BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24630.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945637 jgi|Araly1|945637|scaffold_701866.1 1991 0.0
Ahg495060 jgi|Araly1|495060|fgenesh2_kg.8__876__AT5G50020.1 728 0.0
> Ahg945637 jgi|Araly1|945637|scaffold_701866.1
Length=1267
Score = 1991 bits (1078), Expect = 0.0
Identities = 1191/1246 (96%), Gaps = 5/1246 (0%)
Strand=Plus/Plus
Query 276 GCTTTAATCTTCTTCTCTCCATGACACAACGGGTATTCCAAGTCTGGAAAGGAAGCAATA 335
|||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 GCTTTATTCTTCTTCTCCCCATGACAAAACGAGTATTCCAAGTCTGGAAAGGAAGCAATA 60
Query 336 AATTCATCCTGGGTGGGAGATTGATATTTGGACCAGATGCTAGGTCACTGCCTCTTACCT 395
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTCATCCTTGGTGGGAGATTGATATTTGGACCAGATGCTAGGTCACTGCCTCTTACCT 120
Query 396 TGCTATTGATCATAGTTCCGGTTGTTTTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCC 455
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCTATTGATCATAGTTCCAGTTGTTTTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCC 180
Query 456 ATGAGTTCTCTCCCTACAATGCGGGATATGCTATCATGGTGGTAGCAATTCTTTTCACTA 515
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 ATGAGTTCTCTCCCTACAATGCGGGATATGCTATCTTGGTGGTAGCAATTCTTTTCACTA 240
Query 516 TTTATGTATTGATCCTCCTCTTCTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTATGTATTGATCCTCCTCTTCTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAA 300
Query 576 ATTCGCATCCACCAGAGGAAGACCTACGTTATGAGACAACTGTATCAGCTGATGGAAGAC 635
||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 301 ATTTGCATCCACCAGAGGAAGAACTACGCTATGAGACAACAGTATCAGCTGATGGAAGAC 360
Query 636 AAACACCGAGTGTTCAAATTCCCAGGACGAAAGAAGTCATTGTTAATGGCGTTTCTGTTA 695
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 361 AAACACCAAGTGTTCAAATTCCCAGGACGAAAGAAGTCATGGTTAATGGTGTTTCTGTTA 420
Query 696 GAGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCTCGCTGCTCTCATTGCTCCA 755
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 421 GAGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCCCGCTGCTCTCATTGTTCCA 480
Query 756 TATGCAACAACTGTGTTGAGCGCTTTGATCATCATTGCCCATGGGTGGGACAATGCATTG 815
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 481 TATGCAACAACTGTGTTGAGCGATTTGATCATCATTGCCCATGGGTGGGCCAATGCATTG 540
Query 816 GACTGAGAAACTATAGGTATTTCTTTATGTTTGTTTCTTCGTCAACACTTCTCTGCATCT 875
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GACTGAGAAACTATAGGTATTTCTTTATGTTTGTTTCTTCGTCAACACTTCTCTGCGTCT 600
Query 876 ATATTTTCTCGATGTCGGCGGTATACATCAAGATTCTGATGGATCATCAACAAGCAACTG 935
||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||
Sbjct 601 ATATTTTCTCGATGTCGGCCATATACATCAAGATTCTGATGAATGATCAACAAGGAACTG 660
Query 936 TGTGGAGGGCAATGAAAGAATCACCTTGGGCTGTTGTGTTGATGATATATTGCTTTATTG 995
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 661 TGTGGAGGGCAATGAAAGAATCACCTTGGTCAGTTGTGCTGATGATATATTGCTTTATTG 720
