BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24900.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492348 jgi|Araly1|492348|fgenesh2_kg.7__1781__AT4G24900.1 2154 0.0
> Ahg492348 jgi|Araly1|492348|fgenesh2_kg.7__1781__AT4G24900.1
Length=1431
Score = 2154 bits (1166), Expect = 0.0
Identities = 1345/1432 (94%), Gaps = 9/1432 (1%)
Strand=Plus/Plus
Query 16 gaaagaagaagaagatgaagaaaccatcgaaaaagagcgaaaTCGAGTTCTGCACGGTGT 75
|||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 1 GAAAGACGAAGAAGATGAAGAAACCATCAAAAAAGAGCGAAACCGAGTTCTGCAAGGTGT 60
Query 76 GCCGGTTTCATCACGACCAAGGCTCGCGCCACAAGTACTTCCCTCGCCACAAAAGTTCCC 135
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGATTGCATCACGACCAAGGCTCGCGCCACAAGTACTTCCCTCGCCACAAAAGTTCCC 120
Query 136 TCTCTTCCTTACTCGATCGATTCAGATCGAAGATAGCTGACGTCAGATTCTTCCTGAAGA 195
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 121 TCTCTTCCTTACTCGATCGATTCCGATCCAAGATAGCTGACGTCAGATTCTTCCTGAAAA 180
Query 196 ACCCTAGCGTTCTACGGCCACAAGAGCAGTCGCAAAACCGTGTTTGGTGTGTCTTCTGCG 255
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 ACCCTAGCGTTCTGCGGCCACAAGAGCAGTCGCAAAACCGTGTTTGGTGTGTTTTCTGCG 240
Query 256 ATGAGGACATTGTTGAGCTCGGTAGCTCCTTCGCCTGTTCTAAGGCTATCAATCACTTCG 315
|||| || || ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 241 ATGAAGAGATCGTTGAGCTCGGTAGCTCCTTCGCCTGTTCTAAGGCAATCACTCACTTCG 300
Query 316 CAAGTTCCGATCATCTTAAGAATATCAAGCAATTTCTGTCGAAAAATGGCCCGGCAATGG 375
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 301 CAAGTTCTGATCATCTTAAGAATATCAAGCAATTTCTATTGAAAAATGGCCCGGCAATGG 360
Query 376 ATTGCATAGACGAGTTCCGAATTTCAGAAGCTGATGTAGCTAAGTGGGAGAAAAAATGTC 435
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 361 ATTGCGTAGACGAGTTCCGAATTTCAGAAGCTGATGTAGCTAAGTGGGAAAAAAAATGCC 420
Query 436 AGTCATTTGGAAATGAAGATGCATC-T-TTTGAA-GGGTCCTGTGGACAGCTGTCTGGGA 492
||||||| ||||||||||||||||| | ||| || ||||||||||||||||||| |||||
Sbjct 421 AGTCATTGGGAAATGAAGATGCATCCTCTTTTAAAGGGTCCTGTGGACAGCTGTTTGGGA 480
Query 493 CATCTAATGATATCCACACTAAACTTGCGTTTGAAACTATGGATAGAATTAAAAAAGTTC 552
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CATCTAATGATATCCACACTAAACTTGCGTTTGAAACTATGGATAGAATTGAAAAAGTTC 540
Query 553 CTGCACACCATATAAATTCATATAAATCAAATGATGTTATGCCTTTACAGTATAATACGA 612
|||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 541 CTGCACACCATATAAATTCACATAATTCAAATGTTGTTATGCCTTTACAGTATAATACGA 600
Query 613 ATGAGTATCAGATATCACTTTCAGAGATTCCTGGAGTTATACATAATGGTTCATATCTGA 672
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 601 ATGAGTATCAGATATCACTTTCAGAGATTCCTGGAGTTACACATTATGGTTCATATCTGA 660
Query 673 ACATGGATGATTCCCAATTCCCTCTATGTGATGAATCAGGGAACGGGTTTGGCGAACATT 732
