BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24640.1 Length=840 Score E Sequences producing significant alignments: (Bits) Value Ahg492378 jgi|Araly1|492378|fgenesh2_kg.7__1811__AT4G24640.1 1284 0.0 > Ahg492378 jgi|Araly1|492378|fgenesh2_kg.7__1811__AT4G24640.1 Length=828 Score = 1284 bits (695), Expect = 0.0 Identities = 785/828 (95%), Gaps = 8/828 (1%) Strand=Plus/Plus Query 1 AAACAACACAAAACTGAATAACAACCGGAAACTTGAGCAACAAAACTTCCGACGCTAAGA 60 |||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1 AAACAACATAGAACTGAATAACAACCGAAAACTTGAGCAAGAAAACTTCCGACGCTAAGA 60 Query 61 GAAATGGCAACGTCCTCTGTTCTGTCCACCTTCGCTGCGGCGGCAATTACGTTGCAACTA 120 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 61 GAAATGGCAACGTCCTCTGTTCTGTCCACCTTCGCCGCGACGGCAATTACGTTGCAACTA 120 Query 121 CTCTTATCTCCTGCTTCAGCTTCCCCTCACATGAAATACATTGACGCCATCTGCGATCGT 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 CTCTTATCTCCTGCTTCAGCTTCCCCTCACATGAAATACATTGACGCCATCTGTGATCGT 180 Query 181 TCCCATGACCAAGCTTTCTGCGTTAAAACTTTGACTACCAATCCCCCTACAGCTGCTCCC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCCCATGACCAAGCTTTCTGCGTTAAAACTTTGACTACCAATCCCCCTACAGCTGCTCCC 240 Query 241 ATTGGCCTGCTTCCATTGTCGGAGGCTGTGATCAACTTGGCCATATCCCACGCGGAGAAG 300 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 241 ATTGGCCTGCTTCCATTGTCGGAGGCTGTGATCAACTTGGCCACATCACACGCGGAGAAG 300 Query 301 ACAGCGATTTTCGTAGATGAGACTGCGAAGAAAGATCCAACGGTGAAGGTTGCATTTACA 360 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 301 ACAGCGATTTTCGTAGATGAGACTGCGAAGAAAGATCCAACGGTGAAGACTGCGTTTACA 360 Query 361 GAGTGCCACAAGGCCTACTTGGCCGTGGCAGCTGATCTCAAGAGTGCAAATGTGAAGCTC 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAGTGCCACAAGGCCTACCTGGCCGTGGCAGCTGATCTCAAGAGTGCAAATGTGAAGCTC 420 Query 421 AAGGCATCCCCCGACACGGCTAACTACGACGTCAGGGCTTCCAGTGACAGCATGAGGCGC 480 ||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct 421 AAGGCATCCCCGGACACGGCTAACTACGACGTCAGGGCTTCAAGCGACAACATGAGGCGC 480 Query 481 GTGAATGAATTGGTTGGGAAAAACACTGACAAGGCTTCAACCACGCTCAAGGAAATGACA 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTGAATGAATTGGTTGGGAAAAACACTGACAAGGCTTCAACCACGCTCAAGGAAATGACT 540 Query 541 GTGCAGATGGAGAAACTACTTGATCTTGCAGCTGGAGCCGCCGATGCCGTTGATGACGAC 600 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 541 GTGCAGATGGAGAAACTCCTTGACCTTGCAGCTGGAGCCGCCGATGCCGTTGACGACGAC 600 Query 601 GATGAGAACATGCGCCTTCGCGTCTAATGGATGTTAAACCGAGCGGGTTTCGtttttttt 660 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 601 GATGAGAACATTCGCCTTCGCGTCTAATGGATGTTAAACCGAGCGGGTTTAGTTTTTTTT 660 Query 661 G----GTTCATAATACAAATGGAAATAAGTAAATGAATATGTATACATCACATAGAAACT 716 ||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct 661 TTTTTGTTCACAATACAAATGGAAATAAATAAATGAATATGTATACATTACATACAAACT 720 Query 717 GTGTTATGGTAAATTAGTAATTCAGTTTTTGAAATA-ATG-TG-GTT-AAGTTTTGCATC 772 |||||||| ||||||||||||||||||||||||||| || || | | |||||||||||| Sbjct 721 GTGTTATGATAAATTAGTAATTCAGTTTTTGAAATATATAATGTGCTCAAGTTTTGCATC 780 Query 773 TCTTACTAATTTTGTATCTATCTAATTTCTGGAGCAGGAAAATGACTC 820 ||||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct 781 TCTTACTAATTTTATATCGATCTAATTTCTGGAGCAGAAAAATGACTC 828 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31070177355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5