BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24630.1 Length=1519 Score E Sequences producing significant alignments: (Bits) Value Ahg945637 jgi|Araly1|945637|scaffold_701866.1 1991 0.0 Ahg495060 jgi|Araly1|495060|fgenesh2_kg.8__876__AT5G50020.1 728 0.0 > Ahg945637 jgi|Araly1|945637|scaffold_701866.1 Length=1267 Score = 1991 bits (1078), Expect = 0.0 Identities = 1191/1246 (96%), Gaps = 5/1246 (0%) Strand=Plus/Plus Query 276 GCTTTAATCTTCTTCTCTCCATGACACAACGGGTATTCCAAGTCTGGAAAGGAAGCAATA 335 |||||| |||||||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct 1 GCTTTATTCTTCTTCTCCCCATGACAAAACGAGTATTCCAAGTCTGGAAAGGAAGCAATA 60 Query 336 AATTCATCCTGGGTGGGAGATTGATATTTGGACCAGATGCTAGGTCACTGCCTCTTACCT 395 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATTCATCCTTGGTGGGAGATTGATATTTGGACCAGATGCTAGGTCACTGCCTCTTACCT 120 Query 396 TGCTATTGATCATAGTTCCGGTTGTTTTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCC 455 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGCTATTGATCATAGTTCCAGTTGTTTTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCC 180 Query 456 ATGAGTTCTCTCCCTACAATGCGGGATATGCTATCATGGTGGTAGCAATTCTTTTCACTA 515 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 ATGAGTTCTCTCCCTACAATGCGGGATATGCTATCTTGGTGGTAGCAATTCTTTTCACTA 240 Query 516 TTTATGTATTGATCCTCCTCTTCTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAA 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTTATGTATTGATCCTCCTCTTCTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAA 300 Query 576 ATTCGCATCCACCAGAGGAAGACCTACGTTATGAGACAACTGTATCAGCTGATGGAAGAC 635 ||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct 301 ATTTGCATCCACCAGAGGAAGAACTACGCTATGAGACAACAGTATCAGCTGATGGAAGAC 360 Query 636 AAACACCGAGTGTTCAAATTCCCAGGACGAAAGAAGTCATTGTTAATGGCGTTTCTGTTA 695 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 361 AAACACCAAGTGTTCAAATTCCCAGGACGAAAGAAGTCATGGTTAATGGTGTTTCTGTTA 420 Query 696 GAGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCTCGCTGCTCTCATTGCTCCA 755 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 421 GAGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCCCGCTGCTCTCATTGTTCCA 480 Query 756 TATGCAACAACTGTGTTGAGCGCTTTGATCATCATTGCCCATGGGTGGGACAATGCATTG 815 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 481 TATGCAACAACTGTGTTGAGCGATTTGATCATCATTGCCCATGGGTGGGCCAATGCATTG 540 Query 816 GACTGAGAAACTATAGGTATTTCTTTATGTTTGTTTCTTCGTCAACACTTCTCTGCATCT 875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 541 GACTGAGAAACTATAGGTATTTCTTTATGTTTGTTTCTTCGTCAACACTTCTCTGCGTCT 600 Query 876 ATATTTTCTCGATGTCGGCGGTATACATCAAGATTCTGATGGATCATCAACAAGCAACTG 935 ||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||| Sbjct 601 ATATTTTCTCGATGTCGGCCATATACATCAAGATTCTGATGAATGATCAACAAGGAACTG 660 Query 936 TGTGGAGGGCAATGAAAGAATCACCTTGGGCTGTTGTGTTGATGATATATTGCTTTATTG 995 ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 661 TGTGGAGGGCAATGAAAGAATCACCTTGGTCAGTTGTGCTGATGATATATTGCTTTATTG 