BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24910.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945608 jgi|Araly1|945608|scaffold_701837.1 1328 0.0
> Ahg945608 jgi|Araly1|945608|scaffold_701837.1
Length=991
Score = 1328 bits (719), Expect = 0.0
Identities = 878/954 (92%), Gaps = 14/954 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCCGCAATTTCATCAATCTTCCCTTTCTATTCTCAATCCTCTACTCAGGTTCTCA 60
|||||||| ||| | ||||||||||| ||| ||||||||||||||||||| || ||||||
Sbjct 21 ATGCCTCCCCAACTCCATCAATCTTCACTTCCTATTCTCAATCCTCTACTTAGATTCTCA 80
Query 61 CCTCCTTCCTCCCCTGATAATCCCAAACACCAGAGGTTATCAACGATTAAGATGCCTAAA 120
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 81 CCTCCTTCCTCCCCTGATAATCCCAAAAACCAGAGGGTATCAACGATTAAGATGCCTAAA 140
Query 121 TTCACTGTACGTAAGCTCATACCTCTTCTTATTTTCGTTCTATCAAGCCTCTCTGTTCTC 180
||||||||| |||||||||||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 141 TTCACTGTATGTAAGCTCATACCTCTTCTTATCTTCGTTCTTTCAAGTCTCTCCGTTCTC 200
Query 181 CGACTCCTCCGGATTTCATACAAGTC-T--TCTTCTAAGTCCCAGTCCTCATCTTCAACC 237
|||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||
Sbjct 201 CGACTCCTCCGGATTTCATACAAGTCTTCATCTTCTACGTCTCAGTCCTCATCTTCAACC 260
Query 238 ACATTTCGCTTGAGTCCAGCTGATTCCAGTCAGCAGCTCAGGGCTAATGAGGGCCCA-AC 296
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 261 ACATTTCATTTGAGTCCAGCTGAGTCCAGTCAGCAGCTCAGGGCTAATGAGGGCCCATA- 319
Query 297 CGCTCTCATGGAAAAGGAACTGAAGCTCTTATCAGATACCGTTACTCGTAGATCCCCATG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 320 CGCTCTCATGGAAAAGGAACTGAAGCTCTTATCAGATACCGTTACTCGTAGATCCCCTTG 379
Query 357 CAACATTCTTGTTTTCGGGTTTGCACCTCAATACCTCATGTTATCTTCAATCAACACTAG 416
|||| |||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 380 CAACGTTCTTGTTTTCGGGTTTGCACCTCAATACCTCATGTTACCTGCGATCAACACTAG 439
Query 417 AGGTATTACCGTCATTCTGGAAGATGAACCTGCAAAGATAATGATACCAAAAGCTGAAGT 476
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 440 AGGTATTACCGTCATTCTAGAAGATGTACCTGAAAAGATAATGATACCAAAAGCTGAAGT 499
Query 477 AAATCCAAACAACACAAGAATCTACAGCTT-AAAGTACCATCAGATGGAAGT-AAGAAAT 534
|||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || ||||
Sbjct 500 AAATCCAAACAACACAAGAATCTATAGCTTTAAA-TACCATCAGATGGAAGTGAA-AAAT 557
Query 535 GCTTACAATCTGCTTCAACATGCTCGAGCTAATCCCGCATGTGCACCAAATATGAATAAT 594
|||||||| ||||||| |||||| ||||| ||| ||||||| |||||||| |||||||||
Sbjct 558 GCTTACAAACTGCTTCGACATGCACGAGCCAATTCCGCATGCGCACCAAAGATGAATAAT 617
Query 595 CAACATCAAGGCTCATCAGACTGCAAACTGGAACTGAGGGATTTGCCACAGCAGGTACAC 654
| ||| | |||||||||| ||||||| || ||||| |||||||||||||| | ||||||
Sbjct 618 CTACA--A-GGCTCATCAGCCTGCAAAATGCAACTGCGGGATTTGCCACAGGAAGTACAC 674
Query 655 AATACCAAATGGGATGTGATAGTTGTTGATGGCCCCCGTGGAGATGACTTAGAGACACCA 714
||||||||||||||||||||||| |||||||| || ||||| || |||| ||| |||||
Sbjct 675 AATACCAAATGGGATGTGATAGTAGTTGATGGTCCACGTGGGGACAACTTCGAGGCACCA 734
Query 715 GGTAGGATGGGGAGTATATATACTGCAGCTGTGTTAGCAAGAAAAGGAAGTAGCAACTCA 774
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 735 GGTAGGATGGGGAGTATATATACTGCAGCTGTGTTAGCAAGAAAGGGAAGTAGCAACTCT 794
Query 775 ACAACAGATGTTTTCGTGCATGATGTGCACAGGACAGCTGAAAAGTGGCTCTCCTGGGAG 834
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 795 ACAACAGATGTTTTCGTGCATGATGTGCACAGGACGGCTGAGAAGTGGCTCTCCTGGGAA 854
Query 835 TTCTTGTGCCAGGAGAATCTGGTTTCAGCTAAAGG-AACCTTCTGGAAGTTTAGGATCAA 893
||||| || |||||||||||||||||||||||||| ||| |||||||| |||||||| ||
Sbjct 855 TTCTTATGTCAGGAGAATCTGGTTTCAGCTAAAGGGAAC-TTCTGGAAATTTAGGATAAA 913
Query 894 GCGTCAATCAAATGCATCCAGGTTTTGCTCACCAGAAACAGTCATCATCAGATA 947
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 914 GGGACAATCAAATGCATCCAGGTTTTGCTCACCAGAAACAGTCCTCATCAGATA 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5