BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24920.1
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492346 jgi|Araly1|492346|fgenesh2_kg.7__1779__AT4G24920.1 728 0.0
Ahg495113 jgi|Araly1|495113|fgenesh2_kg.8__929__AT5G50460.1 287 6e-77
> Ahg492346 jgi|Araly1|492346|fgenesh2_kg.7__1779__AT4G24920.1
Length=464
Score = 728 bits (394), Expect = 0.0
Identities = 443/466 (95%), Gaps = 6/466 (1%)
Strand=Plus/Plus
Query 49 aaaaaaaaaaaaaaaGAAGGGACATGGACGCCATTGATTCCGTCGTGGATCCTCTTAGAG 108
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAAAAAAAAAAAAA-AAGCGACATGGACGCCATTGATTCCGTCGTGGATCCGCTTAGAG 59
Query 109 ACTTTGCCAAGGACAGCATTCGCCTCGTTAAGCGTTGTCATAAGCCAGATCGCAAAGAAT 168
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 ACTTTGCCAAGGACAGCATTCGCCTCGTTAAGCGTTGTCACAAGCCAGATCGCAAAGAAT 119
Query 169 TCACGAAAGTTGCAGTCCGTACAGCAATCGGGTTCGTAGTAATGGGATTCGTGGGATTCT 228
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 TCACGAAAGTGGCAGTGCGTACAGCAATCGGGTTCGTAGTAATGGGATTCGTGGGCTTCT 179
Query 229 TTGTGAAGCTCATCTTTATTCCAATCAACAACATCATCGTCGGTGCTACTTAGATAACAA 288
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTGTGAAGCTCATCTTTATTCCCATCAACAACATCATCGTCGGTGCTACTTAGATAACTA 239
Query 289 AGGGAAGAT-AAAAGATGGAGAAGGGTAGTTACAGCTTTGTTGTTTTCATGAAGACACTT 347
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 AGGGAAGATAAAAAGATGGAGAAGGGTAGTTACAGCTTTGTTG-TTTCATGAAGACACTT 298
Query 348 CACAG--ttttt-ttcttttttCTTGTTCAGATACTCAAAAAGAGGAAACATTTTGTGAA 404
||||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 CACAGTTTTTTTGTTTTTTTTTTTTGTTCAGATACTCAAAAAGAGGAAACATTTTGTGAA 358
Query 405 CCTAGTTTAACCACACATTTGGGATCAATCTCTAGTAATTTTCTTTCTGTTTAATGTATG 464
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 359 CCTAGTTTAACCACACATTTGAGATCAATCTCTAGTAATTTGCTTTCTGTTTAATGTATG 418
Query 465 TCACTGTTTATTTCACTGTTCCGTTAGAAATTTGAAAGTTTTGGTG 510
|||||||||||| | ||||||||| ||||| ||||||| |||||||
Sbjct 419 TCACTGTTTATTACGCTGTTCCGTAAGAAAATTGAAAGCTTTGGTG 464
> Ahg495113 jgi|Araly1|495113|fgenesh2_kg.8__929__AT5G50460.1
Length=461
Score = 287 bits (155), Expect = 6e-77
Identities = 201/223 (90%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 71 CATGGACGCCATTGATTCCGTCGTGGATCCTCTTAGAGACTTTGCCAAGGACAGCATTCG 130
|||||||||||||||||||||||| || ||||| |||||||| || ||||| || |||||
Sbjct 41 CATGGACGCCATTGATTCCGTCGTTGACCCTCTCAGAGACTTCGCTAAGGATAGTATTCG 100
Query 131 CCTCGTTAAGCGTTGTCATAAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTCCGTAC 190
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 101 CCTCGTTAAGCGTTGCCACAAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTAC 160
Query 191 AGCAATCGGGTTCGTAGTAATGGGATTCGT-GGGATTCTTTGTGAAGCTCATCTTTATTC 249
|| || ||||| || |||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 161 CGCGATTGGGTTTGTGGTAATGGGATTCGTTGGG-TTCTTTGTGAAGCTAATCTTTATTC 219
Query 250 CAATCAACAACATCATCGTCGGTGCTACTTAGATAA-CAAAGG 291
| ||||||||||||||||||||||| ||||||| || ||||||
Sbjct 220 CGATCAACAACATCATCGTCGGTGCCACTTAGA-AAGCAAAGG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18543616254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5