BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24890.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492349 jgi|Araly1|492349|fgenesh2_kg.7__1782__AT4G24890.1 3033 0.0
Ahg331445 jgi|Araly1|331445|fgenesh1_pm.C_scaffold_8000788 1507 0.0
> Ahg492349 jgi|Araly1|492349|fgenesh2_kg.7__1782__AT4G24890.1
Length=1884
Score = 3033 bits (1642), Expect = 0.0
Identities = 1804/1884 (96%), Gaps = 3/1884 (0%)
Strand=Plus/Plus
Query 4 aaaaaTATGGCTAGAGTTTTAGGTGTGCTTCTGTGTTTACTCGCACTGTTCAGCTCGAGC 63
|||| ||||| ||||| | ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAAATTATGGGTAGAGGTATAGTTGTGCTTCTGTGTTTACTCGCACTCTTCAGCTCGAGC 60
Query 64 TTATGTTTGGATCATGCCAATGGTCGTGGAGATCAAGCACTTGCTCAAATTAATGTTTAC 123
||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 61 TTATGTTTGGATCATGCCAATGGTCGTGGAGATCAAGCACTGGCTCAGATTAATATTTAC 120
Query 124 GAAACAAGTCTTGCTTTAGATAGTTCTGTCAAACTTCACGCTTCGCCTCAAGTTCTTGGT 183
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 121 GAAACAAGTCTTGCTTTGGATACTTCTGTCAAACTTCACGCTTCCCCTCAAGTTCTTGGT 180
Query 184 TCCCAGGGTGAAGATACAGAATGGGTAAATCTTGCTATCTCCAACCCCAAGCCCACTTCA 243
|| |||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 181 TCTCAGGGTGAAGATACTGAATGGGTAGATCTTGCTATCTCCAACCCCAAGCCCTCTTCA 240
Query 244 GATGATTGGATAGGAGTTTTCTCTCCAGCAAAATTCGATTCGGGTAACTGTTGGCCAACA 303
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GACGATTGGATAGGAGTTTTCTCTCCAGCAAAATTCGACTCGGGTAACTGTTGGCCAACA 300
Query 304 AGTGGTGGCAAAGAGAAAACTCCTTACATATGCTCTTCTCCCATCAAGTACATGTATTGT 363
| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 301 ACTGGTGGCAAAGAGAAAACTCCTTACATATGTTCATCTCCCATCAAGTACATGTATTGT 360
Query 364 AATTCTCATCCAGATTACATGAAGTCCGGGAATGTGACTCTCAAGTTCCAGATTATAAAT 423
|| ||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 AACTCTCACCCAGACTATATGAAGTCCGGGAATGTGATTCTCAAGTTCCAGATTATAAAT 420
Query 424 CAGAGAGCTGATGTCTCCTTTGCACTGTTTTCCAATGGAGTTCAAGAGCCACACCTTCTC 483
|||||||||||| |||| |||||||||||||||| ||| || ||||||||||||||||||
Sbjct 421 CAGAGAGCTGATATCTCTTTTGCACTGTTTTCCAGTGGGGTCCAAGAGCCACACCTTCTC 480
Query 484 GGGGTTTCGAATCCTGTAGCTTTCTTCAATCCTAAAGCACCTGTCTATCCGCGTCTTGCA 543
|| ||||||||||||||||||||| |||||||||||||||| | || || |||||||||
Sbjct 481 GGTGTTTCGAATCCTGTAGCTTTCGTCAATCCTAAAGCACCCCTATACCCACGTCTTGCA 540
Query 544 TTAGGGAAGAATTGGGACGAAATGACCGTGACATGGACTAGTGGGTACAACATAGATGAG 603
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 TTAGGGAAGAATTGGGACGAAATGACCGTGACATGGACTAGTGGTTACAACATAGATGAG 600
Query 604 GCTGTTCCTTTCATTGAATGGAGTGCAAAGGGACTTCCAGCTAGAAGATCACCAGCTGGA 663
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTGTTCCATTCATTGAATGGAGTGCAAAGGGACTTCCAGCTAGAAGATCACCAGCTGGA 660
