1533 bits (830), Expect = 0.0
Identities = 944/998 (95%), Gaps = 11/998 (1%)
Strand=Plus/Plus
Query 59 ttctctcttctctctccaatttcacaacaaTGGGAGTCAAAAGTTTCGTTGAAGGTGGGA 118
||| |||||| || |||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 1 TTCCCTCTTC-CT-TCCAATTTCACAACCATGGGCGTCAAAAGTTTTGTAGAAGGTGGGA 58
Query 119 TTGCCTCTGTAATCGCCGGTTGCTCTACTCACCCTCTCGATCTAATCAAGGTTCGTCTTC 178
|||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 59 TTGCTTCCGTAATCGCCGGTTGCTCCACTCACCCTCTCGATCTCATCAAGGTTCGTCTTC 118
Query 179 AGCTTCACGGTGAAGCACCTTCCACCACCACCGTCACTCTCCTCCGTCCAGCTCTCGCTT 238
|||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGCTTCACGGCGAAACTCCTTCCACCACCACCGTCACTCTCCTCCGTCCAGCTCTCGCTT 178
Query 239 TCCCCAATTCTTCTCCTGCAGC-TTTCCTG--GAAACGACTTCTTCAGTCCCCAAAGTAG 295
|||||||||||||||||||||| |||| || || || |||||||| || |||||||| |
Sbjct 179 TCCCCAATTCTTCTCCTGCAGCTTTTCTTGCCGAGACAACTTCTTCCGTTCCCAAAGTTG 238
Query 296 GACCGATCTCACTCGGAATCAACATAGTCAAATCGGAAGGCGCCGCCGCGTTATTCTCAG 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 GACCGATCTCACTCGGAATCAACATAGTCAAATCGGAAGGCGCCGCCGCGTTATTCTCCG 298
Query 356 GAGTCTCCGCTACACTTCTCCGTCAGACGTTATATTCCACCACCAGGATGGGTCTATACG 415
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 GCGTCTCCGCTACACTTCTCCGACAGACGTTATATTCCACCACCAGGATGGGTCTATACG 358
Query 416 AAGTGCTTAAGAACAAATGGACTGATCCTGAGTCAGGGAAGTTGAATCTGAGTAGGAAGA 475
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 359 AAGTGCTTAAGAACAAATGGACTGATCCTGAGTCAGGGAAGCTGAATCTGCCTAGGAAGA 418
Query 476 TCGGTGCAGGGCTAGTCGCTGGTGGAATCGGAGCCGCCGTTGGAAATCCAGCTGACGTGG 535
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 419 TCGGTGCAGGGCTAGTCGCTGGAGGTATCGGAGCCGCCGTTGGAAATCCAGCTGACGTGG 478
Query 536 CGATGGTTAGGATGCAAGCTGACGGGAGG-TTACCTTTAGCGCAACGTCGTAACTACGCC 594
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 479 CGATGGTTAGGATGCAAGCTGACGGGAGGCTT-CCTTTAGCGCAGCGTCGTAACTACGCC 537
Query 595 GGAGTAGGAGACGCAATCAGGAGCATGGTTAAGGGAGAAGGCGTAACGAGCTTGTGGCGA 654
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 538 GGAGTAGGAGACGCAATCAAGAGCATGGTTAAGGGAGAAGGCGTAACGAGCTTATGGCGT 597
Query 655 GGCTCGGCGTTGACGATTAACCGAGCGATGATTGTGACGGCGGCTCAGCTAGCGTCTTAC 714
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 598 GGCTCGGCGTTGACGATTAACCGAGCCATGATTGTGACGGCGGCTCAGCTAGCGTCGTAC 657
Query 715 GATCAGTTCAAGGAAGGGATATTGGAGAATGGTGTGATGAATGATGGGCTAGGGACTCAC 774
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 658 GATCAGTTCAAGGAAGGGATATTGGAGAATGGTGTGATGAAGGATGGGTTAGGGACTCAC 717
Query 775 GTGGTAGCGAGTTTTGCGGCGGGGTTTGTTGCTTCGGTTGCGTCTAATCCGGTGGATGTG 834
