BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24840.1 Length=2572 Score E Sequences producing significant alignments: (Bits) Value Ahg492352 jgi|Araly1|492352|fgenesh2_kg.7__1785__AT4G24840.1 3740 0.0 > Ahg492352 jgi|Araly1|492352|fgenesh2_kg.7__1785__AT4G24840.1 Length=2400 Score = 3740 bits (2025), Expect = 0.0 Identities = 2209/2300 (96%), Gaps = 4/2300 (0%) Strand=Plus/Plus Query 1 CAGAGGAAGCAGCGAAGCGAAAAATGTCAGATCTGGTCGCGACGTCGCCGTCGCCGTCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAGAGGAAGCAGCGAAGCGAAAAATGTCAGATCTGGTCGCGACGTCGCCGTCGCCGTCGT 60 Query 61 CAGCGCCGAGATCCGCCACAGACTTCTTCTCCGATCCTTACGACTCTCATCCTCTATGGT 120 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 61 CAGCGCCGAGATCCGCCACAGATTTCTTCTCCGATCCTTACGACTCTCATCCTCCATGGT 120 Query 121 TCAAGCCTTCCCTCTTCCTCTCCCCTAACTTCGACTCCGAGTCCTACATCTCAGAGCTCC 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAAGCCTTCCCTCTTCCTTTCCCCTAACTTCGACTCCGAGTCCTACATCTCAGAGCTCC 180 Query 181 GTACATTTGTTCCCTTTGACACTCTCCGATCTGAGCTCCGGTCACACCTTGCATCCCTCA 240 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 GTACATTCGTTCCCTTTGACACTCTCCGATCCGAGCTCCGGTCACACCTTGCATCCCTCA 240 Query 241 ACCGAGAACTTGTCGATCTCATCAATCGAGATTATGCCGATTTCGTCAATTTAAGCACTA 300 |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 ACCGCGAACTTGTTGATCTCATCAATCGAGATTATGCCGATTTCGTGAATTTAAGCACTA 300 Query 301 AGCTCGTAGATATCGATGCAGCTGTGGTTCGTATGCGTGCTCCGCTCCTTGAGCTCCGTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGCTCGTAGATATCGATGCAGCTGTGGTTCGTATGCGTGCTCCGCTCCTTGAGCTCCGTG 360 Query 361 AGAAGATCACTGGATTTCGTGGATCTGTGGAGGCAGCACTTTTTGCACTAAGGAATGGAT 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 AGAAGATCACTGGATTTCGTGGATCTGTGGAGGCAGCACTTTTTTCACTAAGGAATGGAT 420 Query 421 TGCAGCAGCGTTCTGATGCTGCTGCTGCCAGGGAGGTTCTCGAATTATTGCTCGACACAT 480 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 421 TGCAGCAGCGCTCTGATGCTGCTGCTGCCAGGGAGGTTCTCGAATTGTTGCTCGACACAT 480 Query 481 TTCATGTGGTATCCAAGGTTGAAAAACTTATTAAAGTTCTACCAAGTACTCCTTCTGATT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTCATGTGGTATCCAAGGTTGAAAAACTTATTAAAGTTCTACCAAGTACTCCTTCTGATT 540 Query 541 GGCAAAACGAGGATGCAAATTCCATGGGAAGGAGTTCTATGAATGATGAGAATTCAACGC 600 |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 541 GGCAAAACGAGGATGCGAATTCCATGGGAAGGGGTTCTATGAATTATGAGAATTCAACGC 600 Query 601 AGCAAGATGGCACAACCATGAGAGAAACCCAGAGCATGCTATTGGAAAGAATAGCTAGTG 660 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 601 AGCAAGATGGCACAACCATGAGAGAAACCCAGAGCATGCTTTTGGAAAGAATTGCTAGTG 660 Query 661 AAATGAATCGGCTCAAGTTCTATATGGCTCATGCACAGAACCTGCCTTTCATTGAGAACA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAATGAATCGGCTCAAGTTCTATATGGCTCATGCACAGAACCTGCCTTTCATTGAGAACA 720 Query 721 