BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24730.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492370 jgi|Araly1|492370|fgenesh2_kg.7__1803__AT4G24730.2 1404 0.0
Ahg889689 jgi|Araly1|889689|Al_scaffold_0007_1675 651 0.0
> Ahg492370 jgi|Araly1|492370|fgenesh2_kg.7__1803__AT4G24730.2
Length=1376
Score = 1404 bits (760), Expect = 0.0
Identities = 826/858 (96%), Gaps = 4/858 (0%)
Strand=Plus/Plus
Query 87 AGCAATAGGTTGATGGGTTCTGCAGCCAGACAGCCTCTCTTCTCATTTGGTGTTATTGCT 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AGCAATAGGTTGATGGGTTCTGCAGCCAGACAGCCTCTCTTCTCATTTGGTGTTATTGCT 439
Query 147 GATGTTCAGTATGCTGATATTTCTGATGGCCGCTCTTTTTTAGGTGTTCCTAGGTATTAC 206
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 440 GATGTTCAGTATGCTGATATTCCAGATGGCCGCTCTTTTTTAGGTGTTCCTAGGTATTAC 499
Query 207 AGAAACAGCATCCTTGTCCTTCAAAGAGCTGTTGAAACTTGGAACCAACATGGTAACCTC 266
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAAACAGCATCCTTGTCCTCCAAAGAGCTGTTGAAACTTGGAACCAACATGGTAACCTC 559
Query 267 AAATTTGTTATTAACATGGGTGACATTGTTGATGGCTTTTGTCCCAAAGATCAATCCTTG 326
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 560 AAATTTGTTATTAACATGGGAGACATTGTTGATGGTTTTTGTCCCAAAGATCAATCCTTG 619
Query 327 GCTGCCACTAAGAAACTAGTCCATGAATTCGAGAAATTCAACGGTCCTGTGTATCATATG 386
||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 620 GCTGCCACTAAGAAACTGGTTCGTGAATTCGACAAATTCAACGGTCCTGTGTATCATATG 679
Query 387 ATTGGTAATCACTGCCTCTACAATCTCCCCCGCGAAGAGTTGCTTCCGTTGCTGAAGATC 446
||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 680 ATTGGCAATCACTGCCTCTACAATCTCCCCCGTGAAGAGTTGCTTCCGTTACTCAAGATC 739
Query 447 CCAGGTCGTGATGGCAATGCTTATTATGATTTCTCACCAACCCCGGAGTATAGAGTTGTG 506
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 740 CCAGGTCGTGATGGCAATGCTTATTATGATTTCTCACCAACCCCAGAGTATAGAATTGTG 799
Query 507 GTGTTAGATGGTTATGACATCAGTGCTGTTGGATGGCCTCAGGAACATCCTAATACTATC 566
||||||||| ||||||||||||||||| |||||||||| || || |||||||||||||||
Sbjct 800 GTGTTAGATTGTTATGACATCAGTGCTCTTGGATGGCCACAAGACCATCCTAATACTATC 859
Query 567 GCTGCATTGAAAATACTTGAAGAAAAGAACCCAAACACAGACAAAAACAGCCCCGCAGGG 626
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct 860 GCTGCATTGAAAATACTTGAAGAAAAGAACCCAAACTCAGAAAAAAACAGCCCCGC-GGG 918
Query 627 -CTTGAGGATGTTGCA-AGGAGATTTGTGAAGTATAATGGTGGTGTTGGGGAGAAACAGC 684
||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 919 TCTTGAGGATGTTG-AGAGGAGATTTGTCAAGTATAATGGTGGTGTTGGGGAGAAACAGC 977
Query 685 TGCAATGGCTAGACAGTGTTCTTCAGGATGCATCGAATTCAAACCAGAGAGTTATCGTAT 744
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 978 TGCAATGGCTAGACAGTGTTCTTCAGGATGCAACGAATTCAAACCAGAGAGTTATCGTAT 1037
Query 745 GTGGGCATGTGCCTATGAGCCCTGGTGTGGCATCCAAAGCAGCTTTGTTATGGAATTTTG 804
