BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24830.1 Length=1814 Score E Sequences producing significant alignments: (Bits) Value Ahg945614 jgi|Araly1|945614|scaffold_701843.1 2357 0.0 Ahg942788 jgi|Araly1|942788|scaffold_603332.1 259 5e-68 Ahg915144 jgi|Araly1|915144|Al_scaffold_0009_113 259 5e-68 > Ahg945614 jgi|Araly1|945614|scaffold_701843.1 Length=1528 Score = 2357 bits (1276), Expect = 0.0 Identities = 1436/1513 (95%), Gaps = 12/1513 (1%) Strand=Plus/Plus Query 118 ATGGCTGAAATCTCGGCGACTTCGTTT-C--CTTCTTCTTCTTCCTCTGCTCTCGTC-AT 173 ||||||||||||||||||||||||||| | |||||||||||||||||||||||| | | Sbjct 21 ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCTTCTTCCTCTGCTCTCG-CGTT 79 Query 174 CCGTAGCTCCCACAATGGTAGCTTAAAATGTCAGAATGTAGCTGTTCCAA-AAACTACTT 232 ||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 80 CCGTACCTCCCACAATGGTAGCTTAAAATGTCAGAATGTAGCTGTTCCAAGAACCT-CTT 138 Query 233 CCCAGTTCCAAGAGTTATCTCTGAAACGAAGCCAGCTTGTTGGCAATGCCGTTGTTACCG 292 ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 139 CCCAGTTTCAAGAGTTATCGGTGAGACGAAGCCAGCTTGTTGGCAATGCCGTTGTTACCG 198 Query 293 GTCATGTTACCGGATCCCGCAGCTGCAAGAATCAAGCTATTCGAGCTGTTCTATCCGGTG 352 ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| Sbjct 199 GTCATGTTACCGGATTCCGCAGCTGCAAGAATCAAGCAATCCGAGCTGTTCTATCCGGTG 258 Query 353 ATGGAACCGCCTTGACTACTGATTCAAAGGAGGCTGGACTTCGTGGAAAACTGA-AAAAG 411 ||||||| ||| || || |||||||||||||||||||||||||||||||||| | |||| Sbjct 259 ATGGAACTGCCCTGGCTGCTGATTCAAAGGAGGCTGGACTTCGTGGAAAACTTAGAAAA- 317 Query 412 GTCGTTCTAGCTTACAGTGGAGGCTTAGACACCTCTGTCATTGTGCCATGGCTTAAGGAG 471 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 318 GTCGTTCTAGCTTACAGTGGAGGCTTGGATACCTCTGTCATTGTGCCATGGCTTAAGGAG 377 Query 472 AACTATGGTTGTGAAGTTGTGTGCTTCACTGCTGATGTTGGTCAGGGCATAAAAGAGTTA 531 ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 378 AACTATGGTTGTGAAGTTGTGTGTTTCACCGCCGATGTTGGTCAGGGCATAAAAGAGTTG 437 Query 532 GAGGGTTTAGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCGTTAAGGATCTC 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 GAGGGTTTAGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCGTTAAGGATCTC 497 Query 592 ACAGAGGAGTTTGTGAAAGATTTCATCTTCCCTTGTCTTAGAGCTGGTGCCATCTATGAA 651 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 498 ACAGAGGAGTTTGTGAAAGATTACATATTCCCTTGTCTTAGAGCTGGTGCCATCTATGAA 557 Query 652 CGAAAATACTTGCTTGGTACCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTTGAT 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 CGAAAATACTTGCTTGGTACCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTTGAT 617 Query 712 GTAGCAGCAGAGGTTGGAGCTGATGCCGTTGCACATGGGTGTACTGGAAAAGGAAATGAC 771 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 618 GTAGCAGCAGAGGTTGGAGCTGATGCCGTTGCACATGGCTGTACTGGCAAAGGAAATGAC 677 Query 772 CAGGTTCGGTTTGAGCTCACCTTCTTTTCATTAAACCCTGAACTTAAAGTTGTGGCACCA 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 678 CAGGTTCGGTTTGAGCTCACCTTCTTTTCATTAAACCCTGAACTTAAAGTTGTGGCACCA 737 Query 832 TGGAGAGAATGGGAAATCCAAGGCCGAGAAGATGCTATTGAGTATGCAAAGAAGCATAAT 891 |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 738 TGGAGAGAATGGGAAATCCAAGGCAGAGAAGATGCTATTGAGTATGCCAAGAAGCATAAC 797 Query 892 GTTCCCGTCCCAGTGACAAAGAAGTCCATTTACAGCCGGGACAGAAACCTGTGGCACCTT 951 ||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct 798 ATTCCCGTCCCAGTGACAAAAAAATCTATTTACAGCCGGGACAGGAACCTGTGGCACCTT 857 Query 952 AGTCATGAGGGTGATCTATTGGAAGATCCAGCAAACGAGCCAAAGAAAGATATGTACATG 1011 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 858 AGTCATGAGGGTGATCTATTGGAAGATCCAGCAAATGAGCCAAAGAAAGATATGTACATG 917 Query 1012 ATGAGTGTGGATCCTGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGAA 1071 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 ATGAGTGTAGATCCTGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGAA 