BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24650.1 Length=1050 Score E Sequences producing significant alignments: (Bits) Value Ahg945635 jgi|Araly1|945635|scaffold_701864.1 1585 0.0 > Ahg945635 jgi|Araly1|945635|scaffold_701864.1 Length=1002 Score = 1585 bits (858), Expect = 0.0 Identities = 951/997 (95%), Gaps = 2/997 (0%) Strand=Plus/Plus Query 48 GTGTTTCTCAATCTCAATTTACGACATGAAGTGTAATGACAAAATGGTTGTGATCATGGG 107 |||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1 GTGTTTATCAGTCTCAATTTACGACATGAATTGTAAAGACAAAATGGTTGTGATCATGGG 60 Query 108 TGCCACCGGTTCTGGCAAGTCATCACTCTCTGTTGATCTCGCTTTACATTTTAAAGCCGA 167 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 61 TGCCACCGGTTCTGGCAAGTCATCACTCTCGGTTGATCTCGCTTTACATTTCAAAGCCGA 120 Query 168 GATCATCAACTCTGACAAAATGCAGTTCTACGATGGCTTGAAGATCACCACGAATCAATC 227 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 GATCATCAACTCTGACAAAATGCAGTTCTATGATGGCTTGAAGATCACCACGAATCAATC 180 Query 228 GACCATTGAAGATCGACGTGGAGTGCCACATCACCTTCTCGGTGAACTAAACCCGGAGGC 287 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GACCATTTCGGATCGACGTGGAGTGCCACATCACCTTCTCGGTGAACTAAACCCGGAGGC 240 Query 288 TGGAGAAGTCACAGCGGCAGAATTTCGCGTTATGGCGGCTGAAGCCATCTCCGAGATTAC 347 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 TGGAGAAGTCACAGCAGCAGAATTTCGCGTTATGGCGGCTAAAGCCATCTCCGAGATTAC 300 Query 348 TCAACGTAAAA-AGCTCCCAATCCTTGCCGGTGGATCCAACTCATACATTCATGCTCTCC 406 ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 301 TCAACGTAAAACA-CTCCCAATCCTTGCCGGTGGATCCAACTCCTACATTCATGCACTCC 359 Query 407 TTGCAAAATCTTATGACCCTGAAAACTATCCGTTTTCTGATCACAAGGGCTCAATCTGCT 466 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTGCAAAATCTTATGATCCTGAAAACTATCCGTTTTCTGATCACAAGGGCTCAATCTGCT 419 Query 467 CCGAGTTGAAATATGATTGTTGTTTCATTTGGATAGATGTGGATCAGTCTGTGTTATTCG 526 | ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| Sbjct 420 CGGAGTTGAAATATGATTGTTGTTTCATTTGGATAGATGTGGACCAGCCTGTCTTATTCG 479 Query 527 AGTATCTTTCTTTACGTTTGGATCTTATGATGAAGTCAGGTATGTTCGAGGAGATCGCTG 586 ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 480 AGTATCTTTCTTTGCGTTTGGATGTGATGATGAAGTCAGGTATGTTCGAGGAGATCGCTG 539 Query 587 AGTTCCACCGCTCTAAGAAGGCCCCGAAAGAGCCATTGGGGATATGGAAGGCTATAGGAG 646 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 540 AGTTCCACCGCGCTAAGAAGGCCCCGAAAGAGCCATTGGGGTTATGGAAGGCTATAGGAG 599 Query 647 TGCAAGAGTTTGATGACTACCTCAAAATGTACAAGTGGGACAATGACATGGATAAATGGG 706 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 600 TGCAAGAGTTTGATGACTACCTCAAAAAGTACAAGTGGGACGATGACATGGATAAATGGG 659 Query 707 ACCCTATGAGAAAGGAGGCTTATGAGAAGGCGGTGAGAGCCATCAAAGAAAACACATTTC 766 || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 660 ACACTATGAGAAAGGAGGCTTATGAGAAGGCGGTGAGAGCGATCAAAGAAAACACGTTTC 719 Query 767 AGCTCACAAAGGATCAAATCACGAAGATCAACAAGCTGAGAAATGCCGGGTGGGACATAA 826 ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| Sbjct 720 AGCTCACAAAGGATCAAATCAAGAAGATCGACAAGTTGAGAAATGCCGGGTGGGACATAA 779 Query 827 AGAAGGTGGATGCTACAGCATCGTTTCGAGAGGCAATTAGGGCAGCCAAGGAAGGCGAAG 886 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 780 AGAAGGTGGATGCTACAGCATCGTTTCGAGAGGCAATTAGGGCAGCCAAGGAAGGTGAAG 839 Query 887 GTGTAGCCGAGATGCAGAGAAAGATATGGAACAAGGAAGTGTTGGAACCGTGTGTGAAGA 946 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 840 GTGTAGCCGAGATGCAGAGAAAGATATGGAACAATGAAGTGTTGGAACCGTGTGTGAAGA 899 Query 947 TTGTCAGGAGCCACTTGGACCAACCGATCAACTATTATTATTATTACTTTTATTTACTAA 1006 |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| Sbjct 900 TTGTCAAGAGCCACTTGGACCAGCCGATCAACTATTATTATTATTATTTTTATTTAATAA 959 Query 1007 AAAGATTTTTAAGTCTTAACTAGTTTGGACTAATATC 1043 ||||| | ||||||||||||||| ||||| ||||| Sbjct 960 AAAGACTCTTAAGTCTTAACTAGCAAGGACTCATATC 996 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39075989925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5