720 Query 996 CCCTGTGGTTTGTTGGAGGGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGA 1055 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CCCTATGGTTTGTTGGAGGGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGA 780 Query 1056 CAACCTATGAGAAACTCCGGTACAGGTCATCACACAGCAGGAGCATTGTCTATAACCGTG 1115 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 781 CAACCTATGAGAAACTCCGGTACAGATCATCACACAGCAGGAGCATTGTATATAACCGTG 840 Query 1116 GCTGTCCAAACAATTTCCTGGAAGTTTTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACT 1175 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 841 GCTGTCCAAACAATTTCCTGGAAGTATTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACT 900 Query 1176 TTAGAGCCTTCATCGAAGAAGAACCCCCAAGAGTTATTACTCTGCCTAGCACCACCAGGG 1235 ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| Sbjct 901 TTAGAGCCTTCATCGAAGAAGAACCTCCAAGAGTTGTTACCCTGCCTAGCACCACCAGGG 960 Query 1236 AATCAGGGGAAGCAGAAGACGAAAATGTGACC-CGGCGACAGAAAGTGGAAGACGATCTA 1294 |||||||||||||||| || ||||||| | || ||||||||||||||||||||||| ||| Sbjct 961 AATCAGGGGAAGCAGAGGATGAAAATGGG-CCTCGGCGACAGAAAGTGGAAGACGACCTA 1019 Query 1295 GACATTGGAGACGATCTAATGAATCTCTCACGGCGTTGTAATGCAGAAGATGCCAACAAC 1354 ||||||||||| ||| | || |||||||||| |||||||||||||||||| ||||||||| Sbjct 1020 GACATTGGAGAAGATATTATTAATCTCTCACAGCGTTGTAATGCAGAAGAGGCCAACAAC 1079 Query 1355 AATCAGCCTCATCACACATTGGACATAGACCATGAGAGAGCAGGCTCGATAAGGACAGAA 1414 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1080 AATCAGCCTCATCACACATTGGACATTGACCATGAGAGAGCAGGCTCGATAAGGACAGAA 1139 Query 1415 GCAAGACATGAAAGCTGGGGAAGAAGAAGTGGGAGCTGGGATGTAGCAGCA--A-CAGAT 1471 ||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1140 GCAAGGCATGGAAGCTGGGGAAGAAGAAGTGGGAGCTGGGATGTAGCAGCAGCAACAGAT 1199 Query 1472 GTGAGGGAAAGTCGAAGCTACGCAACAGCAAAGGATGGAAGGGGAT 1517 ||||||||||| ||||||||||||||||||||||| | |||||||| Sbjct 1200 GTGAGGGAAAGCCGAAGCTACGCAACAGCAAAGGAAGCAAGGGGAT 1245 > Ahg495060 jgi|Araly1|495060|fgenesh2_kg.8__876__AT5G50020.1 Length=1709 Score = 728 bits (394), Expect = 0.0 Identities = 819/1016 (81%), Gaps = 61/1016 (6%) Strand=Plus/Plus Query 304 ACGGGTATTCCAAGTCTGGAAAGGAAGCAATAAATTCATCCTGGGTGGGAGATTGATATT 363 |||||| ||| ||| |||||| ||||| ||||| || | | |||||||||||||| || Sbjct 177 ACGGGTCTTCGAAGCCTGGAAGGGAAGTAATAAGTTTTTATTTGGTGGGAGATTGATTTT 236 Query 364 TGGACCAGATGCTAGGTC-ACTGCCTCTTACCTTGCTATTGATCATAGTTCC-GGTTGTT 421 ||| || |||||| |||| | | ||| ||||||| || | |||||| ||| | ||| | Sbjct 237 TGGGCCTGATGCTTGGTCTA-TTCCTTTTACCTTCCTGCTCATCATAACTCCAGTTTG-T 294 Query 422 TTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCCATGAGTTCTCT-CCCTACAATGCGGG 480 || || | ||||||||| |||| || ||||||| ||| ||| | || ||||||| || Sbjct 295 TTCTTTTCTGTATTTGTTGCAACACATCTTCGCCGCGAGCTCT-TACCAAACAATGCCGG 353 Query 481 ATATGCT-ATCATGGTGGTAGCAATTCT-TTTCACTAT-TTATGTATTGATCCTCCTCTT 537 | ||| | || | |||| || | | || ||| ||| | || |||| ||||||| ||||| Sbjct 354 ACATG-TGTTCTTAGTGGCAGGAGTCCTATTT-ACTGTCTT-TGTACTGATCCTTCTCTT 