977 Query 1072 TCTGGACTTCCAGTGGCGCTGAACGGGAAGGCTCTGAGTCCAGCCACACTTCTGGCCGAG 1131 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 978 TCTGGAATTCCAGTGGCACTGAACGGGAAGGCTCTGAGTCCAGCCACACTTCTGGCCGAG 1037 Query 1132 CTAAACACAATAGGAGGAAAGCACGGGATTGGGCGGATTGACATGGTTGAGAACCGTCTG 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1038 CTAAACACAATAGGAGGAAAGCACGGGATTGGGCGGATTGACATGGTTGAGAACCGTCTG 1097 Query 1192 GTTGGGATGAAATCACGAGGTGTGTATGAAACTCCTGGAGGCACTATCCTCTTTGCAGCT 1251 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1098 GTTGGGATGAAATCACGAGGTGTCTATGAAACTCCTGGAGGCACCATCCTCTTTGCAGCT 1157 Query 1252 GTACAGGAACTAGAATCCCTCACTCTAGACAGAGAGAGTATTCAGGTAAAAGACACATTA 1311 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1158 GTACAAGAACTAGAATCCCTCACTCTAGACAGAGAGAGTATTCAGGTAAAAGACTCATTA 1217 Query 1312 GCACTGAAATATGCAGAGATGGTCTACGCAGGAAGATGGTTTGATCCGCTTAGGGAGTCC 1371 ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1218 GCACTGAAATACGCAGAGATGGTCTATGCGGGAAGATGGTTTGATCCGCTTAGGGAGTCC 1277 Query 1372 ATGGACGCTTTCATGGAGAAGATAACCGAGACAACCACGGGATCTGTGACACTGAAGCTG 1431 |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 1278 ATGGACGCTTTCATGGAGAAGATAACTGAGACAACCACGGGATCCGTGACACTAAAGCTG 1337 Query 1432 TACAAAGGATCTGTGTCGGTTACAGGGCGTCAGAGTCCTAACAGTCTGTATAGACAGGAC 1491 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1338 TACAAAGGATCTGTGTCGGTTACAGGGCGTAAGAGTCCTAACAGTCTGTATAGACAGGAC 1397 Query 1492 ATATCTTCGTTTGAAGGGAGTGAGATCTACAACCAAGCGGATGCAGCCGGGTTTATTCGT 1551 ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| | Sbjct 1398 ATATCTTCGTTTGAAAAGAGTGAAATCTATAACCAAGCGGATGCAGCCGGGTTTATTAAT 1457 Query 1552 CT-TTACGGGCTTCCAATGAAAATTAGAGCTATGCTTAAGAAAATTAGCTAGAAATGGTT 1610 | || |||||||||||||| | | ||||| |||||| ||||| | ||||||| |||| Sbjct 1458 ATCTT-CGGGCTTCCAATGAGAGTGAGAGCAATGCTTGAGAAAGGAATCTAGAAAGGGTT 1516 Query 1611 TTCATTCATGTCT 1623 | ||||||||||| Sbjct 1517 T-CATTCATGTCT 1528 > Ahg942788 jgi|Araly1|942788|scaffold_603332.1 Length=382 Score = 259 bits (140), Expect = 5e-68 Identities = 173/189 (92%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 331 ATTCGAGCTGTTCTATCCGGTGATGGAACCGCCTTGACTACTGATTCAAAGGAGGCTGGA 390 ||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||| Sbjct 135 ATTCGAGCTGTTCTATCCGGTGATGGAACGGCCCTGGCTGCTGATTCAAAGGAGGCTGGA 194 Query 391 CTTCGTGGAAAACTGAAAAAG-GTCGTTCTAGCTT-ACAGTGGAGGCTTAGACACCTCTG 448 ||| |||||||||| ||||| ||||||||||||| ||||||||||||| || ||||||| Sbjct 195 CTTTGTGGAAAACTTAAAAAAAGTCGTTCTAGCTTTACAGTGGAGGCTTGGATACCTCTG 254 Query 449 TCATTGTGCCATGGCTTAAGGAGAACTATGGTTGTGAAGTTGTGTGCTTCACTGCTGATG 508 |||||||||||||||||||||||||||| |||||||||||||| || ||||| || |||| Sbjct 255 TCATTGTGCCATGGCTTAAGGAGAACTACGGTTGTGAAGTTGTATGTTTCACCGCCGATG 314 Query 509 TTGGTCAGG 517 ||||||||| Sbjct 315 TTGGTCAGG 323 > Ahg915144 jgi|Araly1|915144|Al_scaffold_0009_113 Length=258 Score = 259 bits (140), Expect = 5e-68 Identities = 178/196 (91%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 327 AGCTATTCGAGCTGTTCTATCCGGTGATGGAACCGCCTTGACTACTGATTCAAAGGAGGC 386 ||| ||||||||||||||||||||||||||||| ||| || || |||||||||||||||| Sbjct 48 AGCAATTCGAGCTGTTCTATCCGGTGATGGAACGGCCCTGGCTGCTGATTCAAAGGAGGC 107 Query 387 TGGACTTCGTGGAAAACTGAAAAAG-GTCGTTCTAGCTT-ACAGTGGAGGCTTAGACACC 444 ||||||| |||||||||| ||||| ||||||||||||| ||||||||||||| || ||| Sbjct 108 TGGACTTTGTGGAAAACTTAAAAAAAGTCGTTCTAGCTTTACAGTGGAGGCTTGGATACC 167 Query 445 TCTGTCATTGTGCCATGGCTTAAGGAGAACTATGGTTGTGAAGTTGTGTGCTTCACTGCT 504 |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| || Sbjct 168 TCTGTCATTGTGCCATGGCTTAAGGAGAACTACGGTTGTGAAGTTGTATGTTTCACCGCC 227 Query 505 GATGTTGGTCAG-GGC 519 |||||||||||| ||| Sbjct 228 GATGTTGGTCAGAGGC 243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68105358060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5