Query 664 ACATTGACCTTTAACAGAAACAGCATGTGTGGTAATCCTGCTCGCGGCGTTGGTTGGCGT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACATTGACCTTTAACAGAAACAGCATGTGTGGTAATCCTGCTCGCGGCGTTGGTTGGCGT 720
Query 724 GATCCTGGTTTCTTCCATACTTCTTTCTTGAAAGAACTTTGGCCAAACCGCGAATACATA 783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 GATCCTGGTTTCTTCCATACTTCTTTCTTGAAAGAACTTTGGCCAAACCGCGAATACACA 780
Query 784 TACAGGCTAGGCCATGACTTGGTCAATGGTTCCACAATTTGGAGCAAGAATTACACCTTT 843
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 TACAGGCTAGGCCATGACTTGGTCAATGGTTCGACAATTTGGAGCAAGAATTACACCTTT 840
Query 844 GTGTCCTCTCCTTATCCTGGACAAGACTCGAAACAACGGGTCATAATATTTGGTGACATG 903
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GTGTCCTCTCCTTATCCTGGACAAGACTCGAAACAACGGGTCATAATATTCGGTGACATG 900
Query 904 GGAAAGGGTGAGCGAGATGGCTCGAATGAGTACAATGATTACCAGCCTGGTTCCCTCAAC 963
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGAAAGGGTGAACGAGATGGCTCGAATGAGTACAATGATTACCAGCCTGGTTCCCTCAAC 960
Query 964 ACAACAGACCAAGTCATCAAGGACTTGAAGGACATTGACATTGTTTTCCACATTGGAGAT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACAACAGACCAAGTCATCAAGGACTTGAAGGACATTGACATTGTTTTCCACATTGGAGAT 1020
Query 1024 CTCACTTATTCCAATGGGTATCTCTCCCAGTGGGATCAGTTCACAGCTCAAGTCCAGCCC 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1021 CTCACTTATTCCAATGGGTATCTCTCCCAGTGGGATCAGTTCACAGCTCAAGTCGAGCCC 1080
Query 1084 ATTGCTTCTACTGTACCCTACATGATCGCCAGTGGCAACCATGAGCGTGATTGGCCAGAC 1143
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1081 ATTGCTTCTACTGTCCCCTACATGATAGCCAGTGGCAACCACGAGCGTGATTGGCCAGAC 1140
Query 1144 ACTGGATCTTTTTATGCCGGTACAGACTCCGGAGGAGAGTGTGGTGTTCCTGCAGAGACC 1203
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1141 ACTGGATCTTTCTATGCCGGTACAGACTCTGGAGGAGAGTGTGGTGTTCCTGCAGAGACC 1200
Query 1204 ATGTTCTACTTTCCTGCTGAGAACAGAGCTAAATTCTGGTACAAAACAGATTATGGAATG 1263
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1201 ATGTTCTACTTTCCTGCTGAGAACAGAGCTAAATTCTGGTACAGAACAGATTACGGAATG 1260
Query 1264 TTTCGCTTCTGTGTAGCAGACAGTGAACACGATTGGAGAGAAGGCACGGAGCAATACAAA 1323
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1261 TTCCGCTTTTGTGTAGCAGACAGTGAACACGATTGGAGAGAAGGAACAGAGCAATACAAA 1320
Query 1324 TTCATTGAGAATTGTCTTGCCACTGTTGATAGAAAGACTCAGCCTTGGCTCATTTTTATA 1383
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTCATCGAGAATTGCCTTGCCACTGTTGATAGAAAGACTCAGCCTTGGCTCATTTTTATA 1380
Query 1384 GCTCATCGTGTCCTTGGTTATTCCACCAATGATTGGTATGGCAAAGAAGGAACCTTTGAA 1443
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GCTCACCGTGTCCTTGGTTATTCCACCAATGATTGGTATGGCAAAGAAGGAACCTTTGAA 1440
Query 1444 GAGCCTATGGGAAGAGAAAGCCTACAAAAACTGTGGCAGAAGTACAAAGTAGACCTTGCT 1503
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1441 GAGCCTATGGGAAGAGAAAGCCTACAGAAACTGTGGCAGAAGTACAAAGTTGACCTTGCT 1500