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1038 GTGGGCATGTGCCTATGAGCCCTGGTGTGGCATCCAAAGCAGCCTTGTTATGGAATTTTG 1097
Query 805 ATGAAGTGATGAACATTATACACAAGTATGACTCTGTTAAAGTTTGTTTGTCCGGACATG 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1098 ATGAAGTGATGAACATTATACACAAGTATGACTCTGTTAAAGTTTGTTTGTCCGGACACG 1157
Query 865 ATCATAAAGGAGGATACTTTGTTGATTCTCATGGGGTTCACCATAGATCCTTGGAAGCTG 924
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1158 ATCATAAAGGAGGATACTTTGTTGATTCTCATGGGGTTCACCATAGATCTTTGGAAGCTG 1217
Query 925 CCTTGGAGTGTCCCCCAG 942
|||||||||| |||||||
Sbjct 1218 CCTTGGAGTGCCCCCCAG 1235
Score = 80.5 bits (43), Expect = 4e-14
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 17 TTCCGCCTTGTCCGATTCTGCTTCACCTCTGCGCATTCCTTGTCTGATCCTCGCA 71
|||||||||||||||||||||||||||||||| | ||||||| | ||||||||||
Sbjct 2 TTCCGCCTTGTCCGATTCTGCTTCACCTCTGCTCGTTCCTTGCCCGATCCTCGCA 56
> Ahg889689 jgi|Araly1|889689|Al_scaffold_0007_1675
Length=624
Score = 651 bits (352), Expect = 0.0
Identities = 444/487 (91%), Gaps = 12/487 (2%)
Strand=Plus/Plus
Query 941 AGTTTTAG-AGGCTGGAAAAGATATGGTGACAATTACATGGAAGCTAAAGTCGTCGTCAG 999
|||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 141 AGTTTTAGAAGG-TGGAAAAGATATGGTGACAATTACATGGAAGCTAAA---GTCGTCAA 196
Query 1000 CCAAGGTCGACACGGATACTGCCTTCAAGACAATCCAAGTCAAGCTTTGTTATGCACCGA 1059
|||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 197 CCAAGGTCGACATGGATGCTGCCTTCAAGACAATCCAAATCAAGCTTTGTTATGCACCGA 256
Query 1060 TCAGCCAAGTTGATAGACCGTGGCGTAAGACTGATAACAAGCTCT-TCAAGGACAGA-AG 1117
||||||||||||||||||| ||||| ||| |||||||||| |||| | ||||||| | ||
Sbjct 257 TCAGCCAAGTTGATAGACCATGGCGGAAGTCTGATAACAAACTCTCT-AAGGACA-ATAG 314
Query 1118 TTGCCCTCATGAGATTGTGTCCAAGGCATACGACAAGACCCCCCAATCACTCGATTGGAC 1177
|||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 315 CTGCCCTCACGAGATTGTGTCCAAGCCATACAACATGACCCCCCAATCACTCGATTGGAC 374
Query 1178 AATCGGACTTGATATCCCCACTGGAACCTACTTCGTACGTGCCTATGGAATCGATGGAGA 1237
||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 375 CGTCGAACGTGATATCCCCACTGGAACCTATTTCGTACGTGCCTATGGAATTGATGGAGA 434
Query 1238 TGGCCACGAAGTTGCATACGGACAGAGCACGGATGAGGGAAGGACGACAAATCTCTTCAG 1297
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 435 TGGCCACGAAGTAGCATACGGACAAAGCACAGATGAGGGAAGGACGACAAATCTCTTCAG 494
Query 1298 TGTTCATGCCATAAGTGGTCATCACGTGGGGCTAGACATAGCATCCACATTTTTCAGCGT 1357
||||| |||| ||||||||||||||| ||| ||||||||||||| ||||||||| ||
Sbjct 495 CGTTCAGGCCA---GTGGTCATCACGTGGCGCTCGACATAGCATCCATATTTTTCAGTGT 551
Query 1358 CTTCTCCGTTGTTTCTCTGTTTGTCTTCTTTGTCATGGAGAAGAGGAAGGCCAAGTTAGA 1417
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 552 CTTCTCCGTTGTTTCTGTGTTTGTCGTCTTTGTCATGGAGAAGAGGAAGGCCAAGTTTGA 611
Query 1418 GCAAAGG 1424
|||||||
Sbjct 612 GCAAAGG 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5