BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24930.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945606 jgi|Araly1|945606|scaffold_701835.1 1066 0.0
Ahg898845 jgi|Araly1|898845|Al_scaffold_0005_2811 385 4e-106
Ahg913716 jgi|Araly1|913716|Al_scaffold_0001_3970 255 4e-67
Ahg895403 jgi|Araly1|895403|Al_scaffold_0006_3399 255 4e-67
Ahg492344 jgi|Araly1|492344|fgenesh2_kg.7__1777__AT4G24940.1 100 2e-20
> Ahg945606 jgi|Araly1|945606|scaffold_701835.1
Length=721
Score = 1066 bits (577), Expect = 0.0
Identities = 661/702 (94%), Gaps = 4/702 (1%)
Strand=Plus/Plus
Query 123 GTAA-CCATAAACTACAAACATGAGTTTGGTCGCCAGTTTGCAACTCATCCTCCCGCCAC 181
|||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1 GTAACCCATAAACTAGAAACATGAGTTTGGTCGGCAGTTTACAACTCATCCTCCCGCCAC 60
Query 182 GGCCGAGAAGCACCAAGTTGTTGTGCTCATTGCAAAGCCCAAAACAAGAACAAG-A-A-C 238
||||||||||||||||||| ||||||||| || ||||||||| ||||| ||||| | | |
Sbjct 61 GGCCGAGAAGCACCAAGTTCTTGTGCTCAATGAAAAGCCCAACACAAGGACAAGAAGACC 120
Query 239 TCTCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTA 298
|||||||| |||||||| |||||||||| || |||||||||||||| ||||||||||||
Sbjct 121 TCTCTTCTTCTTCTCCTTCAATCTCTCTCTTGCCAAAACTAATCTCGTTTGCTCTTGCTC 180
Query 299 TCTCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCAC 358
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCAC 240
Query 359 TCACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTA 418
|||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 241 TCACTACTCCTTTCACCCAATCCAAGTTTGTGCAGACTGGTCTTCTCAATGGCAAAATTA 300
Query 419 GGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCT 478
| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 301 GACCTTGCCCTTCCACGAACCCAGGCTGTGTATCCACGAATCCGACCTCATCTTCCTTCT 360
Query 479 CTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATTGAGAAACTGAAAGAAG 538
| ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 361 CATTTCCATTGACGATCCCAGAAACTGATACACAAGATCCCATTCAGAAACTGAAAGAAG 420
Query 539 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCCTATGGGA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 421 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCATACGGGA 480
Query 599 GGTATGTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 658
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATATTTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 540
Query 659 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 600
Query 719 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGTTGAAGAAGCTCATCGATC 778
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 601 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGATGAAGAAGCTCATCGACC 660
Query 779 AGCTTGGTTGGTATGCTCCTACCTTTGAATCTATGGAATAAA 820
||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 661 AGCTTGGTTGGTATGCTCCTACCTTTGAATCCATGGAGTAAA 702
> Ahg898845 jgi|Araly1|898845|Al_scaffold_0005_2811
Length=366
Score = 385 bits (208), Expect = 4e-106
Identities = 260/285 (91%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 241 TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC 300
|||||| |||||||| |||||||||| ||||||||||||||||| |||||| ||||| |
Sbjct 79 TCTTCTTCTTCTCCTTCAATCTCTCTCTTACCAAAACTAATCTCGTTTGCTATTGCTCTA 138
Query 301 TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC 360
||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 139 TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC 198
Query 361 ACCACTCCTTTCA---CCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATT 417
||||||||||||| ||||||||||||| || |||| |||||||||||||||||||||
Sbjct 199 ACCACTCCTTTCAGTACCCAATCCAAGTTTGTGCAGATTGGTCTTCTCAATGGCAAAATT 258
Query 418 AGGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTC 477
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 259 AGACCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTC 318
Query 478 TCTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT 522
|| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 319 TCATTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT 363
> Ahg913716 jgi|Araly1|913716|Al_scaffold_0001_3970
Length=339
Score = 255 bits (138), Expect = 4e-67
Identities = 238/282 (84%), Gaps = 24/282 (9%)
Strand=Plus/Plus
Query 241 TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC 300
|||||| |||||||| |||||||||| ||||||||||||||||| |||||| |||| |
Sbjct 79 TCTTCTTCTTCTCCTTCAATCTCTCTCTTACCAAAACTAATCTCGTTTGCTAGTGCTCTA 138
Query 301 TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC 360
||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 139 TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC 198
Query 361 ACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTAGG 420
||||||||||||| | | | ||| | || | || |||||||||
Sbjct 199 ACCACTCCTTTCAG----T--A----C--CCA-A----TC--C--AA---CAAAATTAGA 234
Query 421 CCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCTCT 480
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 235 CCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTCTCA 294
Query 481 TTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT 522
|||||||||||||||| ||||||||| ||||||||||||||
Sbjct 295 TTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT 336
> Ahg895403 jgi|Araly1|895403|Al_scaffold_0006_3399
Length=339
Score = 255 bits (138), Expect = 4e-67
Identities = 238/282 (84%), Gaps = 24/282 (9%)
Strand=Plus/Plus
Query 241 TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC 300
|||||| |||||||| |||||||||| ||||||||||||||||| |||||| |||| |
Sbjct 79 TCTTCTTCTTCTCCTTCAATCTCTCTCTTACCAAAACTAATCTCGTTTGCTAGTGCTCTA 138
Query 301 TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC 360
||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 139 TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC 198
Query 361 ACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTAGG 420
||||||||||||| | | | ||| | || | || |||||||||
Sbjct 199 ACCACTCCTTTCAG----T--A----C--CCA-A----TC--C--AA---CAAAATTAGA 234
Query 421 CCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCTCT 480
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 235 CCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTCTCA 294
Query 481 TTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT 522
|||||||||||||||| ||||||||| ||||||||||||||
Sbjct 295 TTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT 336
> Ahg492344 jgi|Araly1|492344|fgenesh2_kg.7__1777__AT4G24940.1
Length=1277
Score = 100 bits (54), Expect = 2e-20
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 10 CTTCTCTGAGCATTAGCGCCCCAAACCCTAATCTGGCGGTCGTACAAGGCAGTCTCCTGC 69
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 192 CTTCTTTGAGCATTAGCGCCCCAAACCCTAATCTGACGGTCGTACAAAGCAGTCTCCTGC 133
Query 70 TCG-TAA 75
||| |||
Sbjct 132 TCGGTAA 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5