BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24820.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492356 jgi|Araly1|492356|fgenesh2_kg.7__1789__AT4G24820.1 2084 0.0
> Ahg492356 jgi|Araly1|492356|fgenesh2_kg.7__1789__AT4G24820.1
Length=1431
Score = 2084 bits (1128), Expect = 0.0
Identities = 1312/1398 (94%), Gaps = 23/1398 (2%)
Strand=Plus/Plus
Query 83 ctctctctctctcAGATCCGATTCAAGCTTTCCGATTTGCGATGGACGGTGGAGCGGAAG 142
||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 57 CTCTCTCTCTCTCAGATCCGATTCAAGCTCTCCGATTTGCAATGGACGGTGGTGCGGAAG 116
Query 143 GATCTCAGCAGCCTCACCTTATTCTAGCCAACAAGCTCTTCCTCCTCACTCATCCAGATG 202
||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||| ||||
Sbjct 117 GATCTCAGCAGCCTCACCTGATTCTAGCCCACAAACTCTTCCTTCTCACTCATCCCGATG 176
Query 203 TTCCAGACATCGAGAAAGTCCAGCTCAAGTCTGAGGTTTTGGATTTCATCAGATCCCATG 262
| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||
Sbjct 177 TCCCAGACATCGAGAAAGTCCAGCTCAAATCTGAGGTTTTGGATTTCATCAAATCCGATG 236
Query 263 GTATGGCTCCTTTGTACGAAACCCTAATTGCCTCTTCGGTGCTGGATTTGGATCAAAGCT 322
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 237 GTATGGCTCCCTTGTACGAAACCCTAACTGCCTCTTCGGTACTGGATTTGGATCAGAGCT 296
Query 323 TGTTAGAGTCTATGCGGGCCGCTAATGAAGAGGAGCTTAAGAAGCTCGACGAGAAGATTG 382
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 TGTTAGATTCTATGCGGGCAGCTAACGAAGAGGAGCTTAAGAAGCTCGACGAGAAGATTG 356
Query 383 CAGATGCAGAAGAAAATTTGGGTGAAAGTGAAGTTCGTGAAGCTCATCTTGCTAAGGCTC 442
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 CAGATGCAGAAGAAAATTTGGGTGAAAGTGAAGTACGTGAAGCTCATCTTGCTAAGGCTC 416
Query 443 TGTATTTCATCAGGATTAGTGATAAGGAGAAAGCTTTGGAGCAGCTAAAACTCACTGAAG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGTATTTCATCAGGATTAGTGATAAGGAGAAAGCTTTGGAGCAGCTAAAACTCACTGAAG 476
Query 503 GGAAAACTGTTGCTGTTGGACAAAAAATGGACGTGGTGTTTTATACGTTACAACTTGCTT 562
|||||||||||||||| || |||||||||||| |||| || || || || |||||||| |
Sbjct 477 GGAAAACTGTTGCTGTGGGGCAAAAAATGGACTTGGTATTCTACACATTGCAACTTGCCT 536
Query 563 TTTTCTATATGGACTTTGATCTGGTATCAAAGAGCATTGACAAAGCaaaaaaaTTGTTTG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTTTCTATATGGACTTTGATCTGGTATCAAAGAGCATTGACAAAGCAAAAAAATTGTTTG 596
Query 623 AAGAGGGTGGTGACTGGGAGAGGAAGAACCGGCTAAAGGTCTATGAAGGTTTGTACTGCA 682
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 AAGAGGGTGGTGACTGGGAGAGGAAGAACCGGCTAAAGGTCTATGAGGGTTTGTACTGCA 656
Query 683 TGTCCACCAGAAATTTTAAGAAGGCTGCCAGCTTATTCCTGGATTCTATATCAACCTTCA 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGTCCACCAGAAATTTTAAGAAGGCTGCCAGCTTATTCCTGGATTCTATATCAACCTTCA 716
