BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24650.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945635 jgi|Araly1|945635|scaffold_701864.1 1585 0.0
> Ahg945635 jgi|Araly1|945635|scaffold_701864.1
Length=1002
Score = 1585 bits (858), Expect = 0.0
Identities = 951/997 (95%), Gaps = 2/997 (0%)
Strand=Plus/Plus
Query 48 GTGTTTCTCAATCTCAATTTACGACATGAAGTGTAATGACAAAATGGTTGTGATCATGGG 107
|||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1 GTGTTTATCAGTCTCAATTTACGACATGAATTGTAAAGACAAAATGGTTGTGATCATGGG 60
Query 108 TGCCACCGGTTCTGGCAAGTCATCACTCTCTGTTGATCTCGCTTTACATTTTAAAGCCGA 167
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 61 TGCCACCGGTTCTGGCAAGTCATCACTCTCGGTTGATCTCGCTTTACATTTCAAAGCCGA 120
Query 168 GATCATCAACTCTGACAAAATGCAGTTCTACGATGGCTTGAAGATCACCACGAATCAATC 227
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 GATCATCAACTCTGACAAAATGCAGTTCTATGATGGCTTGAAGATCACCACGAATCAATC 180
Query 228 GACCATTGAAGATCGACGTGGAGTGCCACATCACCTTCTCGGTGAACTAAACCCGGAGGC 287
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACCATTTCGGATCGACGTGGAGTGCCACATCACCTTCTCGGTGAACTAAACCCGGAGGC 240
Query 288 TGGAGAAGTCACAGCGGCAGAATTTCGCGTTATGGCGGCTGAAGCCATCTCCGAGATTAC 347
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TGGAGAAGTCACAGCAGCAGAATTTCGCGTTATGGCGGCTAAAGCCATCTCCGAGATTAC 300
Query 348 TCAACGTAAAA-AGCTCCCAATCCTTGCCGGTGGATCCAACTCATACATTCATGCTCTCC 406
||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 301 TCAACGTAAAACA-CTCCCAATCCTTGCCGGTGGATCCAACTCCTACATTCATGCACTCC 359
Query 407 TTGCAAAATCTTATGACCCTGAAAACTATCCGTTTTCTGATCACAAGGGCTCAATCTGCT 466
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGCAAAATCTTATGATCCTGAAAACTATCCGTTTTCTGATCACAAGGGCTCAATCTGCT 419
Query 467 CCGAGTTGAAATATGATTGTTGTTTCATTTGGATAGATGTGGATCAGTCTGTGTTATTCG 526
| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 420 CGGAGTTGAAATATGATTGTTGTTTCATTTGGATAGATGTGGACCAGCCTGTCTTATTCG 479
Query 527 AGTATCTTTCTTTACGTTTGGATCTTATGATGAAGTCAGGTATGTTCGAGGAGATCGCTG 586
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 480 AGTATCTTTCTTTGCGTTTGGATGTGATGATGAAGTCAGGTATGTTCGAGGAGATCGCTG 539
Query 587 AGTTCCACCGCTCTAAGAAGGCCCCGAAAGAGCCATTGGGGATATGGAAGGCTATAGGAG 646
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 AGTTCCACCGCGCTAAGAAGGCCCCGAAAGAGCCATTGGGGTTATGGAAGGCTATAGGAG 599
Query 647 TGCAAGAGTTTGATGACTACCTCAAAATGTACAAGTGGGACAATGACATGGATAAATGGG 706
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 600 TGCAAGAGTTTGATGACTACCTCAAAAAGTACAAGTGGGACGATGACATGGATAAATGGG 659
Query 707 ACCCTATGAGAAAGGAGGCTTATGAGAAGGCGGTGAGAGCCATCAAAGAAAACACATTTC 766
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 660 ACACTATGAGAAAGGAGGCTTATGAGAAGGCGGTGAGAGCGATCAAAGAAAACACGTTTC 719
Query 767 AGCTCACAAAGGATCAAATCACGAAGATCAACAAGCTGAGAAATGCCGGGTGGGACATAA 826
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 720 AGCTCACAAAGGATCAAATCAAGAAGATCGACAAGTTGAGAAATGCCGGGTGGGACATAA 779
Query 827 AGAAGGTGGATGCTACAGCATCGTTTCGAGAGGCAATTAGGGCAGCCAAGGAAGGCGAAG 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 AGAAGGTGGATGCTACAGCATCGTTTCGAGAGGCAATTAGGGCAGCCAAGGAAGGTGAAG 839
Query 887 GTGTAGCCGAGATGCAGAGAAAGATATGGAACAAGGAAGTGTTGGAACCGTGTGTGAAGA 946
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 GTGTAGCCGAGATGCAGAGAAAGATATGGAACAATGAAGTGTTGGAACCGTGTGTGAAGA 899
Query 947 TTGTCAGGAGCCACTTGGACCAACCGATCAACTATTATTATTATTACTTTTATTTACTAA 1006
|||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 900 TTGTCAAGAGCCACTTGGACCAGCCGATCAACTATTATTATTATTATTTTTATTTAATAA 959
Query 1007 AAAGATTTTTAAGTCTTAACTAGTTTGGACTAATATC 1043
||||| | ||||||||||||||| ||||| |||||
Sbjct 960 AAAGACTCTTAAGTCTTAACTAGCAAGGACTCATATC 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5