||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 GTGGTGGCGAGTTTCGCCGCGGGGTTTGTTGCTTCGGTGGCGTCTAATCCGGTGGATGTG 777
Query 835 ATAAAGACGAGAGTGATGAATATGAAGGTGGGAGCGTACGACGGCGCGTGGGATTGTGCG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATAAAGACGAGAGTGATGAATATGAAGGTGGGAGCGTACGACGGCGCGTGGGATTGTGCG 837
Query 895 GTGAAGACGGTTAA-AGCGGAAGGAGCCATGGCTCTT-TATAAAGGCTTTGTTCCTACAG 952
||||||||||| || ||| |||||||| |||||| || ||||||||||||||||||||||
Sbjct 838 GTGAAGACGGT-AAGAGCAGAAGGAGCAATGGCT-TTATATAAAGGCTTTGTTCCTACAG 895
Query 953 TTTGTAGGCAAGGTCCTTTCACTGTTGTTCTCTTCGTTACGTTGGAGCAAGTTAGGAAGC 1012
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 896 TTTGTAGGCAGGGTCCTTTCACTGTTGTTCTCTTCGTTACGTTGGAGCAAGTCAGGAAGC 955
Query 1013 TGCTTCGAGATTTTTGATACCATTCTTTTATTGATGAT 1050
|||||||||||||||||||| |||||||||||||||||
Sbjct 956 TGCTTCGAGATTTTTGATACAATTCTTTTATTGATGAT 993
> Ahg481111 jgi|Araly1|481111|fgenesh2_kg.4__171__AT2G22500.1
Length=1413
Score = 219 bits (118), Expect = 5e-56
Identities = 310/401 (77%), Gaps = 20/401 (5%)
Strand=Plus/Plus
Query 475 ATCGGTGCAGG-GCTAGTCGCTGGTGGAATCGGAGCCGCCGTTGGAAATCCAGCTGACGT 533
|||||||| || || | |||| || | |||||||||||||||||| ||||| ||||||||
Sbjct 580 ATCGGTGCCGGAGCCA-TCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGT 638
Query 534 GGCGATGGTTAGGATGCAAGCTGACGGGAGGTTACCTTTAGC-GCA-ACGTCGTAACTAC 591
||||||||||||||||||||| || || | ||||| || || | | | | | |||||
Sbjct 639 GGCGATGGTTAGGATGCAAGCCGATGGTCGTTTACCGTTGGCTG-AGA-GAAGAAACTAT 696
Query 592 GCCGGAGTAGGAGACGCAATCA-GGAGCATGGTTAAG-GGAGAAGGCGTAACGAGC-TTG 648
| || |||||| |||| | | ||| || | || |||||||| ||| | |||
Sbjct 697 AAAAGCGTTTTAGACGCGATCACGCA-AATGATT-CGCGGTGAAGGCGTTACG-TCTTTG 753
Query 649 TGGCGAGGCTCGGCGTTGACGATTAACCGAGCGATGATTGTGACGGCGGCTCAGCTAGCG 708
||| |||| ||| | |||||||| ||| |||| ||| |||||||| | | ||| ||||
Sbjct 754 TGGAGAGGATCGTCTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTAGCT 813
Query 709 TCTTACGA-TCAGTTCAAGGAAG-GGATATTGGAG-AATGGTGTGAT-GAATGATGGGCT 764
|| || || || ||| || | || ||| |||||| || ||| || | ||| ||||||||
Sbjct 814 TCGTATGATTCTGTT-AAAG-AGACGATTTTGGAGAAAGGGT-TGTTGGAA-GATGGGCT 869
Query 765 AGGGACTCACGTGGTAGCGAGTTTTGCGGCGGGGTTTGTTGCTTCGGTTGCGTCTAATCC 824
|||||||| || | |||||||| || || |||||||| || || ||||| || |||||
Sbjct 870 TGGGACTCATGTTTTGGCGAGTTTCGCTGCTGGGTTTGTAGCGTCCGTTGCTTCGAATCC 929
Query 825 GGTGGATGTGATAAAGACGAGAGTGATGAATATGAAGGTGG 865
||| |||||||| ||||||||||||||||||||||||||||
Sbjct 930 GGTTGATGTGATTAAGACGAGAGTGATGAATATGAAGGTGG 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5