BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24880.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492350 jgi|Araly1|492350|fgenesh2_kg.7__1783__AT4G24880.1 2187 0.0
> Ahg492350 jgi|Araly1|492350|fgenesh2_kg.7__1783__AT4G24880.1
Length=1475
Score = 2187 bits (1184), Expect = 0.0
Identities = 1387/1483 (94%), Gaps = 22/1483 (1%)
Strand=Plus/Plus
Query 6 TTTTAGGTCGAACCAGTCCTTAAGGGTCCGACCAATAGAACGTAGTTGCTCGAACTCTTC 65
||||||||||||||||||| ||| |||| ||||||||||| || ||||||||||||||||
Sbjct 1 TTTTAGGTCGAACCAGTCCATAAAGGTCGGACCAATAGAAAGTGGTTGCTCGAACTCTTC 60
Query 66 TTCCAAAAATGGCGCCTCATGAAATTCGCCGTCCTTTCAAGCGACGACCTATCTCCGATC 125
|||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 61 TTCCCAAAATGGCGCCTCATGAAATTCGCCGTCCTTTCAAACGTCGACCAATCTCCGACC 120
Query 126 AACAGAAACGCCGAGAGCTTTCTCTTATTCGTCAGACTCAGCATCGCAGTGATGCTCAGC 185
| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 121 AGCAGAAACGCCGAGAGCTTTCCCTTCTCCGTCAGACTCAGCATCGCAGTGATGCTCAGC 180
Query 186 AGCGAGCCCGAAACCTCGCCTCTTCCTTAATCTCGCTCCAATCCTCCTCTCCCGATGTCG 245
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 181 AGCGAGCCCGAAACCTCGCCTCTTCCGTAATCTCGCTCCAATCCTCCTCGCCCGATGTCG 240
Query 246 ACCCAGAGATACTATCTGAAGCCGTGCCTGAGCTTGTAGGAACCGAATCGGAATCGAGTA 305
|||| |||||| |||||||||||| | || | | | ||||||||||| |||||| ||||
Sbjct 241 ACCCGGAGATATTATCTGAAGCCGAG-CTCAAC--GAAGGAACCGAATTGGAATCTAGTA 297
Query 306 GCTTTGACGTTCGTCAAGCTTCGAGGCTCAGAGGACCTGAGGCACGCAAGTGGTTCGCAA 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTTTGACGTTCGTCAAGCTTCGAGGCTCAGAGGACCTGAGGCACGCAAGTGGTTCGCAA 357
Query 366 AGCAGCTAATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGGT 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGCAGCTAATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGGT 417
Query 426 ATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGATGGAACAACTG 485
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGTGGTAGCAAGACCAGCTGGAAAAAGATGTTTTGTAGTTTCATCTGATGGAACAACTG 477
Query 486 TTAGTAGAGTACGAAATGGGTCCACT-TTGCATCTTTTCCCTTCTGCATTACCTGGTGGT 544
||||||||||||| ||||| || | | ||||||| ||||||||||||||| |||||||||
Sbjct 478 TTAGTAGAGTACGCAATGGATCTA-TCTTGCATCATTTCCCTTCTGCATTGCCTGGTGGT 536
Query 545 GCGAGGAAAAAAGGCGCTTCTGG-CCCTGCAAACTCGTACTCTATACTAGACTGTATCTT 603
|| |||||||||||||||||||| ||| |||| ||| || ||||||||||||||||||||
Sbjct 537 GCCAGGAAAAAAGGCGCTTCTGGACCC-GCAAGCTCATATTCTATACTAGACTGTATCTT 595
Query 604 TCACGAGTCGGATCAAACATACTATGTGATTGATATGGTTTGTTGGAGAGGTTACTCGCT 663
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 596 TCACGAGTCGGATCAAACATACTATGTGATTGATATGGTTTGTTGGAGGGGTTACTCGCT 655
Query 664 TTATGAATGCACATCAGAGTTCAGGTTCTTTTGGTTGCAATCGAAACTTGCTGAGACCGG 723