|||||| || |||||| ||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 661 ACATGGGTGCTTCCCACCTCCCTCTATGTCATGAATTAGGGAACGGGTTTGGCAAACATT 720
Query 733 CCATTCCTTGTAGAAGCAAGGACT-ACTCGGGCAACGGTAATTATTGCACCCAAGAGAAT 791
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 721 CCATTCCTTGTAGAAGCAAGGA-TGACTCGGGCTACGGTAATTATTGCACCCAAGAGAAT 779
Query 792 TATCAGGTGAGCCAAGATAAGAAACAAATTGATGGCTCTTACAATCCTCCAGGTGTGGTG 851
|||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 780 TATCAGGTGAGCCAGGATAAGAAACAAATTGAGGGCAATTACAATCCTCCAGGTGTGGTG 839
Query 852 GGAATGACTAGCATTTCGTCCTCACATTCCACTGATGCTGGCGGGAACGTTCACTCTGGA 911
|| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GGCATGTCTAGCATTTCGTCCTCACATTCCACCGATGCTGGCGGGAACGTTCACTCTGGA 899
Query 912 GCTCCTCCACCTTGGCTTGATGCAAATGATGGGGATTTTTCTAGTGTTCAACTAAACCAA 971
||||||||||| ||||||||||||||||||||| || |||||| | |||||||||||||
Sbjct 900 GCTCCTCCACCATGGCTTGATGCAAATGATGGGAATGTTTCTAATATTCAACTAAACCAG 959
Query 972 TCAGATGTGGCCCGCTTTCAGGCAAAGGTACCTGGAAAGAATCGTAAGCTGAATCCTAAT 1031
||| | ||||| || ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 960 TCATACATGGCCTGCGTTCAGGCAAAGGTACCTGGGAAGAATCGTAAGCTGAACCCTAAT 1019
Query 1032 AGGGTTGGCGCTGCATGGGCTGAAAGGAGAAAGATAGAGATAGAAATGGAGAAGA---GT 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 AGGGTTGGCGCTGCATGGGCTGAAAGGAGAAAGATAGAGATAGAAATGGAGAAGAAAAGT 1079
Query 1089 GGACATGTAACGAAGAGTAACATTGATCCAGACTGGCTTCCCAACTTTGGTCGGGTTTGG 1148
||||||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 GGACATGCAACGAATAGTAATATTGATGCAGACTGGCTTCCCAACTTTGGTCGGGTTTGG 1139
Query 1149 CAATCAGGCACTAGAAAAGAATCCAGGAAAGAATTTGAGAAGGAAAAACGGAAGTTAGTG 1208
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 CAATCAGGCACTCGAAAAGAATCCAGAAAAGAATTTGAGAAGGAAAAACGGAAGTTAGTA 1199
Query 1209 AAAACTGAAAGCATCTCTACAGAATCAGAACCAGTCAAAATACAACCGTACATTAGCAAA 1268
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAAACTGAAAGTGTCTCGACAGAATCAGAACCAGTCAAAATACAACCGTACATTAGCAAA 1259
Query 1269 CGGGCGCGAAGAGAGAGTGGTGAGTAATGGCGGTGGCTGACATCCAAAATGGCAACTAGT 1328
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1260 CGGGTGCGAAGAGAGAGTGGTGAGTAATGGCTGTGGCTGGCATCCAAAATGGCAACTAGT 1319
Query 1329 AAGGATTATCTCATGTAGGAATTTTATAATCCTCGTTTCCTGGAGATCCTACTCCAATGT 1388
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||
Sbjct 1320 AAGGATTATCTCATGTAGGAATTTTAGAATCCTCGTTTATTGGAGATCCTGCTCCAGTGT 1379
Query 1389 ATCTTGTTTT-CATGTTGAGCTATGATAGAATTTAGAAGTATGTGATCCTGG 1439
|||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 ATCTTGTTTTTCATGTTGAGCTATGATAGAATTTAGAGGTATGTGATCCTGG 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5