Query 1504 TTCTACGGCCATGTCCATAACTATGAGCGAACCTGCCCCATTTACGAGAGCCAATGTGTG 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTCTACGGCCATGTCCATAACTATGAGCGAACCTGCCCCATTTACGAGAGCCAATGTGTG 1560
Query 1564 AACAATGATAAGGATCACTACTCAGGGACCTTTAAAGGAACCATCCATGTTGTTGTTGGT 1623
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1561 AACAATGATAAGGATCACTACTCAGGGACCTTCAAAGGAACCATCCACGTTGTTGTTGGT 1620
Query 1624 GGTGCAGGAAGTCACTTGTCTCCCTTTAGCTCACTTGTACCCAAATGGAGTTTGGTCAGA 1683
||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 1621 GGTGCAGGAAGTCACTTGTCTCCGTTCAGCTCACTGGTACCCAACTGGAGTTTGGTCAGA 1680
Query 1684 GACTACGACTTTGGGTTTGTGAAGTTGACTGCTTCCGATCACTCATCACTGCTCTTTGAG 1743
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1681 GATTATGACTTTGGGTTTGTGAAGTTGACTGCTTCTGATCACTCATCACTTCTCTTTGAG 1740
Query 1744 TACAAGAAGAGCAGCACTGGCCAAGTGTATGACTCCTTCAACATCTCTAGAGATTACAGA 1803
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TATAAGAAGAGCAGCACTGGCCAAGTGTATGACTCCTTCAACATCTCTAGAGATTACAGA 1800
Query 1804 GATGTTTTGGCTTGCACTCACGATAGCTGCGAGCCCACCACATCAGCTGGATGAt-tttt 1862
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 1801 GATGTTTTGGCTTGCACTCATGATAGCTGCGAGCCCACCACATCAGCTTCATGATCTTTT 1860
Query 1863 ttGT--ATTACATTGTTTTCCTTC 1884
|| | ||||||| ||||||||||
Sbjct 1861 TTTTTTATTACATAGTTTTCCTTC 1884
> Ahg331445 jgi|Araly1|331445|fgenesh1_pm.C_scaffold_8000788
Length=1848
Score = 1507 bits (816), Expect = 0.0
Identities = 1538/1880 (82%), Gaps = 76/1880 (4%)
Strand=Plus/Plus
Query 10 ATGGCTA-G-AGTTTTAG-GTGTGCTTCTGT-GTTTACTCGCACTGTTCAGC-TCGAGCT 64
||||||| | | |||| | ||||||||||| ||| | ||| || | | || || ||||
Sbjct 1 ATGGCTAGGAATTTTTTGTTTGTGCTTCTGTGGTTCA-TCGTACAGGT-GGCTTCAAGCT 58
Query 65 TATGTTTGGA-TCATGCCAATGGTCGTGGAGATCAAGCACTTG-CTCAAATTAATGTTTA 122
| || || | ||| | ||||| ||||| |||||||||| || |||||||| || ||||
Sbjct 59 TGTG-TTCAAGTCAAGAAAATGGACGTGGTGATCAAGCAC-TGTCTCAAATTGATATTTA 116
Query 123 CGA-AACAAGTCTTGCTTTAG-AT-AGTTCTGTCAAAC-TTCACGCTTCGCCTCAAGTTC 178
| | | || | ||||| | | || | |||| | | |||||||||| |||| ||||
Sbjct 117 C-ACCATAAATTTTGCTCT-GTATCA-CTCTG-CTTCCATTCACGCTTCCCCTCTTGTTC 172
Query 179 TTGGTTCCCAGGGTGAAGATACAGAATGGGTAAATCTTGCTATCTCCAACCCCAAGCCCA 238
|||||||||||||||| || ||||||||||||||| ||| ||| || || || ||||
Sbjct 173 TTGGTTCCCAGGGTGAGGACACAGAATGGGTAAATGTTGATATTTCAAATCCGGAGCCTT 232
Query 239 CTTCAGATGATTGGATAGGAGTTTTCTCTCCAGCAAAATTCGATTCGGGTAAC-TGTTG- 296
||||||| |||||| | ||||| ||||| || ||||| ||||| || | | || ||
Sbjct 233 CTTCAGACGATTGGGTTGGAGTCTTCTCACCGGCAAACTTCGACTCATCT-TCTTG-TGC 290
Query 297 GCCAACAAGTGGTGGCAAAGAGAAAACTCCTTACATATGCTCTTCTCCCATCAAGTACAT 356
||||| | | ||||||||||| | | |||| || ||||| |||| |||||||||||
Sbjct 291 TCCAAC-A--GATGGCAAAGAGATAGCACCTTTTATTTGCTCAGCTCCTATCAAGTACAT 347
