BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24940.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492344 jgi|Araly1|492344|fgenesh2_kg.7__1777__AT4G24940.1 1912 0.0
Ahg495124 jgi|Araly1|495124|fgenesh2_kg.8__940__AT5G50580.2 857 0.0
> Ahg492344 jgi|Araly1|492344|fgenesh2_kg.7__1777__AT4G24940.1
Length=1277
Score = 1912 bits (1035), Expect = 0.0
Identities = 1167/1231 (95%), Gaps = 8/1231 (1%)
Strand=Plus/Plus
Query 99 CGCAAATTCTAGTTTCTTAGAGCAAAGCTTTGTTGAATTGATAGCTTGAATTTGGGAATG 158
||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||
Sbjct 53 CGCAAATTCTAGTTTCTGAAAGCAAAGCTTTGTTGAATTGATAGCTTAAATTTGCGAATG 112
Query 159 GACGGAGAAGAGCTTACCGAGCAGGAGACTGCCTTGTACGACCGCCAGATTAGGGTTTGG 218
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 113 GACGGAGAAGAGCTTACCGAGCAGGAGACTGCTTTGTACGACCGTCAGATTAGGGTTTGG 172
Query 219 GGCGCTAATGCTCAGAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATTAAGGGG 278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GGCGCTAATGCTCAAAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATTAAGGGG 232
Query 279 ACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACTTTAATG 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 233 ACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACTTTGATG 292
Query 339 GATGATCGTTTAGCAAAC-ATGGAGGCCTTGAACGCTAACTTTTTGATTCCGCCTGATGA 397
||||||||||||| || | ||||||||||||||| ||||||||||||| |||||||||
Sbjct 293 GATGATCGTTTAGTGAATGA-GGAGGCCTTGAACGCAAACTTTTTGATTCTGCCTGATGA 351
Query 398 AAATGTTTACAGTGGCAAAACTGTGGCTGAGATTTGTAGTGATTCACTCAAGGATTTCAA 457
||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 352 AAACGCTTACAGTGGCAAAACTGTGGCTGAGATTTGTTGTGAGTCACTCAAGGATTTCAA 411
Query 458 CCCTATGGTCCGTGTTTCCGTAGAGAAAGGTGATTTGTCAATGCTTGGCACTGAtttttt 517
||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||
Sbjct 412 TCCTATGGTCCGTGTTTCTGTAGAGAAAGGTGATCTGTCAACGCTTGGCACTGATTTTTT 471
Query 518 tGAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAAAATATGTCAA 577
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 TGAGCAGTTTGATGTCGTAGTTATAGGCTACGGTTCTCGTGCTACCAAAAAATATGTCAA 531
Query 578 TGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATACAGTCGATTGTAGAGACTC 637
||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 532 TGAAAAATGTCAGAAGTTAGTGAAACGTGTGGCATTCTATACAGTCGATTGTAGAGACTC 591
Query 638 ATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGAAAAAGCTTGAAGA 697
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 592 ATGTGGTGAAATCTTTGTGGACCTTCAAGATTACAAGTACATGAAGAAAAAGCTTGAAGA 651
Query 698 GATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAGGAAGCTATATCGGTACCATGGAA 757
|| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 652 GACGGTGGAATGCGAACTAAATTTCCCAAGTTTTCAGGAAGCTATATCAGTACCATGGAA 711
Query 758 ACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGTAATAGAAGTGTTTGA 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGTAATAGAAGTGTTTGA 771
Query 818 AGAGAGTGAAGGGCGTAAACATGGAGAATGTTCGCTACTCGATCTTGCCAGAGTCTTGGA 877
|| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 772 GGAAAGTGAAGGGCGCAAACATGGAGAATGTTCGTTACTCGATCTTGCCAAAGTCTTGGA 831
