BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G24700.1

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492372 jgi|Araly1|492372|fgenesh2_kg.7__1805__AT4G24700.1         689    0.0  


> Ahg492372 jgi|Araly1|492372|fgenesh2_kg.7__1805__AT4G24700.1
Length=499

 Score =  689 bits (373),  Expect = 0.0
 Identities = 463/503 (92%), Gaps = 20/503 (4%)
 Strand=Plus/Plus

Query  52   aaatggagaagaagaagaagagagatgaggaagaaacgagaggctaaagatgaaaatgaa  111
            ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |  
Sbjct  1    AAATGGAGACGAAGAAGAAGAGAGATGAGGAAGAAACAAGAGGCTAAAGATG-AAA-G-G  57

Query  112  gaagaagaagaggagaagaagaagagaCTAGAGTTGATGAAGGCAGCTGCGCAGGCTTGG  171
            || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  58   GAGGAAGAAGAGGAGAAGAAAAAGAGACTAGAGTTGATGAAGGCAGCTGCACAGGCTTGG  117

Query  172  CTCAGCCACTCCCAAACCTCAAAACATACTGTTTTAGAGTTCGATGCGCAGAGAAAGCAT  231
            ||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||
Sbjct  118  CTCAGCCACTCCCAAACCTCAAAACGTACCGTTTCAGAGTTCGAGGCGCAGAGAAAGCAT  177

Query  232  GCTTTTGTCAAAGGGAAGGCATCACGTTTCAAAACGGAAGCCTTGTCCGCAAAGCATCAT  291
            |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  178  GCTTTTGTCAAAGGAAAGGCTTCACGTTTCAAAACGGAGGCCTTGTCCGCAAAGCATCAT  237

Query  292  CCGTCGTTTTTGGATTGGGAATTCGGACAGTCGCTGTGGGATCCCTACGAGATTCTTTCG  351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  CCGTCGTTTTTGGATTGGGAATTCGGACAGTCGCTGTGGGATCCCTACGAGATTCTTTCG  297

Query  352  GTCTCTAAGAAACTGGAACGCGAACTCACTTTAGAAGAACAAACCTTCTCTTCTTCAGAT  411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  GTCTCTAAGAAACTGGAACGCGAACTCACTTTAGAAGAACAAACCTTCTCTTCTTCAGAT  357

Query  412  AATGATGGCCTCAAGAAGATGAAGAAGAAGAAAACTAGAGACAGCAGAAACAGCCTTAGG  471
            ||||  | ||||||||||| |||||||| |     ||| || |||||||| |||||||||
Sbjct  358  AATG--G-CCTCAAGAAGAAGAAGAAGA-G-----TAGGGATAGCAGAAATAGCCTTAGG  408

Query  472  AGTTTGTTCACTCGTTCGTCTTCAAAGAGATTCTAACAAACTCAT--C-A---TGTT--A  523
            |||||||| | |||||||||||||||||||||||||||||| |||  | |   ||||  |
Sbjct  409  AGTTTGTTTAATCGTTCGTCTTCAAAGAGATTCTAACAAACCCATGACGACGATGTTTTA  468

Query  524  CTACTTCAAACTTGTAAATTTTT  546
            |||||||||||||||||||||||
Sbjct  469  CTACTTCAAACTTGTAAATTTTT  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25427985639


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5