410 Query 538 CTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAAATTCGCATCCACCAGAGGAAGA 597 | |||| ||||| || |||||||| || ||||| ||||||| ||||| ||||||||||| Sbjct 411 CCTCACTTCTGCGCGGGATCCTGGAATCGTTCCAAGAAATTCACATCCGCCAGAGGAAGA 470 Query 598 CCTACGTTATGAGACAACTGTATC-AGCTGATGGAAGACAAACACCGAGTGTTCAAATTC 656 ||| | ||||| ||||||||||| || |||||||||||||||||| | ||||||||||| Sbjct 471 ACTATGCTATGATACAACTGTATCAAG-TGATGGAAGACAAACACCCACTGTTCAAATTC 529 Query 657 CCAGGACGAAAGAAGTCATTGTTAATGGCGTTTCTGTTAGAGTGAAATACTGTGATACAT 716 | |||||||| |||||||| ||| ||||||||||||||||||| ||||| |||||||||| Sbjct 530 CTAGGACGAAGGAAGTCATGGTTTATGGCGTTTCTGTTAGAGTTAAATATTGTGATACAT 589 Query 717 GCATGCTTTA-CAGGCCTCCTCGCTGCTCTCATTGCTCCATATGCAACAACTGTGTTGAG 775 |||||||||| | |||||||||| ||||| ||||| ||||| |||||||||||||||||| Sbjct 590 GCATGCTTTATC-GGCCTCCTCGTTGCTCCCATTGTTCCATTTGCAACAACTGTGTTGAG 648 Query 776 CGCTTTGATCATCATTGCCCATGGGTGGGACAATGCATTGGACTGAGAAACTATAGGTAT 835 |||||||||||||||||||| | ||| | | | | | ||||||||| Sbjct 649 CGCTTTGATCATCATTGCCC-T---TGG-A----G-A----A---A----CTATAGGTAC 687 Query 836 TTCTTTATGTTTGTTTCTTCGTCAAC-ACTTCTCTGCATCTATATTTTCTCGATGTCGGC 894 ||||||||||||||||||||| |||| | ||||||||||||| ||||| ||||||||||| Sbjct 688 TTCTTTATGTTTGTTTCTTCGGCAACTA-TTCTCTGCATCTACATTTTTTCGATGTCGGC 746 Query 895 GGTATACATCAAGATTCTGATGGATCATCAA-CAAGCAACTGTGTGGAGGGCAATGAAAG 953 ||||||||||| |||||||||| || | | |||| |||||||||||||||||| || Sbjct 747 ATTATACATCAAGGTTCTGATGGA-CAACCATCAAGGTACTGTGTGGAGGGCAATGCGAG 805 Query 954 AATCACCTTGGGCTGTTGTGTTGATGATATATTGCTTTATTGCCCTGTGGTTTGTTGGAG 1013 ||||||| ||||| ||| || |||||||||||||||||||| |||| ||||||||||||| Sbjct 806 AATCACCCTGGGCGGTTATGCTGATGATATATTGCTTTATTTCCCTTTGGTTTGTTGGAG 865 Query 1014 GGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGACAACCTATGAGAAACTCC 1073 |||| || | |||||||||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 866 GGCTTACTGGGTTTCACTTGTACCTCATTAGCACAAACCAGACGACCTATGAGAATTTCC 925 Query 1074 GGTACAGGTCATCACACAGCAGGAGCATTGTCTATAACCGTGGCTGTCCAAACAATTTCC 1133 ||||||| ||| ||| | ||| | || || ||||||||||| ||| |||||||||| | Sbjct 926 GGTACAGATCAG-ACA-A-CAGAATCAACGTTTATAACCGTGGGTGTTCAAACAATTTTC 982 Query 1134 TGGA-AGTTTTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACTTTAGAGCCTTCATCGAA 1192 | || | |||| ||||||| || || ||||||||||| |||| ||||| |||||| || Sbjct 983 TTGAGACATTTT-GCTCAAAAGTTAAACCCTCGAGGAATGACTTCAGAGCGTTCATCAAA 1041 Query 1193 GAAGAACCCCCAAG-AGTTATTAC-TCTGCCTAGCACCACCAGGGAATC-AG-GG--GAA 1246 |||||| | ||||| | | ||||| | || ||| ||| | ||||| | | || ||| Sbjct 1042 GAAGAATCTCCAAGGAAT-ATTACAT-TGGCTACCAC-AT--GGGAA-CGACCGGAAGAA 1095 Query 1247 GCAGAAGACGAAAAT-GTGACC--CGGCGACAGAAAGTGGAAGACGATCTAGACAT 1299 ||||| || |||||| | || ||||| ||||| |||||||||||||||||||| Sbjct 1096 GCAGAGGAAGAAAATAGGGAGGAACGGCGTCAGAAGGTGGAAGACGATCTAGACAT 1151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56868735785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5