BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24590.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492383 jgi|Araly1|492383|fgenesh2_kg.7__1816__AT4G24590.1 1495 0.0
> Ahg492383 jgi|Araly1|492383|fgenesh2_kg.7__1816__AT4G24590.1
Length=1012
Score = 1495 bits (809), Expect = 0.0
Identities = 959/1028 (93%), Gaps = 23/1028 (2%)
Strand=Plus/Plus
Query 1 CTTTTTCCGGTGGAAATAAAACAAACAAATA--TTG-TAGGTCG-CAATTGTGGAGGAGA 56
||||||||||||||||||||||||||||||| | | || | | ||||||||||||||
Sbjct 1 CTTTTTCCGGTGGAAATAAAACAAACAAATAGGTCGCAAGTTGGAAAATTGTGGAGGAGA 60
Query 57 ACCATCAAATTCATCTTCTTCTCTTTCACAAATTTCAGCCTAAAACTTTCCGATTCCATG 116
|| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 61 ACAATC-AATTCATCTTCTTCTCTTTCACAAATTTC-G-GTAAAACTTTCCGATTCCATG 117
Query 117 GAAATCGAAGTCTCTTGCTCGACTCATGATGCCGAAACCAAAGGAAACCGCATCGATTTG 176
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 118 GAAATCGAAGTCTCTTGCTCGACTCATGATGCCGACAGCAAAGGAAACCGCATCGATTTG 177
Query 177 GATAGTATTCGTGTAAAGCGAAAGACGTTACAGAATCTGCTCGCGGATTGCCAGAGAGCT 236
|||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 178 GATAGTATCCGTGTCAAGCGGAAGACGTTGCAGAATCTGCTCGAGGATTGCCAGAGAGCT 237
Query 237 CTTGAGCTTCTAGAACTTCCCGGCGATGAAAACGGTGGCGAACAGAGTGAATCACCggag 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTGAGCTGCTAGAACTTCCCGGCGATGAAAACGGTGGCGAACAGAGTGAATCACCGGAG 297
Query 297 gaggaggaggaggaAGAATCGGACAGGGAAGAACCGTCTGCTTCCGATCCAGGAGATCCT 356
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 298 GAGGAGGAGGAGGAGGAATCGGACAGGGAAGAGTCGTCTTCTTCCGATCCAGGAGATCCT 357
Query 357 GAAGCTGATAAATTTTATGATCTCATCAAATCTAGAGTTGAATGTAATGACTTTCGTGAA 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 GAAGCTGATAAATTTTATGATCTCATCAAATCTAGAGTTGAATGTCATGACTTTCGTGAA 417
Query 417 AAGATAGAATTAGCTCAAGTTTCAGTTCCCCAAGTTCTTGCTGAAGATAGTAGCTCTTGG 476
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 418 AAGATAGAATTAGCTCAAGTTTCAGTTCCCCAAGATCTTGCTGAAGATAGTAGCTCTTGG 477
Query 477 GATGTAGTTAGTGAAGATGATTTATGGGATGAGGAATGTGTGGGTCAAACGGAAGATGAT 536
|||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||
Sbjct 478 GATGTAGTTAGTGAAGATGATTTATGGGGTGAGGAAGGTATGGGTCAAATGGAAGATGAT 537
Query 537 TATGTCGTTGTTAGGGAAGAAGATATAGCTGACGGTATTGCTTGTTTCATGGCTACTTAT 596
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 538 TATGTTGTTGTTAGGGAAGAAGATATAGCAGACGGTATTGCTTGTTTCATGGCTACATAT 597
Query 597 TTATCATCCCTTAAGCAAACAAAGGATATATCACCTGATCAGCTTCAGAAAGCACTTAGC 656
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTATCATCCCTTAAGCAGACAAAGGATATATCACCTGATCAGCTTCAGAAAGCACTTAGC 657
Query 657 ACGATGTTTTCAGTGAAGAAAAGAAAGGGGAAGCTTCGTAAGGCATGGGAGGGAAGTAAA 716
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 658 ACGATGTTTTCAGTGAAGAAGAGGAAGGGGAAGCTTCGCAAGGCATGGGAGGGAAGTAAA 717
Query 717 GTTATTTACAACGTAGCATCATGGAGCGCAACTGCGATAGGGATATATCAAAACCCGATG 776
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 718 GTTATTTACAACGTAGCATCATGGAGCGCAACCGCGATAGGGATATATCAAAACCCTATG 777
Query 777 ATCCTGAGTATTGCATCCAAAGCATTCTGGATGTCGTGCCAGGCTATATCGAAGCTTGTC 836
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 ATACTGAGTATTGCATCCAAAGCATTCTGGATGTCGTGCCAGGCTATATCAAAGCTTGTC 837
Query 837 TGAACAAATCTCACATGATGATCATATAAGTCTACAACAAGACTTGGCAATGTTTTATAT 896
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 TGAACAAATCTCACATGATGATCATATAAGTCTACAACAAGCCTTGGCAATGTTTTATAT 897
Query 897 ATC-ATTAAATTT-ATCTCCTGTACAAATGCCAT-TTGTTGCCTCTTCTCTCTGTGTGTG 953
| | |||| || | ||| |||| | || | | |||||||||||||||||
Sbjct 898 CTGTAC-AAATGCCAT-T--TGT-----TGCC-TCTTCTAG--TCTTCTCTCTGTGTGTG 945
Query 954 TTATGGCTCCTCTCTTTTCCATTGTATCCTCAACATGCAATTTTAATGATTGATTTGATC 1013
||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 946 TTATG-CTCCTCTCTTTTCCATTGTATTCTCAACATGCAATTTTAGTGATTGATTTGATC 1004
Query 1014 TTAATTTG 1021
||||||||
Sbjct 1005 TTAATTTG 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5