Query 743 CAACATATGAAATTTTTCCATATGAGACCTTCATATTCTACACCGTCCTGACAAGCATCA 802
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 CAACATATGAAATTTTTCCATATGAGACCTTTATATTCTACACCGTCCTGACAAGCATCA 776
Query 803 TAACTTTGGACAGAGTTTCCCTTAAGCAAAAGGTCGTTGATGCACCTGAGATCTTAACCG 862
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 TAACTTTGGACAGAGTTTCCCTCAAGCAAAAGGTCGTTGATGCACCTGAGATCTTAACCG 836
Query 863 TGCTTGGGAAGATTCCATTCCTTTCTGAGTTTCTGAACTCCTTGTATGAGTGCCAGTACA 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGCTTGGGAAGATTCCATTCCTTTCTGAGTTTCTGAACTCCTTGTATGAGTGCCAGTACA 896
Query 923 AGGCGTTTTTCTCAGCATTTGCTGGAATGGCGGTGCAGATAAAGTATGACCGTTACTTGT 982
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 897 AGGCGTTTTTCTCAGCATTTGCTGGAATGGCGGAGCAGATAAAGTTTGACCGTTACTTGT 956
Query 983 ACCCGCATTTCCGGTTCTACATGAGGGAAGTCAGAACAGTGGTGTACTCTCAGTTTTTGG 1042
|||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 957 ACCCACATTTCCGGTTCTACATGAGGGAAGTTAGAACGGTGGTTTACTCTCAGTTTTTGG 1016
Query 1043 AATCTTACAAAAGTGTGACAGTTGAAGCAATGGCAAAGGCCTTTGGCGTTTCTGTCGATT 1102
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1017 AATCTTACAAGAGTGTGACAGTTGAAGCGATGGCAAAGGCCTTTGGCGTTTCGGTGGATT 1076
Query 1103 TCATAGACCAGGAGTTGTCGCGCTTCATTGCTGCTGGGAAGCTTCACTGTAAGATAGACA 1162
|||| || |||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 TCATTGATCAGGAGCTGTCACGCTTCATTGCTGCTGGGAAGCTTCACTGCAAGATAGACA 1136
Query 1163 AGGTTGCAGGTGTTTTGGAGACAAACCGTCCTGATGCAAAGAATGCACTTTACCAGGCAA 1222
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGGTTGCAGGTGTTCTGGAGACAAACCGTCCTGATGCAAAGAATGCACTTTACCAGGCAA 1196
Query 1223 CAATCAAGCAAGGGGATTTCTTGCTAAACCGAATCCAGAAGCTGTCTCGTGTGATCGATC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CAATCAAGCAAGGGGATTTCTTGCTAAACCGAATCCAGAAGCTGTCTCGTGTGATCGATC 1256
Query 1283 TGTGAGCATGCTACATGTTTCTGTTTCACTCTTTCGTCAAGCTTTGCAACTTGGAAACTC 1342
||||||||||||||||||| ||||| | ||||||| ||||||||||| |||||| |||||
Sbjct 1257 TGTGAGCATGCTACATGTTCCTGTTCCGCTCTTTCTTCAAGCTTTGCGACTTGGTAACTC 1316
Query 1343 CGAACGGTAGAATCTTAAGGTCTGAGAAACGATATGAACTTTGGATTTTGAGATGAATGG 1402
|||||||||| |||||||||||||||||||||| | | | || | | | | |
Sbjct 1317 AAAACGGTAGAAGCTTAAGGTCTGAGAAACGATAT-A--T--GAATCT--A-A--ACTT- 1365
Query 1403 CTGTAGTTTCTTTCATCAACTCTAGTTGGTTTGTCAGTGGTGAATTTCCCAAGAACAAAG 1462
|| || || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 -TG-AG--------ATGA--TCTAGTTGGTTTGTCAGTGGTGAATTTCCCAAGAACAAAG 1413
Query 1463 AGCAAGTTTAATCTCCAA 1480
|||||| |||||||||||
Sbjct 1414 AGCAAGCTTAATCTCCAA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5