||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 656 TTATGAATGTACAGCAGAGTTCAGGTTCTTTTGGATGCAATCGAAACTTGCTGAGACTGG 715
Query 724 TGCTTGTGATCCGCCTTCCGTCTACCACAAGTTCAGGTTCAGTG-TAGTTCCTTTTTACA 782
||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||| |
Sbjct 716 TGCTTGTGATCCGCCTTCCTTTTACCACAAGTTCAGGTTCAGTGCT-GTTCCTTTTTATA 774
Query 783 ACTGCGACCAAAGCGGACTTCACTCAGCTTATACAGGATCATTACCTTATGTCAGGGATG 842
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 775 ACTGCGACCAAAGCGGACTTCACTCAGCTTATACAGGATCATCACCTTATGTCAAGGATG 834
Query 843 GATTGTTATTTTATAACAAACATGCACATTATCATACTGGAAATACTCCTCTGGTGTTGA 902
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GATTGTTGTTTTATAACAAGCATGCACATTATCATACTGGAAATACTCCTCTGGTGTTGA 894
Query 903 TATGGAAGGATGAGAGCTGTAGTCAGTATGTCATCGATACTGATAACAATGGAGAAGTTC 962
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 895 TATGGAAGGATGAGAGTTGTAGTCAGTATGTCATCGATACAGATAACAATGGAGAAGTTC 954
Query 963 CAAACCAACAACATATTGTCTTGGAGTTGCAAGAAGAAGGAAAACTTGTAACATCTGATG 1022
|| | ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 955 CACATCAACAACATATAGTCTTGGAATTGCAAGAAGAAGGAAAACTTGTAACATCAGATG 1014
Query 1023 ATCCACCTGTACCATTCAGTTGCTTAAATGCAGATTTTGTAAAACAGTCAGGGCTGTCTT 1082
||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||
Sbjct 1015 ATCCACCTGTACCATTCAGTTACTTAAACGCAGATTTTGTCAAACAGTCAGGACTGTCTT 1074
Query 1083 CAGGAAGTCTTATTCGCTTTGCCATTGGCGATGGAGGGCTGAAA-TGTGTGGATGGTAGA 1141
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1075 CAGGAAGTCTTATTCGCTTTGCCATTGGCGATGGAGGGCT-AAAGTGTGTGGATGGTAGA 1133
Query 1142 TTTGAGAAGGCGGATTTGCAATATATCGGTGTATCAAATCGAGCCCGAGCCTTTGCTGAT 1201
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1134 TTTGAGAAGGCGGATTTGCAATATATCGGTGTGTCAAATCGAGCCCGAGCCTTTGCTGAT 1193
Query 1202 AGCTATTCCAAGATCATGTTTCAATATATGGCCCGACATTCTCCCCTGAAAGTAGAAGAT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGCTATTCCAAGATCATGTTTCAATATATGGCCCGACATTCTCCCCTGAAAGTAGAAGAT 1253
Query 1262 CTTGCTTCTACGATTTCACCTGAGGACCAACAGGACAAGCCCCCTGAAGTGGAGATGTCC 1321
||||| ||||||||||||| |||| |||| || |||||||||||||||||||||||||||
Sbjct 1254 CTTGCATCTACGATTTCACATGAGAACCAGCAAGACAAGCCCCCTGAAGTGGAGATGTCC 1313
Query 1322 GATTGACGAGAAGAGAGTCTAAAGTATATTGTTTGGTCACTGTGTTGTGTTCGTGGAAAC 1381
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1314 GATTGACGAGAAGAGAGTC-AAAGTATATTGTTTGGTCACTGTGTTGTGTTCGTGCAAAC 1372
Query 1382 AGAGGGAAGTAAATTTTGAAAAACGTAGCCACGtttttttGGCTTCTCA-----T----A 1432
||||||||| ||||||| ||| ||||||||| |||||||||||||||| | |
Sbjct 1373 AGAGGGAAGGAAATTTTTAAACTCGTAGCCACCTTTTTTTGGCTTCTCACACAATTGTTA 1432
Query 1433 TGATGTAAGATAGTTTGTTCTATGAAAATGAGAA-AAAATAAA 1474
||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1433 TGATGTAAGATAGTTTGTTTTATGAAAATGAGAAGAAAAAAAA 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5