TGGAGAAGAGGATTCAGAGCGCTAGTGTGTTATTGGATGCTAGCCTAGGTCATTGCTTCA 780 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 721 TGGAGAAGAGGATTCAGAGCGCTAGTGTGTTATTGGATGCTAGTCTAGGGCATTGCTTCA 780 Query 781 TTGATGGGCTAAACAACAGCGATACAAGTGTCCTTTACAACTGCTTACGTGCATATGCTG 840 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 781 TTGATGGGCTAAACAACAGCGATACAAGCGTCCTTTACAACTGCTTACGTGCATACGCTG 840 Query 841 CCATTGATAACACCAACGCTGCAGAAGAAATTTTCCGTACAACGATTGTAGCTCCATTTA 900 ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| || Sbjct 841 CCATTGATAACACCAACAATGCTGAAGAAATTTTCCGTACAACGATTGTGGCTCCATATA 900 Query 901 TTCAGAAAATTATTACACATGAAACAACAACGAATGCTGCTGGAACATC-GGAAGATGAA 959 | |||||||||||||||||||||||| ||||| |||||||||||||||| || ||||||| Sbjct 901 TACAGAAAATTATTACACATGAAACATCAACGGATGCTGCTGGAACATCAGG-AGATGAA 959 Query 960 CTTGAAAACGATTACAAGCAGATCAAGCATTTTATTGCTAAGGACTGTAAAATGCTGCTA 1019 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CTTGAAAACGATTACAAACAGATCAAGCATTTTATTGCTAAGGACTGTAAAATGCTGCTA 1019 Query 1020 GAAATATCTTCAACTGACAAATCGGGTTTACATGTCTTCGACTTCTTGGCAAATTCAATC 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GAAATATCTTCAACTGACAAATCGGGTTTACATGTCTTCGACTTCTTGGCAAATTCAATC 1079 Query 1080 CTGAAAGAAGTTCTTTGGGCAATCCAGAAAGTCAAACCAGGAGCGTTTTCTCCTGGAAGG 1139 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CTGAAAGAAGTTCTTTCGGCAATCCAGAAAGTCAAACCAGGAGCGTTTTCTCCTGGAAGG 1139 Query 1140 CCTACTGAGTTCTTAAAGAATTACAAGGCAAGCTTGGATTTCCTGGCATATCTTGAAGGT 1199 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CCTACTGAGTTCTTGAAGAATTACAAGGCAAGCTTGGATTTCCTGGCATATCTTGAAGGT 1199 Query 1200 TATTGTCCGTCAAGATCTGCTGTAACTAAGTTTCGAGCTGAAGCTATATGCGTCGAATTC 1259 ||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 1200 TATTGTCTGTCAAGGTCTGATGTAACTAAGTTCCGAGCTGAAGCTATATGCGTCGAATTC 1259 Query 1260 ATGAAGCAATGGAATGTGGGAGTATATTTTTCACTGAGGTTTCAGGAGATAGCTGGAGCC 1319 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1260 ATGAAGCAATGGAATGTGGGCGTATATTTTTCACTGAGGTTTCAGGAGATAGCTGGAGCC 1319 Query 1320 TTGGATTCTGCTCTTACTTCTCCTTCTCTGGTTTTCATTCAGGATTCAGATAAA-GAGAG 1378 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| Sbjct 1320 TTGGATTCTGCTCTTACTTCTTCTTCTCTGGTTTTCATTCAGGATTCAGATAAACG-GAG 1378 Query 1379 TTCGCTCAACTTAATTCTCAGACAGAGTGATACTCTTTTGGAGTGCTTACGATCGTGCTG 1438 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1379 TTCGCTCAACTTAATTCTCAGACAGAGTGATACTCTTTTGGAGTGCTTGCGATCGTGCTG 1438 Query 1439 GAAAGAAGATGTTCTTGTTTTCTCGGCTGCTGATAAATTTCTTCGCTTGACCTTGCAGCT 1498 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 GAAAGAAGATGTTCTCGTTTTCTCGGCTGCTGATAAATTTCTTCGCTTGACCTTGCAGCT 1498 Query 1499 TCTTTCGAGATATAGCTTTTGGGTGTCATCTGCGTTGAATAATAGAAAGAGTAATGCCAG 1558 ||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||| Sbjct 1499 