Query 357 GTATTG-TAATTCTC-ATCCAGA-TTACATGAAGTCCGGGAATGTGACTCTCAAGTTCCA 413
||| || || || | | || || || |||||| ||||||||| | | | ||||| ||
Sbjct 348 GTA-TGCCAAGTC-CAACCCTGACTT-TATGAAGACCGGGAATGCGGTTTTGAAGTT-CA 403
Query 414 -GATTATAAATCAGAGAGCTGATGTCTCCTTTGCACTGTTTTC-CA-ATGGAGT-TCAAG 469
| ||||||| |||||||||||| |||||||||| | | ||| || ||| | ||||
Sbjct 404 TGCTTATAAACCAGAGAGCTGATTTCTCCTTTGC-C-CTCTTCACAGGGGGACTCTCAA- 460
Query 470 AGCCACAC-CTTCTCGGGGTTTCGAATCCTGTAGC-TTTCTTCAATCCTAAAGCACCTGT 527
| ||| || ||| ||| | |||| |||| |||| | ||| ||||||||||||| |||||
Sbjct 461 ATCCA-ACTCTTGTCGCGATTTCAAATCATGTATCATTT-GTCAATCCTAAAGCTCCTGT 518
Query 528 CTATCCGCGTCTTGCATTAGGGAAGAATTGGGACGAAATGACCGTGACATGGACTAGTGG 587
|||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || ||
Sbjct 519 TTATCCGCGTCTTGCTTTAGGGAAGAATTGGGACGAAATGAGCGTAACATGGACAAGCGG 578
Query 588 GTACAACATAGATGAGGCTGTTCC-TTTCATTGAATGGAGTGC-AAAGGG-ACTTC-CAG 643
|| | ||||| || |||||||| ||| | ||||||||| | ||||| || || ||
Sbjct 579 TTATAGCATAGGCGAAGCTGTTCCGTTT-GTGGAATGGAGT-CGGAAGGGAAC-TCAAAG 635
Query 644 CTAGAAGATCACCAGCTGGAACATTGACCTTTAACAGAAACAGCATGTGTGGTAATCCTG 703
|||||||||||||||||| || ||||| |||| ||||||||||||||||||| |||||
Sbjct 636 -TAGAAGATCACCAGCTGGTACCTTGACTTTTACCAGAAACAGCATGTGTGGTGCTCCTG 694
Query 704 CTCGCGGC-GTTGGTTGGCGTGATCCTGGTTTCTTCCATACTTCTTTCTTGAAAGAACTT 762
|||| | ||||||||||| ||||| |||||| |||| ||| ||||||||||||| |||
Sbjct 695 CTCG-TACTGTTGGTTGGCGCGATCCGGGTTTCATCCACACTGCTTTCTTGAAAGATCTT 753
Query 763 TGGCCAAACCGCGAATACATATACAGGCTAGGCCATGACTTGGTCAATGGTTCCACAATT 822
|||||||||| ||| |||| ||||||| | || ||||| ||| | ||||| || | ||||
Sbjct 754 TGGCCAAACCTCGAGTACACATACAGGATGGGTCATGAGTTGATGAATGGATCGATAATT 813
Query 823 TGGAGCAAGAATTACACCTTTGTGTCCTCTCCTTATCCTGGACAAGACTCGAAACAACGG 882
||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 814 TGGAGCAAGAATTTCACCTTCAAGTCCTCTCCTTATCCTGGACAAGACTCGTTACAACGG 873
Query 883 GTCATAATATTTGGTGACATGGGAAAGGGTGAGCGAGATGGCTCGAATGAGTACAATGAT 942
|||||||| || || |||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct 874 GTCATAATCTTCGGGGACATGGGGAAGGGAGAGCGGGATGGGTCAAACGAGTACAATGAT 933
Query 943 TACCAGCCTGGTTCCCTCAACACAACAGACCAAGTCATCAAGGACTTGAAGGACATTGAC 1002
|| |||||||||||||||||||| || |||||| ||||||||||||||||| ||||||||
Sbjct 934 TATCAGCCTGGTTCCCTCAACACCACTGACCAACTCATCAAGGACTTGAAGAACATTGAC 993
Query 1003 ATTGTTTTCCACATTGGAGATCTCACTTATTCCAATGGGTATC-TCTCCCAGTGGGATCA 1061
||||||||||||||||||||| ||||||| | ||||| || | |||| |||||||||||
Sbjct 994 ATTGTTTTCCACATTGGAGATATCACTTACGCAAATGGTTA-CATCTCACAGTGGGATCA 1052
Query 1062 GTTCACAGCTCAAGTCCAGCCCATTGCTTCTACTGTACCCTACATGATCGCCAGTGGCAA 1121
||||||||||||||| | || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1053 GTTCACAGCTCAAGTTGAACCTATTGCTTCTACTGTTCCATACATGATCGCAAGTGGAAA 1112