Query 996 CCCTGTGGTTTGTTGGAGGGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGA 1055
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCCTATGGTTTGTTGGAGGGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGA 780
Query 1056 CAACCTATGAGAAACTCCGGTACAGGTCATCACACAGCAGGAGCATTGTCTATAACCGTG 1115
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 781 CAACCTATGAGAAACTCCGGTACAGATCATCACACAGCAGGAGCATTGTATATAACCGTG 840
Query 1116 GCTGTCCAAACAATTTCCTGGAAGTTTTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACT 1175
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 841 GCTGTCCAAACAATTTCCTGGAAGTATTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACT 900
Query 1176 TTAGAGCCTTCATCGAAGAAGAACCCCCAAGAGTTATTACTCTGCCTAGCACCACCAGGG 1235
||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 901 TTAGAGCCTTCATCGAAGAAGAACCTCCAAGAGTTGTTACCCTGCCTAGCACCACCAGGG 960
Query 1236 AATCAGGGGAAGCAGAAGACGAAAATGTGACC-CGGCGACAGAAAGTGGAAGACGATCTA 1294
|||||||||||||||| || ||||||| | || ||||||||||||||||||||||| |||
Sbjct 961 AATCAGGGGAAGCAGAGGATGAAAATGGG-CCTCGGCGACAGAAAGTGGAAGACGACCTA 1019
Query 1295 GACATTGGAGACGATCTAATGAATCTCTCACGGCGTTGTAATGCAGAAGATGCCAACAAC 1354
||||||||||| ||| | || |||||||||| |||||||||||||||||| |||||||||
Sbjct 1020 GACATTGGAGAAGATATTATTAATCTCTCACAGCGTTGTAATGCAGAAGAGGCCAACAAC 1079
Query 1355 AATCAGCCTCATCACACATTGGACATAGACCATGAGAGAGCAGGCTCGATAAGGACAGAA 1414
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 AATCAGCCTCATCACACATTGGACATTGACCATGAGAGAGCAGGCTCGATAAGGACAGAA 1139
Query 1415 GCAAGACATGAAAGCTGGGGAAGAAGAAGTGGGAGCTGGGATGTAGCAGCA--A-CAGAT 1471
||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1140 GCAAGGCATGGAAGCTGGGGAAGAAGAAGTGGGAGCTGGGATGTAGCAGCAGCAACAGAT 1199
Query 1472 GTGAGGGAAAGTCGAAGCTACGCAACAGCAAAGGATGGAAGGGGAT 1517
||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 1200 GTGAGGGAAAGCCGAAGCTACGCAACAGCAAAGGAAGCAAGGGGAT 1245
> Ahg495060 jgi|Araly1|495060|fgenesh2_kg.8__876__AT5G50020.1
Length=1709
Score = 728 bits (394), Expect = 0.0
Identities = 819/1016 (81%), Gaps = 61/1016 (6%)
Strand=Plus/Plus
Query 304 ACGGGTATTCCAAGTCTGGAAAGGAAGCAATAAATTCATCCTGGGTGGGAGATTGATATT 363
|||||| ||| ||| |||||| ||||| ||||| || | | |||||||||||||| ||
Sbjct 177 ACGGGTCTTCGAAGCCTGGAAGGGAAGTAATAAGTTTTTATTTGGTGGGAGATTGATTTT 236
Query 364 TGGACCAGATGCTAGGTC-ACTGCCTCTTACCTTGCTATTGATCATAGTTCC-GGTTGTT 421
||| || |||||| |||| | | ||| ||||||| || | |||||| ||| | ||| |
Sbjct 237 TGGGCCTGATGCTTGGTCTA-TTCCTTTTACCTTCCTGCTCATCATAACTCCAGTTTG-T 294
Query 422 TTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCCATGAGTTCTCT-CCCTACAATGCGGG 480
|| || | ||||||||| |||| || ||||||| ||| ||| | || ||||||| ||
Sbjct 295 TTCTTTTCTGTATTTGTTGCAACACATCTTCGCCGCGAGCTCT-TACCAAACAATGCCGG 353
Query 481 ATATGCT-ATCATGGTGGTAGCAATTCT-TTTCACTAT-TTATGTATTGATCCTCCTCTT 537
| ||| | || | |||| || | | || ||| ||| | || |||| ||||||| |||||
Sbjct 354 ACATG-TGTTCTTAGTGGCAGGAGTCCTATTT-ACTGTCTT-TGTACTGATCCTTCTCTT 410
