BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24780.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492364 jgi|Araly1|492364|fgenesh2_kg.7__1797__AT4G24780.1 2455 0.0
Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1 115 1e-24
> Ahg492364 jgi|Araly1|492364|fgenesh2_kg.7__1797__AT4G24780.1
Length=1554
Score = 2455 bits (1329), Expect = 0.0
Identities = 1495/1572 (95%), Gaps = 24/1572 (2%)
Strand=Plus/Plus
Query 67 AGAGAGACAGTACTGTAATCCAAGTgagagagagagagaAATGAAAATGCAGACGAAGAA 126
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 1 AGAGAGACAGTACTGTAATCCAAGTGAGAGAGAAAGAAAAATGAAAATGCAGACGAATAA 60
Query 127 GCTCTTTATCACCATTGTCTCCTTTCTTCTCTATGCTCCATTGTTCTTATCTTCACCAGT 186
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 61 GCTCTTTATCACCATTGTCTCCTTTCTTCTCTACGCTCCATTGTTCCTATCTTCACCAGT 120
Query 187 TCCTGACCCTGAATCTGTCGTTGAAGAAGTTCACAAGAGCATTAATGCGTCGGTTGCAGG 246
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCAGACCCAGAATCTGTTGTTGAAGAAGTTCACAAGAGCATTAATGCGTCGGTTGCAGG 180
Query 247 AAGAAGGAAGTTAGGTTACCTCTCATGTACGACCGGTAACCCAATCGACGACTGTTGGCG 306
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 AAGAAGGAAGTTAGGTTATCTCTCATGTACCACCGGTAACCCAATCGACGACTGTTGGCG 240
Query 307 TTGTGACCCTCACTGGGAGCAACACCGTCAACGTCTCGCTGACTGCGCCATTGGATTCGG 366
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 241 ATGTGACCCACACTGGGAGCAGCACCGTCAACGTCTCGCCGACTGCGCCATTGGGTTCGG 300
Query 367 CAAAAACGCCATCGGTGGCCGTGACGGTCGGATCTACGTGGTCACCGACTCAGGAAACGA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAAAACGCCATCGGTGGCCGTGACGGTCGGATCTACGTGGTCACCGACTCAGGAAACGA 360
Query 427 CAACCCAGTTAGCCCCAAGCCCGGAACTTTAAGACACGCCGTGGTCCAAGACGAGCCACT 486
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CAACCCAGTTAGCCCCAAGCCCGGAACTTTAAGACACGCCGTGATCCAAGACGAGCCACT 420
Query 487 CTGGATCATCTTCCAACGAGACATGACGATTCAGCTCAAAGAAGAGCTAATCATGAACTC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTGGATCATCTTCCAACGAGACATGACGATTCAGCTCAAAGAAGAGCTAATCATGAACTC 480
Query 547 ATTCAAGACCATCGATGGCCGTGGTGCTTCCGTACACATCTCTGGTGGGCCTTGTATAAC 606
||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 481 TTTCAAGACCATTGATGGTCGTGGAGCTTCCGTACACATTTCTGGTGGGCCTTGTATAAC 540
Query 607 GATCCAGTACGTGACCAACATTATCATCCATGGGATTCATATCCATGATTGCAAGCAAGG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATCCAGTACGTGACCAACATTATCATCCATGGGATTCATATCCATGATTGCAAGCAAGG 600
Query 667 TGGCAACGCTATGGTGCGGAGCTCTCCACGGCATTTCGGGTGGAGAACGATATCGGACGG 726
||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 601 TGGGAACGCTATGGTGCGGAGCTCCCCACGGCACTTCGGATGGAGAACGATATCGGACGG 660
Query 727 TGATGGTGTCTCTATCTTTGGAGGAAGTCATGTTTGGGTTGACCATTGTTCGTTCTCTAA 786
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGACGGTGTCTCTATCTTTGGTGGAAGTCATGTTTGGGTTGACCATTGTTCGTTCTCTAA 720
Query 787 CTGTGAAGATGGACTTATTGATGCTATCATGGGCTCGACGGCTATCACTTTGTCTAACAA 846
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 721 TTGTGAAGATGGACTCATTGATGCTATAATGGGCTCAACGGCTATCACTTTGTCTAACAA 780
Query 847 TCATATGACACATCATGATAAGGTCATGTTGCTTGGTCATAGTGATACTTACAGTCGTGA 906
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCACATGACACATCATGATAAGGTCATGTTGCTTGGTCATAGTGATACTTACAGTCGTGA 840
Query 907 CAAGAATATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAAGGCCTTGTCCAAAGAAT 966