Query 1122 CCATGAGCGTGATTGGCCAGACACTGGATCTTTTTATGCCGGTACAGACTCCGGAGGAGA 1181
||||||||| |||||||||||| |||||||||| |||| ||||| |||||| ||||| ||
Sbjct 1113 CCATGAGCGGGATTGGCCAGACTCTGGATCTTTCTATGGCGGTAAAGACTCTGGAGGGGA 1172
Query 1182 GTGTGGTGTTCCTGCAGAGACCATGTTCT-ACTTTCCTGCTGAGAACAGAGCTAAATTCT 1240
|||||| ||||||||||| || ||||| | | |||||||||||||| | |||||| ||||
Sbjct 1173 GTGTGGGGTTCCTGCAGAAACAATGTT-TGATTTTCCTGCTGAGAATAAAGCTAAGTTCT 1231
Query 1241 GGTACAAAACAGATTATGGAATGTTTCGCTTCTGTGTAGCAGACAGTGAACACGATTGGA 1300
||||| | ||||||||||||||||| ||||||||||| |||| ||||| |||||||
Sbjct 1232 GGTACTCTGCGGATTATGGAATGTTTCGGTTCTGTGTAGCGGACACAGAACATGATTGGA 1291
Query 1301 GAGAAGGCACGGAGCAATACAAATTCATTGAGAATTGTCTTGCCACTGTTGATAGAAAGA 1360
||||||| ||||||||||| |||||| ||| |||||||||| |||| || |||||||
Sbjct 1292 GAGAAGGGTCGGAGCAATACCGATTCATAGAGCGTTGTCTTGCCTCTGTAGACAGAAAGA 1351
Query 1361 CTCAGCCTTGGCTCATTTTTA-TAGCTCATCGTGTCCTTGGTTATTCCACCAATGATTGG 1419
||||||||||| | ||||||| | |||||||||||||| ||||||||||| |||||||||
Sbjct 1352 CTCAGCCTTGGTTGATTTTTACT-GCTCATCGTGTCCTCGGTTATTCCACAAATGATTGG 1410
Query 1420 TATGGCAAAGAAGGAACCTTTGAAGAGCCTATGGGAAGAGAAAGCCTACAAAAACTGTGG 1479
|||||| ||||||| ||||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct 1411 TATGGCCAAGAAGGTTCCTTTGAAGAGCCTATGGGAAGAGAGAGCTTGCAAAAGCTGTGG 1470
Query 1480 CAGAAGTACAAAGTAGACCTTGCTTTCTACGGCCATGTCCATAACTATGAGCGAACCTGC 1539
|||||||| ||||||||| |||| ||||||||||||||||||||||| || ||||||||
Sbjct 1471 CAGAAGTATAAAGTAGACATTGCGTTCTACGGCCATGTCCATAACTACGAAAGAACCTGC 1530
Query 1540 CCCATTTACGAGAGCCAATGTGTGAACAATGATAAGGA-TCACTACTCAGGGA-CCTTTA 1597
||||||||| ||| ||||||| || |||||| || || | ||||||| ||| |||| |
Sbjct 1531 CCCATTTACCAGAACCAATGTATGGACAATG-CAAAGAGTGGCTACTCA-GGAGCCTTCA 1588
Query 1598 AAGGAACCATCCATGTTGTTGTTGGTGGTGCAGGAAGTCACTTGTCTCCCTTTAGCTCAC 1657
||||||| || || || |||||||||||||||||||||||||||||||| || |||| |
Sbjct 1589 AAGGAACTATACACGTAGTTGTTGGTGGTGCAGGAAGTCACTTGTCTCCGTTCAGCTTGC 1648
Query 1658 TTGTA-CCCAAATGGAGTTTGGTCAGAGACTACGACTTT-GGGTTTGTGAAGTTGACTGC 1715
| | | ||||| |||||| | |||||||||| || || ||||||||||||||||| ||
Sbjct 1649 T-GAAACCCAACTGGAGTATCTTCAGAGACTATGA-TTACGGGTTTGTGAAGTTGACGGC 1706
Query 1716 TTCCGATCACTCATCACTGCTCTTTGAGTACAAGAAGAGCAGCA-CTG-GCCAAGTGTAT 1773
|| ||||||||| || || ||||| || ||||| |||||||||| | | || ||| ||
Sbjct 1707 TTTCGATCACTCCTCCCTTCTCTTCGAATACAAAAAGAGCAGCAACGGAGCT--GTGCAT 1764
Query 1774 GACTCCTTCAAC-ATCTCTAGAGATTACAGAGATGTTTTGGCTTGCACTC-ACGATAGCT 1831
|||||||||| | |||| |||||| ||||||||||| ||||||| || | |||||||
Sbjct 1765 GACTCCTTCA-CTATCTTTAGAGAATACAGAGATGTCCTGGCTTGTGTTCGA-GATAGCT 1822
Query 1832 GCGAGCCCACCACATCAGCT 1851
|||| || ||||| | ||||
Sbjct 1823 GCGAACCAACCACTTTAGCT 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5