BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24830.1
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945614 jgi|Araly1|945614|scaffold_701843.1 2357 0.0
Ahg942788 jgi|Araly1|942788|scaffold_603332.1 259 5e-68
Ahg915144 jgi|Araly1|915144|Al_scaffold_0009_113 259 5e-68
> Ahg945614 jgi|Araly1|945614|scaffold_701843.1
Length=1528
Score = 2357 bits (1276), Expect = 0.0
Identities = 1436/1513 (95%), Gaps = 12/1513 (1%)
Strand=Plus/Plus
Query 118 ATGGCTGAAATCTCGGCGACTTCGTTT-C--CTTCTTCTTCTTCCTCTGCTCTCGTC-AT 173
||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |
Sbjct 21 ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCTTCTTCCTCTGCTCTCG-CGTT 79
Query 174 CCGTAGCTCCCACAATGGTAGCTTAAAATGTCAGAATGTAGCTGTTCCAA-AAACTACTT 232
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 80 CCGTACCTCCCACAATGGTAGCTTAAAATGTCAGAATGTAGCTGTTCCAAGAACCT-CTT 138
Query 233 CCCAGTTCCAAGAGTTATCTCTGAAACGAAGCCAGCTTGTTGGCAATGCCGTTGTTACCG 292
||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 139 CCCAGTTTCAAGAGTTATCGGTGAGACGAAGCCAGCTTGTTGGCAATGCCGTTGTTACCG 198
Query 293 GTCATGTTACCGGATCCCGCAGCTGCAAGAATCAAGCTATTCGAGCTGTTCTATCCGGTG 352
||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 199 GTCATGTTACCGGATTCCGCAGCTGCAAGAATCAAGCAATCCGAGCTGTTCTATCCGGTG 258
Query 353 ATGGAACCGCCTTGACTACTGATTCAAAGGAGGCTGGACTTCGTGGAAAACTGA-AAAAG 411
||||||| ||| || || |||||||||||||||||||||||||||||||||| | ||||
Sbjct 259 ATGGAACTGCCCTGGCTGCTGATTCAAAGGAGGCTGGACTTCGTGGAAAACTTAGAAAA- 317
Query 412 GTCGTTCTAGCTTACAGTGGAGGCTTAGACACCTCTGTCATTGTGCCATGGCTTAAGGAG 471
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 318 GTCGTTCTAGCTTACAGTGGAGGCTTGGATACCTCTGTCATTGTGCCATGGCTTAAGGAG 377
Query 472 AACTATGGTTGTGAAGTTGTGTGCTTCACTGCTGATGTTGGTCAGGGCATAAAAGAGTTA 531
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 378 AACTATGGTTGTGAAGTTGTGTGTTTCACCGCCGATGTTGGTCAGGGCATAAAAGAGTTG 437
Query 532 GAGGGTTTAGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCGTTAAGGATCTC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GAGGGTTTAGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCGTTAAGGATCTC 497
Query 592 ACAGAGGAGTTTGTGAAAGATTTCATCTTCCCTTGTCTTAGAGCTGGTGCCATCTATGAA 651
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 498 ACAGAGGAGTTTGTGAAAGATTACATATTCCCTTGTCTTAGAGCTGGTGCCATCTATGAA 557
Query 652 CGAAAATACTTGCTTGGTACCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTTGAT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CGAAAATACTTGCTTGGTACCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTTGAT 617
Query 712 GTAGCAGCAGAGGTTGGAGCTGATGCCGTTGCACATGGGTGTACTGGAAAAGGAAATGAC 771
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 618 GTAGCAGCAGAGGTTGGAGCTGATGCCGTTGCACATGGCTGTACTGGCAAAGGAAATGAC 677
Query 772 CAGGTTCGGTTTGAGCTCACCTTCTTTTCATTAAACCCTGAACTTAAAGTTGTGGCACCA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CAGGTTCGGTTTGAGCTCACCTTCTTTTCATTAAACCCTGAACTTAAAGTTGTGGCACCA 737
Query 832 TGGAGAGAATGGGAAATCCAAGGCCGAGAAGATGCTATTGAGTATGCAAAGAAGCATAAT 891
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 738 TGGAGAGAATGGGAAATCCAAGGCAGAGAAGATGCTATTGAGTATGCCAAGAAGCATAAC 797
Query 892 GTTCCCGTCCCAGTGACAAAGAAGTCCATTTACAGCCGGGACAGAAACCTGTGGCACCTT 951
||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 798 ATTCCCGTCCCAGTGACAAAAAAATCTATTTACAGCCGGGACAGGAACCTGTGGCACCTT 857
Query 952 AGTCATGAGGGTGATCTATTGGAAGATCCAGCAAACGAGCCAAAGAAAGATATGTACATG 1011
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 858 AGTCATGAGGGTGATCTATTGGAAGATCCAGCAAATGAGCCAAAGAAAGATATGTACATG 917
Query 1012 ATGAGTGTGGATCCTGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGAA 1071
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 ATGAGTGTAGATCCTGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGAA 977