TCTTTCGAGATTTAGCATTTGGGTGTCATCTGCGCTGAATACTAGAAAGAGTAATGCCAG 1558 Query 1559 CCCGAGTCCTGGATGTGAATGGGCTGTTTCAGCAACTGCAGAAGACTTTGTATATGTTAT 1618 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 1559 CCCGAGTCCTGGATGTGAATGGGCAGTTTCAGCCACTGCAGAAGATTTTGTATATGTTAT 1618 Query 1619 ACATGATGTAAATTGTCTAGTCTCAGAAGTTTGCGGCGATTACCTTGGACATATATCACA 1678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 ACATGATGTAAATTGTCTAGTCTCAGAAGTTTGCGGCGATTACCTTGGACATATATCACA 1678 Query 1679 GTATTTATCTTCAAGCTCCACTGAAGTTCTTGATGTGGTGAGGATCAGCATAGAACAGGG 1738 ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1679 GTATTTATCTTCATGCTCCACTGAAGTTCTTGATGTGGTGAAGATGAGCATAGAACAGGG 1738 Query 1739 TGGGGTATCATTAGAGAAAGTCCTACCTTTACTTACCAAGACAATAATTGACGTCATTGT 1798 ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1739 TGGGGCATCACTAGAGAAAGTCCTACCTTTAGTTACCAAGACAATAATTGACGTCATTGT 1798 Query 1799 TGATAAATCTGTTGAGGACCTAAGGCAGCTCAGGGGGATAACCGCTACATTTAGGATGAC 1858 |||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||| Sbjct 1799 TGATAAATCTGTTGAGGACCTAAGGCAGCTCAAGGGAATAACTGCTACATATAGGATGAC 1858 Query 1859 TAATAAGCCACTGCCTGTTAGGCACTCACCATATGTCGTTGGGCTATTGCGTCCTGTAAA 1918 |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1859 TAATAAACCACTGCCTGTTAGGCACTCACCATACGTCGTCGGGCTATTGCGTCCTGTAAA 1918 Query 1919 GGCTTTTTTGGAGGGAGATAAGGCTAGAAACTACTTGACCCAAAAAACAAAGGAGGAGTT 1978 ||||||||||||||||||||||||||| | |||||||| || |||||| ||||| ||| Sbjct 1919 GGCTTTTTTGGAGGGAGATAAGGCTAGGCATTACTTGACACATGAAACAAGGGAGGCGTT 1978 Query 1979 ACTGCATGGCAGTGTCAGTGAAATTACCAGGCGGTATTATGAATTAGCTGCTGATGTTGT 2038 ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1979 ACTGCTTGGCACTGTCACTGAAATTACCAGGCGGTATTATGAATTAGCTGCTGAACTTGT 2038 Query 2039 TAGCGTGGCAAGAAAAACACAGTCATCGCTTCAGAAATTGCGTCAAAATGCACAGAGACG 2098 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 2039 TAGCGTGGCAAGAAAAACAGAGTCATCGCTTCAGAAATTACGTCAAAATGCACAGAGACG 2098 Query 2099 AGGAGGTGCAGCATCAGGTGTTTCTGATCAAAATGTATCTGAAACAGACAAGATGTGTAT 2158 || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 2099 AGCAGGTGCAGCATCAGGTGTATCTGACCAAAATGTATCTGAAACAGACAAGATGTGTAT 2158 Query 2159 GCAGTTGTTCCTTGATATTCAGGAGTATGGCCGAAACGTTTCTGCTTTGGGGCTGAAACC 2218 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 2159 GCAGTTGTTCCTTGATATTCAGGAGTATGGCCGAAACATTTCTGCACTGGGGCTGAAACC 2218 Query 2219 GGCGGATATTCCGGAGTACTGTTCCTTCTGGCAATGCGTTGCACCTGCGGATAGGCAAAA 2278 ||| ||||| || | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 2219 GGCAGATATCCCAGCTTATTGTTCCTTCTGGCAATGCGTTGCACCTGCGGATAGGCAAAA 2278 Query 2279 CTCAATTAGTGTTTGAGGAC 2298 | |||||||||||||||||| Sbjct 2279 CACAATTAGTGTTTGAGGAC 2298 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96977763770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5