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGAATATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAAGGCCTTGTCCAAAGAAT 900
Query 967 GCCCAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGACTACACACATTGGGAGAT 1026
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCCCAGGTGTAGACATGGGTACTTCCATGTGGTGAACAATGACTACACACATTGGGAGAT 960
Query 1027 GTATGCGATTGGTGGAAGTGCTAATCCTACAATCAATAGTCAAGGGAACAGATTTTTGGC 1086
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTATGCGATTGGAGGAAGTGCTAATCCTACAATCAATAGTCAAGGGAACAGATTTTTGGC 1020
Query 1087 ACCCAATATCAGATTTAGCAAAGAAGTGACTAAGCATGAGGACGCGCCTGAGAGCGAGTG 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCCCAATATCAGATTTAGCAAAGAAGTGACTAAGCATGAGGACGCGCCTGAGAGCGAGTG 1080
Query 1147 GAAGAGATGGAATTGGAGATCTTCCGGAGATTTGTTGCTAAACGGTGCGTTTTTTACTCC 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GAAGAGATGGAATTGGAGATCTTCCGGAGATTTGTTGCTAAACGGTGCGTTTTTTACTCC 1140
Query 1207 GTCTGGTGGTGCAGCCTCGTCTAGCTATGCAAAGGCTTCGAGCCTTGGGGCTAAACCGTC 1266
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1141 GTCTGGTGGTGCAACCTCGTCTAGCTATGCCAAGGCTTCGAGCCTTGGGGCTAAACCGTC 1200
Query 1267 TTCTCTAGTTGGACCATTGACGTCTACTTCTGGTGCACTGAATTGCCGTAAAGGTTCCCG 1326
||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 1201 ATCTCTAGTTGGACCATTAACGTCTACTTCTGGTGCACTGAATTGCCGTAAGGGGTCTCG 1260
Query 1327 TTGCTGATTGTGGCTTAGTGGTCACACTTAAGTTTTTACCCCATT-AT--T-ATATAGGA 1382
||||||||||||||||||||||| ||||||||||||||||| ||| || | ||||||||
Sbjct 1261 TTGCTGATTGTGGCTTAGTGGTCGCACTTAAGTTTTTACCCAATTTATAATTATATAGGA 1320
Query 1383 AAAGGCAATTAAAGCCACCAATTAAGGGGGATTAAGTAGTGTAGTAAGACTTTCTTAATC 1442
|||||||||||||||||||||||||||||||| | | | |||| | ||
Sbjct 1321 AAAGGCAATTAAAGCCACCAATTAAGGGGGATC---T--T-T-------CTTT---A-TC 1363
Query 1443 CCTTGATTTACTCt-tttttttG-TTTGTTTATTCGGGTAAAATTGAAGGAGAATACAAC 1500
|||||||||||||| ||||||| ||| |||||| |||||||| ||||||||||||||||
Sbjct 1364 CCTTGATTTACTCTCTTTTTTTTCTTTCTTTATTTGGGTAAAACTGAAGGAGAATACAAC 1423
Query 1501 CTCTGGCTAGCTGCTCTCTAGGACCCTTCTTAAGGATTCTCTGTTTTAAGGAATCTTTAA 1560
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1424 CTCTGGCTTGCTGCTCT-TAGGAGCCTTCTTAAGGATTCTCTGTTTTAAGGAATCTTTAA 1482
Query 1561 ATTAGGTTAAAGTGTGGGAACAAGTGCAGATGTGTTGATCTTGATATTAATATAAATATG 1620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 ATTAGGTTAAAGTGTGGGAACAAGTGCAGATGTGTTGATCTTGATATTAATATAAATATA 1542
Query 1621 ATTTTGTGTCTT 1632
||||||||||||
Sbjct 1543 ATTTTGTGTCTT 1554
> Ahg471616 jgi|Araly1|471616|fgenesh2_kg.1__1570__AT1G14420.1
Length=1764
Score = 115 bits (62), Expect = 1e-24
Identities = 139/174 (80%), Gaps = 14/174 (8%)
Strand=Plus/Plus
Query 905 GACAAGAATATGCAAG-TTACCATTGCTTTTAACCATTTTGGTGAAG-GCCTT-GTCCAA 961
|||||||| |||| || | || |||| |||||||| || ||| ||| | || | ||
Sbjct 1041 GACAAGAAAATGC-AGATAACGGTTGCGTTTAACCACTTCGGT-AAGAG-ATTGGAACAG 1097
Query 962 AGAATGCC-CAGGTGTAGACATGGATAC-TTCCATGTGGTGAACAATGACTACACACATT 1019
|||||||| | | || ||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1098 AGAATGCCTC-GTTGCAGATATGGA-ACAATCCATGTGGTGAACAATGACTACACACATT 1155
Query 1020 GGGAGATGTATGCGATTGGTGGAAG--TGCTAATCCTACAATCAATAGTCAAGG 1071
|||| |||||||| |||||||||| || || |||||||| | |||||||||
Sbjct 1156 GGGAAATGTATGCAATTGGTGGAAACATG--AACCCTACAATTATTAGTCAAGG 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5