BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24910.1 Length=948 Score E Sequences producing significant alignments: (Bits) Value Ahg945608 jgi|Araly1|945608|scaffold_701837.1 1328 0.0 > Ahg945608 jgi|Araly1|945608|scaffold_701837.1 Length=991 Score = 1328 bits (719), Expect = 0.0 Identities = 878/954 (92%), Gaps = 14/954 (1%) Strand=Plus/Plus Query 1 ATGCCTCCGCAATTTCATCAATCTTCCCTTTCTATTCTCAATCCTCTACTCAGGTTCTCA 60 |||||||| ||| | ||||||||||| ||| ||||||||||||||||||| || |||||| Sbjct 21 ATGCCTCCCCAACTCCATCAATCTTCACTTCCTATTCTCAATCCTCTACTTAGATTCTCA 80 Query 61 CCTCCTTCCTCCCCTGATAATCCCAAACACCAGAGGTTATCAACGATTAAGATGCCTAAA 120 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 81 CCTCCTTCCTCCCCTGATAATCCCAAAAACCAGAGGGTATCAACGATTAAGATGCCTAAA 140 Query 121 TTCACTGTACGTAAGCTCATACCTCTTCTTATTTTCGTTCTATCAAGCCTCTCTGTTCTC 180 ||||||||| |||||||||||||||||||||| |||||||| ||||| ||||| |||||| Sbjct 141 TTCACTGTATGTAAGCTCATACCTCTTCTTATCTTCGTTCTTTCAAGTCTCTCCGTTCTC 200 Query 181 CGACTCCTCCGGATTTCATACAAGTC-T--TCTTCTAAGTCCCAGTCCTCATCTTCAACC 237 |||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||| Sbjct 201 CGACTCCTCCGGATTTCATACAAGTCTTCATCTTCTACGTCTCAGTCCTCATCTTCAACC 260 Query 238 ACATTTCGCTTGAGTCCAGCTGATTCCAGTCAGCAGCTCAGGGCTAATGAGGGCCCA-AC 296 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 261 ACATTTCATTTGAGTCCAGCTGAGTCCAGTCAGCAGCTCAGGGCTAATGAGGGCCCATA- 319 Query 297 CGCTCTCATGGAAAAGGAACTGAAGCTCTTATCAGATACCGTTACTCGTAGATCCCCATG 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 320 CGCTCTCATGGAAAAGGAACTGAAGCTCTTATCAGATACCGTTACTCGTAGATCCCCTTG 379 Query 357 CAACATTCTTGTTTTCGGGTTTGCACCTCAATACCTCATGTTATCTTCAATCAACACTAG 416 |||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 380 CAACGTTCTTGTTTTCGGGTTTGCACCTCAATACCTCATGTTACCTGCGATCAACACTAG 439 Query 417 AGGTATTACCGTCATTCTGGAAGATGAACCTGCAAAGATAATGATACCAAAAGCTGAAGT 476 |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| Sbjct 440 AGGTATTACCGTCATTCTAGAAGATGTACCTGAAAAGATAATGATACCAAAAGCTGAAGT 499 Query 477 AAATCCAAACAACACAAGAATCTACAGCTT-AAAGTACCATCAGATGGAAGT-AAGAAAT 534 |||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || |||| Sbjct 500 AAATCCAAACAACACAAGAATCTATAGCTTTAAA-TACCATCAGATGGAAGTGAA-AAAT 557 Query 535 GCTTACAATCTGCTTCAACATGCTCGAGCTAATCCCGCATGTGCACCAAATATGAATAAT 594 |||||||| ||||||| |||||| ||||| ||| ||||||| |||||||| ||||||||| Sbjct 558 GCTTACAAACTGCTTCGACATGCACGAGCCAATTCCGCATGCGCACCAAAGATGAATAAT 617 Query 595 CAACATCAAGGCTCATCAGACTGCAAACTGGAACTGAGGGATTTGCCACAGCAGGTACAC 654 | ||| | |||||||||| ||||||| || ||||| |||||||||||||| | |||||| Sbjct 618 CTACA--A-GGCTCATCAGCCTGCAAAATGCAACTGCGGGATTTGCCACAGGAAGTACAC 674 Query 655 AATACCAAATGGGATGTGATAGTTGTTGATGGCCCCCGTGGAGATGACTTAGAGACACCA 714 ||||||||||||||||||||||| |||||||| || ||||| || |||| ||| ||||| Sbjct 675 AATACCAAATGGGATGTGATAGTAGTTGATGGTCCACGTGGGGACAACTTCGAGGCACCA 734 Query 715 GGTAGGATGGGGAGTATATATACTGCAGCTGTGTTAGCAAGAAAAGGAAGTAGCAACTCA 774 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 735 GGTAGGATGGGGAGTATATATACTGCAGCTGTGTTAGCAAGAAAGGGAAGTAGCAACTCT 794 Query 775 ACAACAGATGTTTTCGTGCATGATGTGCACAGGACAGCTGAAAAGTGGCTCTCCTGGGAG 834 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 795 ACAACAGATGTTTTCGTGCATGATGTGCACAGGACGGCTGAGAAGTGGCTCTCCTGGGAA 854 Query 835 TTCTTGTGCCAGGAGAATCTGGTTTCAGCTAAAGG-AACCTTCTGGAAGTTTAGGATCAA 893 ||||| || |||||||||||||||||||||||||| ||| |||||||| |||||||| || Sbjct 855 TTCTTATGTCAGGAGAATCTGGTTTCAGCTAAAGGGAAC-TTCTGGAAATTTAGGATAAA 913 Query 894 GCGTCAATCAAATGCATCCAGGTTTTGCTCACCAGAAACAGTCATCATCAGATA 947 | | ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 914 GGGACAATCAAATGCATCCAGGTTTTGCTCACCAGAAACAGTCCTCATCAGATA 967 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35187452391 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5