Query 538 CTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAAATTCGCATCCACCAGAGGAAGA 597
| |||| ||||| || |||||||| || ||||| ||||||| ||||| |||||||||||
Sbjct 411 CCTCACTTCTGCGCGGGATCCTGGAATCGTTCCAAGAAATTCACATCCGCCAGAGGAAGA 470
Query 598 CCTACGTTATGAGACAACTGTATC-AGCTGATGGAAGACAAACACCGAGTGTTCAAATTC 656
||| | ||||| ||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct 471 ACTATGCTATGATACAACTGTATCAAG-TGATGGAAGACAAACACCCACTGTTCAAATTC 529
Query 657 CCAGGACGAAAGAAGTCATTGTTAATGGCGTTTCTGTTAGAGTGAAATACTGTGATACAT 716
| |||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 530 CTAGGACGAAGGAAGTCATGGTTTATGGCGTTTCTGTTAGAGTTAAATATTGTGATACAT 589
Query 717 GCATGCTTTA-CAGGCCTCCTCGCTGCTCTCATTGCTCCATATGCAACAACTGTGTTGAG 775
|||||||||| | |||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 590 GCATGCTTTATC-GGCCTCCTCGTTGCTCCCATTGTTCCATTTGCAACAACTGTGTTGAG 648
Query 776 CGCTTTGATCATCATTGCCCATGGGTGGGACAATGCATTGGACTGAGAAACTATAGGTAT 835
|||||||||||||||||||| | ||| | | | | | |||||||||
Sbjct 649 CGCTTTGATCATCATTGCCC-T---TGG-A----G-A----A---A----CTATAGGTAC 687
Query 836 TTCTTTATGTTTGTTTCTTCGTCAAC-ACTTCTCTGCATCTATATTTTCTCGATGTCGGC 894
||||||||||||||||||||| |||| | ||||||||||||| ||||| |||||||||||
Sbjct 688 TTCTTTATGTTTGTTTCTTCGGCAACTA-TTCTCTGCATCTACATTTTTTCGATGTCGGC 746
Query 895 GGTATACATCAAGATTCTGATGGATCATCAA-CAAGCAACTGTGTGGAGGGCAATGAAAG 953
||||||||||| |||||||||| || | | |||| |||||||||||||||||| ||
Sbjct 747 ATTATACATCAAGGTTCTGATGGA-CAACCATCAAGGTACTGTGTGGAGGGCAATGCGAG 805
Query 954 AATCACCTTGGGCTGTTGTGTTGATGATATATTGCTTTATTGCCCTGTGGTTTGTTGGAG 1013
||||||| ||||| ||| || |||||||||||||||||||| |||| |||||||||||||
Sbjct 806 AATCACCCTGGGCGGTTATGCTGATGATATATTGCTTTATTTCCCTTTGGTTTGTTGGAG 865
Query 1014 GGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGACAACCTATGAGAAACTCC 1073
|||| || | |||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 866 GGCTTACTGGGTTTCACTTGTACCTCATTAGCACAAACCAGACGACCTATGAGAATTTCC 925
Query 1074 GGTACAGGTCATCACACAGCAGGAGCATTGTCTATAACCGTGGCTGTCCAAACAATTTCC 1133
||||||| ||| ||| | ||| | || || ||||||||||| ||| |||||||||| |
Sbjct 926 GGTACAGATCAG-ACA-A-CAGAATCAACGTTTATAACCGTGGGTGTTCAAACAATTTTC 982
Query 1134 TGGA-AGTTTTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACTTTAGAGCCTTCATCGAA 1192
| || | |||| ||||||| || || ||||||||||| |||| ||||| |||||| ||
Sbjct 983 TTGAGACATTTT-GCTCAAAAGTTAAACCCTCGAGGAATGACTTCAGAGCGTTCATCAAA 1041
Query 1193 GAAGAACCCCCAAG-AGTTATTAC-TCTGCCTAGCACCACCAGGGAATC-AG-GG--GAA 1246
|||||| | ||||| | | ||||| | || ||| ||| | ||||| | | || |||
Sbjct 1042 GAAGAATCTCCAAGGAAT-ATTACAT-TGGCTACCAC-AT--GGGAA-CGACCGGAAGAA 1095
Query 1247 GCAGAAGACGAAAAT-GTGACC--CGGCGACAGAAAGTGGAAGACGATCTAGACAT 1299
||||| || |||||| | || ||||| ||||| ||||||||||||||||||||
Sbjct 1096 GCAGAGGAAGAAAATAGGGAGGAACGGCGTCAGAAGGTGGAAGACGATCTAGACAT 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5