BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24750.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492367 jgi|Araly1|492367|fgenesh2_kg.7__1800__AT4G24750.1 1753 0.0
> Ahg492367 jgi|Araly1|492367|fgenesh2_kg.7__1800__AT4G24750.1
Length=1170
Score = 1753 bits (949), Expect = 0.0
Identities = 1105/1177 (94%), Gaps = 23/1177 (2%)
Strand=Plus/Plus
Query 14 AAAGACTGCTTCAATGAAGCCAAAAC---T-A----TCC---AATAACTCGAAATTGACT 62
|||||||||||| ||||||||||||| | | ||| |||||||||||| |||||
Sbjct 1 AAAGACTGCTTCCATGAAGCCAAAACTGATAATCGGTCCAATAATAACTCGAAAGTGACT 60
Query 63 ACTCTTTTCTTTTGTCTCTGTTGTTGATTCGCAAAGGCGAAGATTATCCATCTTCTCAGT 122
|||||||| |||||||||| ||||||| |||||| ||||||| | | |||||||||||
Sbjct 61 ACTCTTTTATTTTGTCTCT-CTGTTGATGCGCAAACGCGAAGA-T-T--ATCTTCTCAGT 115
Query 123 TACTCCTACTGGAACCAAAAGCTCAG-A-ACCTTAAAACATGGAGTCTCTATCTCTTCCC 180
|||| ||||||||| ||||||| || | | ||| ||||||||||||||||||||||||
Sbjct 116 TACTACTACTGGAATTAAAAGCTTAGAAGAACTTGAAACATGGAGTCTCTATCTCTTCCT 175
Query 181 GTTCTAAATCCTCTGTTAGCTTCTGGTTCTAATCTTTTTAGAAACCAGCA-CTCGAGGAT 239
|||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||||||
Sbjct 176 GTTCTAAATCCTCTATTAGCTTCTAGTTCTAATCTGTTCAGAAACCAG-AGCTCGAGGAT 234
Query 240 GACCTCTTCAATGGTATCTTCACTTAAATCCCCCATTGGAGGCACATCGCTCTCCACTGT 299
|||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||| ||
Sbjct 235 GACCTCTTCAATGGTATCTTCACTTAAACCCCCCTTTGGAGGCACATCCCTTTCCACAGT 294
Query 300 TCGTCGCTTTGGAGTAGGTGTTGTTAGGATGCAAGCTGTTGATGAAGATATTGATTTGAA 359
||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 295 TCGCCGCTTTAGAGTAGGAGTTGTTAGGATGCAAGCTGTTGATGAAGATATTGATCTGAA 354
Query 360 GCAAATGAGAGACATAGCTGCTGCTAAAAAGCGTTGGGATGGTTTGTTAAGGGAAGGAAA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GCAAATGAGAGACATGGCTGCTGCTAAAAAGCGTTGGGATGGTTTGTTAAGGGAAGGAAA 414
Query 420 AGTGAAGCTTCTTACACCAAGAGAAGCAGGCTATGCTATTTCTCTTTCAAACAAACCTCT 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 415 AGTGAAGCTTCTTACACCAAGAGAAGCAGGGTATGCTATTTCTCTTTCAAACAAACCTCT 474
Query 480 CCTTGATGTTCGTCCCTCTAGCGAGCGCAACAAGGCATGGATTAAAGGCTCCACTTGGGT 539
|||||||| || ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 475 ACTTGATGTCCGCCCCTCTAGCGAGCGCAACAAGGCATGGGTTAAAGGCTCCACCTGGGT 534
Query 540 TCCTATCTTCGACAATGATGACAACCTTGACGCTGGAACTCTTTCCAAAAAAGTCACTAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCCTATCTTCGACAATGATGACAACCTTGACGCTGGAACTCTTTCCAAAAAAGTCACTAG 594
Query 600 TTTTGCTATGGGGGGATGGTGGAGTGGAGCACCTACACTATCTTTTAATAGGCTCTTCTT 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 TTTTGCTATGGGGGGATGGTGGAGTGGAGCACCTACATTATCTTTTAATAGGCTCTTCTT 654
Query 660 GTCAAAGGTTGAGGAGAAATTCCCAAAAGACTCAGAGCTGATTGTTGCTTGCCAAAAAGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTCAAAGGTTGAGGAGAAATTCCCAAAAGACTCAGAGCTGATTGTTGCTTGCCAAAAAGG 714
Query 720 ATTGAGATCCTTAGCTGCTTGCGAGCTACTATATAATGCAGGGTATGAGAATCTGTTCTG 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTGAGATCCTTAGCTGCTTGTGAGCTACTATATAATGCAGGGTATGAGAATCTGTTCTG 774
Query 780 GGTACAAGGTGGTTTAGAATCTGCTCAAGACGAGGATCTAGTGACAGAAGGTGTCCAACC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 GGTACAAGGTGGTTTAGAATCTGCTCAAGACGAGGATCTAGTGACAGAAGGTGTTCAACC 834
Query 840 CTTGAAGCTTGCTGGTATTGGAGGTTTTTCAGAGTTCCTCGGTTGGACAGACCAGCAAAG 899
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 835 CTTGAAGCTTGCTGGGATTGGAGGTTTTTCAGAGTTCCTTGGTTGGACAGACCAGCAAAG 894
Query 900 AGCTCAAGCTGCGAAAGAAGGTTGGGGGTACCGTTTGGTATATACTGCTCGTCTGTTTGG 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 895 AGCTCAAGCTGCGAAAGAAGGTTGGGGGTACCGTTTAGTATATACTGCTCGTCTGTTTGG 954
Query 960 AGTTGTTCTGGCTGCTGATGCTTTGTTCGTTGGGGCTCAGCAACTAGGCCATTATATTCA 1019
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 955 AGTTGTTCTGGCTGCTGATGCCTTGTTCGTTGGTGCTCAGCAACTAGGCCATTATATTCA 1014
Query 1020 GGAGTTAAGAGGCCATTAGGATCTCTCTTTAACCACGCTCCAAGTGGCTATATTTCTCTT 1079
||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||
Sbjct 1015 GGAGTTAAGAGGCCATTAGTACCTCTCTTTAACCAAGCTCCAAGTGGCTATATTTCTATT 1074
Query 1080 CAACaaaaaa-aaaTTGAAAAGTTTTGGAAGGTAGAGTAGTTGAAATAGATCAAAAATAC 1138
||| |||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1075 CAA-AAAAAAGAAATTGAAAAGTTTTGGAAGGTAGAGTAGTTGAAATAGTTAAAAAAGAC 1133
Query 1139 ATCTTTGAATCCT-GAAATTCCAATGGCAAACTTACC 1174
||||||||||||| ||||||||||||||||| |||||
Sbjct 1134 ATCTTTGAATCCTTGAAATTCCAATGGCAAAGTTACC 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5