BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24760.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492366 jgi|Araly1|492366|fgenesh2_kg.7__1799__AT4G24760.1 2331 0.0
> Ahg492366 jgi|Araly1|492366|fgenesh2_kg.7__1799__AT4G24760.1
Length=1444
Score = 2331 bits (1262), Expect = 0.0
Identities = 1390/1451 (96%), Gaps = 12/1451 (1%)
Strand=Plus/Plus
Query 69 TAAGGAATGTTTCCTCGCAATCATCATCATCATCACCATCTTCGTCTTCTTCTTTGAAAC 128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TAAGGAATGTTTCCTCGCAATCATCATCATCATCACCATCTTCGTCTTCTTCTTTGAATC 60
Query 129 CTCCAGCGACTTCCTCGTAGTTCTCTCACTTATACACTTACTAATACAGAGTAACAGAGA 188
|||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 61 CTCCAGCGACTTCCTCCTAG-T-TCTCACTTATACACTTACTAATACAGAGTGACAGAGA 118
Query 189 GAGACAGAGTGGACTC-TTCTTAGAGTAAGATGGGAGGTGTGACTTCTTCAATGGCGGCG 247
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 GAGAGAGAGTGGACTCTTTCTTAGAG-AAGATGGGAGGTGTGACTTCTTCAATGGCGGCG 177
Query 248 AAGTTGGCGTTTTTTCCTCCGAATCCGCCGTCGTACAAGCTGGTCAGAGATGAAACAACG 307
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 178 AAGTTGGCGTTTTTTCCTCCGAATCCGCCGTCGTACAAGCTGGTCAGGGATGAAGCAACG 237
Query 308 GAGCTTTTTCTAAT-GAGCCCTTTTCCCCATCGAGAAAATGTCGACATTTTGCGGCTGCC 366
||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGCTATTTCTCATGGA-CCCTTTTCCCCATCGAGAAAATGTCGACATTTTGCGGCTGCC 296
Query 367 CACGCGCCGAGGCACCGAAATCGTGGCCATGTACATCAGATACCCAATGGCCGTCACCAC 426
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 297 CACGCGCCGAGGCACCGAAATCGTGGCTATGTACATCAGATACCCTATGGCCGTCACTAC 356
Query 427 CCTTCTCTACTCTCATGGAAATGCTGCCGACATCGGTCAGATGTATGAGCTCTTCATCGA 486
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTTCTCTATTCACATGGAAATGCTGCCGACATCGGTCAGATGTATGAGCTCTTCATCGA 416
Query 487 GCTCAGTATTCACCTCCGCGTCAATTTGATGGGGTATGACTATTCAGGGTATGGCCAATC 546
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 GCTCAGTATTCATCTCCGCGTCAATTTGATGGGGTATGACTATTCAGGGTATGGTCAATC 476
Query 547 ATCAGGGAAGCCCACAGAACAAAACACTTATGCTGATATCGAGGCTGCTTACAAATGTCT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATCAGGGAAGCCCACAGAACAAAACACTTATGCTGATATCGAGGCTGCTTACAAATGTCT 536
Query 607 GGAAGAGAATTATGGGGCTAAGCAGGAGAACATTATTCTCTATGGTCAATCTGTTGGTAG 666
|||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 537 GGAAGAGAATTATGGGGCAAAGCAGGAGAACATTATCCTATATGGTCAATCTGTCGGTAG 596
Query 667 TGGTCCAACCGTGGACCTAGCTGCTCGTTTGCCTCGACTAAGAGCTTCCATTCTTCATAG 726
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 TGGTCCAACCGTCGACCTAGCTGCACGTTTGCCTCGACTAAGAGCTTCCATTCTTCATAG 656
Query 727 TCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACAT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACAT 716
Query 787 ATACAAGAACATTGACAAAATTACGCTGGTGAGGTGTCCTGTCCTCGTGATTCATGGAAC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATACAAGAACATTGACAAAATTACGCTGGTGAGGTGTCCTGTCCTCGTGATTCATGGAAC 776
Query 847 AGCGGATGATGTGGTTGACTTCTCTCATGGGAAGCAGCTTTGGGAACTCTGCCAAGAGAA 906
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 AGCGGATGATGTGGTTGACTTCTCACATGGGAAGCAGCTTTGGGAACTCTGCCAAGAGAA 836
Query 907 ATATGAACCGCTATGGCTCAAAGGTGGAAACCATTGTGATCTTGAACTCTTTCCCGAATA 966
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATATGAACCACTATGGCTCAAAGGTGGAAACCATTGTGATCTTGAACTCTTTCCCGAATA 896
Query 967 CATAGGCCATCTCAAGAAGTTTGTGAGCGCTGTGGAGAAATCTGCATCGAAAAGAAACAG 1026
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CATTGGCCATCTCAAGAAGTTTGTGAGCGCTGTGGAGAAATCTGCATCGAAAAGAAACAG 956
Query 1027 TTCTTTCTCAAGAAGAAGCATGGAAGGGTGTGAACAACCTCCTCGTCATAGTGTAGATGC 1086
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 957 TTCTTTCTCAAGAAGAAGCATGGAAGGGTGCGAACAACCTCCTCGGCATAGTGTAGATGC 1016
Query 1087 TCCAAGGAAGAGTAAGGACGGACGAGAAAAACCGAGGAAAAGCATAGACAGACTAAGGTT 1146
|||||||| || ||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 1017 CCCAAGGAAAAGCAAGGATGGGCGAGAAAAACCGAGGAAAAGCATAGACAGATTAAGGTT 1076
Query 1147 CCAGGGATACAAGTTGAGCCACATAGAGAAACCGGAGAAGCTGAAGGTTCCATTTGAAGA 1206
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1077 TCAGGGATACAAGTTGAGCCACATAGAGAAACCAGAGAAGCTGAAGGTTCCATTTGAGGA 1136
Query 1207 AATGGAGAGGTCAAGGAGAAGCGTGGACATATACAGAGATAAGTCTCAGCCGATGGAGAG 1266
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1137 AATGGAGAGGTCGAGGAGAAGCGTGGACATATACAGAGACAAGTCTCAGCCGATGGAGAG 1196
Query 1267 AGCACGTAAGAGTGTGGATTGGTTGGACAGAAGTCGAGCTACCGAATGAAAA--TGGAGG 1324
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1197 AGCGCGTAAGAGTGTGGATTGGTTGGACAGAAGTCGAGCTACCGAATGAAAAAATGG-GA 1255
Query 1325 GTTTGATGTCAAAAGATTGTATTTGAGTGTCGTTCAATTTATTGGGGTATGTGTTTGTAT 1384
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1256 -TTTGATGTCAAAAGATTGTATTTGAGTGTCGTTCAATTTATTGGGGTGTGTGTTTGTAT 1314
Query 1385 TGTAGTTTGTATGCCAAGTTAAAATACAACAG-GAAGATAGATTTAAACAAAGTATGATA 1443
||||||||||||| |||||||| |||||||| ||| ||||||||||||||||| | ||
Sbjct 1315 TGTAGTTTGTATGTCAAGTTAAGATACAACACAGAAAATAGATTTAAACAAAGTCGG-TA 1373
Query 1444 ACTTGTCTGACTGTTTCCCACACGACACTTTTGACTGGTTTTTAGTTTATTTGACAAGAT 1503
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 ACTTGTCTGACTGTTTCCCACACGACACTTTAGACTGGTTTTTAGTTTATTTGACAAGAT 1433
Query 1504 TCGTGTGCTGT 1514
||||||| |||
Sbjct 1434 TCGTGTGATGT 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5