Query 1072 TCTGGACTTCCAGTGGCGCTGAACGGGAAGGCTCTGAGTCCAGCCACACTTCTGGCCGAG 1131
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TCTGGAATTCCAGTGGCACTGAACGGGAAGGCTCTGAGTCCAGCCACACTTCTGGCCGAG 1037
Query 1132 CTAAACACAATAGGAGGAAAGCACGGGATTGGGCGGATTGACATGGTTGAGAACCGTCTG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 CTAAACACAATAGGAGGAAAGCACGGGATTGGGCGGATTGACATGGTTGAGAACCGTCTG 1097
Query 1192 GTTGGGATGAAATCACGAGGTGTGTATGAAACTCCTGGAGGCACTATCCTCTTTGCAGCT 1251
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1098 GTTGGGATGAAATCACGAGGTGTCTATGAAACTCCTGGAGGCACCATCCTCTTTGCAGCT 1157
Query 1252 GTACAGGAACTAGAATCCCTCACTCTAGACAGAGAGAGTATTCAGGTAAAAGACACATTA 1311
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1158 GTACAAGAACTAGAATCCCTCACTCTAGACAGAGAGAGTATTCAGGTAAAAGACTCATTA 1217
Query 1312 GCACTGAAATATGCAGAGATGGTCTACGCAGGAAGATGGTTTGATCCGCTTAGGGAGTCC 1371
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1218 GCACTGAAATACGCAGAGATGGTCTATGCGGGAAGATGGTTTGATCCGCTTAGGGAGTCC 1277
Query 1372 ATGGACGCTTTCATGGAGAAGATAACCGAGACAACCACGGGATCTGTGACACTGAAGCTG 1431
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1278 ATGGACGCTTTCATGGAGAAGATAACTGAGACAACCACGGGATCCGTGACACTAAAGCTG 1337
Query 1432 TACAAAGGATCTGTGTCGGTTACAGGGCGTCAGAGTCCTAACAGTCTGTATAGACAGGAC 1491
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1338 TACAAAGGATCTGTGTCGGTTACAGGGCGTAAGAGTCCTAACAGTCTGTATAGACAGGAC 1397
Query 1492 ATATCTTCGTTTGAAGGGAGTGAGATCTACAACCAAGCGGATGCAGCCGGGTTTATTCGT 1551
||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 1398 ATATCTTCGTTTGAAAAGAGTGAAATCTATAACCAAGCGGATGCAGCCGGGTTTATTAAT 1457
Query 1552 CT-TTACGGGCTTCCAATGAAAATTAGAGCTATGCTTAAGAAAATTAGCTAGAAATGGTT 1610
| || |||||||||||||| | | ||||| |||||| ||||| | ||||||| ||||
Sbjct 1458 ATCTT-CGGGCTTCCAATGAGAGTGAGAGCAATGCTTGAGAAAGGAATCTAGAAAGGGTT 1516
Query 1611 TTCATTCATGTCT 1623
| |||||||||||
Sbjct 1517 T-CATTCATGTCT 1528
> Ahg942788 jgi|Araly1|942788|scaffold_603332.1
Length=382
Score = 259 bits (140), Expect = 5e-68
Identities = 173/189 (92%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 331 ATTCGAGCTGTTCTATCCGGTGATGGAACCGCCTTGACTACTGATTCAAAGGAGGCTGGA 390
||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||
Sbjct 135 ATTCGAGCTGTTCTATCCGGTGATGGAACGGCCCTGGCTGCTGATTCAAAGGAGGCTGGA 194
Query 391 CTTCGTGGAAAACTGAAAAAG-GTCGTTCTAGCTT-ACAGTGGAGGCTTAGACACCTCTG 448
||| |||||||||| ||||| ||||||||||||| ||||||||||||| || |||||||
Sbjct 195 CTTTGTGGAAAACTTAAAAAAAGTCGTTCTAGCTTTACAGTGGAGGCTTGGATACCTCTG 254
Query 449 TCATTGTGCCATGGCTTAAGGAGAACTATGGTTGTGAAGTTGTGTGCTTCACTGCTGATG 508
|||||||||||||||||||||||||||| |||||||||||||| || ||||| || ||||
Sbjct 255 TCATTGTGCCATGGCTTAAGGAGAACTACGGTTGTGAAGTTGTATGTTTCACCGCCGATG 314
Query 509 TTGGTCAGG 517
|||||||||
Sbjct 315 TTGGTCAGG 323
> Ahg915144 jgi|Araly1|915144|Al_scaffold_0009_113
Length=258
Score = 259 bits (140), Expect = 5e-68
Identities = 178/196 (91%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 327 AGCTATTCGAGCTGTTCTATCCGGTGATGGAACCGCCTTGACTACTGATTCAAAGGAGGC 386
||| ||||||||||||||||||||||||||||| ||| || || ||||||||||||||||
Sbjct 48 AGCAATTCGAGCTGTTCTATCCGGTGATGGAACGGCCCTGGCTGCTGATTCAAAGGAGGC 107
Query 387 TGGACTTCGTGGAAAACTGAAAAAG-GTCGTTCTAGCTT-ACAGTGGAGGCTTAGACACC 444
||||||| |||||||||| ||||| ||||||||||||| ||||||||||||| || |||
Sbjct 108 TGGACTTTGTGGAAAACTTAAAAAAAGTCGTTCTAGCTTTACAGTGGAGGCTTGGATACC 167
Query 445 TCTGTCATTGTGCCATGGCTTAAGGAGAACTATGGTTGTGAAGTTGTGTGCTTCACTGCT 504
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 168 TCTGTCATTGTGCCATGGCTTAAGGAGAACTACGGTTGTGAAGTTGTATGTTTCACCGCC 227
Query 505 GATGTTGGTCAG-GGC 519
|||||||||||| |||
Sbjct 228 GATGTTGGTCAGAGGC 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5