Query 878 AATCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAGCCATATACCAGATATTCT 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 832 AATCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAGCCATATACCAGATAGTCT 891
Query 938 CTTGGAGAGACTTATCACTGGTACTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGG 997
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 892 CTTAGAGAGACTTATCACTGGTACTACTGAATTCCCACCAGCTTGTGCCATTGTGGGAGG 951
Query 998 AATATTAGCACAGGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTT 1057
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 952 AATATTAGCACAGGAGGTGATCAAAGCAGTATCAGGCAAAGGAGATCCATTGAAAAACTT 1011
Query 1058 CTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCGACTCTTTTAC 1117
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1012 CTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCAACTCTTTTAC 1071
Query 1118 CTCTTAAACAACCAGTGGG-CCTTGATTTAGTTTAAACTCTATAATCTCTGAGATTCCAT 1176
||||||| ||||||||| | ||| |||||| ||||| |||||| ||||||||||||| ||
Sbjct 1072 CTCTTAACCAACCAGTGTGTCCTAGATTTAATTTAA-CTCTATGATCTCTGAGATTCTAT 1130
Query 1177 GTATATCTCAATCGTTTGTTTTTTGCCTTCACATTATGAACAAATTTAATGCAGAATTTA 1236
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1131 GTATATCTCAATCGTTTGTTTTTTGCCTTCACATTATAAACAAATT-AATGCAGAATTTC 1189
Query 1237 GTGGAGGATCAGTTGTGATTTTCCTTCGGTAAAATCATTTTCAGTTATTGACATTTGAAT 1296
|||| || |||||| ||||||||||| |||| ||||| ||||||||||||||||| ||||
Sbjct 1190 GTGGTGG-TCAGTTATGATTTTCCTT-GGTAGAATCAATTTCAGTTATTGACATT-GAAT 1246
Query 1297 TGTTCAATTTCAAATTTCAAATATTATAATT 1327
|||||||||||||||||||||||||||||||
Sbjct 1247 TGTTCAATTTCAAATTTCAAATATTATAATT 1277
Score = 78.7 bits (42), Expect = 1e-13
Identities = 51/55 (93%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 11 TGAGAGAGTTGACCAAAATCGACCCAGTGGGAGGACTAGGTTTATCGAAAGCTCC 65
||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1 TGAGAGAGTTGACCAAAATCGACCCAGTGC-AG-ACTAGGTTTATCCAAAGCTCC 53
> Ahg495124 jgi|Araly1|495124|fgenesh2_kg.8__940__AT5G50580.2
Length=1173
Score = 857 bits (464), Expect = 0.0
Identities = 805/966 (83%), Gaps = 38/966 (4%)
Strand=Plus/Plus
Query 154 GAATGGACGGAGAAGAGCTTACCGAGCAGGAGACTGCCT-TGTACGACCGCCAGATTAGG 212
||||||||||||||||||| |||||||| || |||| || | ||||||||||| ||||||
Sbjct 51 GAATGGACGGAGAAGAGCTCACCGAGCAAGAAACTG-CTCTATACGACCGCCAAATTAGG 109
Query 213 GTTTGGGGCGCTAATGCTCAGAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATT 272
|||||||||||| |||||| |||||||||| ||| ||||| | |||||||||||||||
Sbjct 110 GTTTGGGGCGCTGGTGCTCAAAGAAGATTGAGTAAATCTCATGTTTTGGTATCTGGAATT 169
Query 273 AAGGGGACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACT 332
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 170 AAGGGGACTGTTGCTGAGTTTTGCAAGAACATTGTGTTGGCTGGAGTTGGTAGTGTGACT 229
Query 333 TTAATGGATGATCGTTTAGC-A-AACATGGAGGCCTTGAACGCTAACTTTTTGATTCCGC 390
|| |||||||||| || | | ||| ||| || || ||||| ||||| ||||||| |
Sbjct 230 CTATTGGATGATCGGTTGGTTACAAC--GGAAGCATTCAACGCAAACTTCTTGATTCTTC 287
Query 391 CTGATGAAAATGTTTACAGT-GGCAAAACTGTGGCTGAGATTTGTAGTGATTCACTCAAG 449
|||||||||||| ||| || |||||||| || |||||||||||| |||||||||| |||
Sbjct 288 CTGATGAAAATGCTTAT-GTAGGCAAAACCGTAGCTGAGATTTGTTGTGATTCACTTAAG 346
Query 450 GA-TTTCAACCCTATGGTCCGTGTTTCCGTAGAGAA-AGGTGATTTGTCAATGCTTGGCA 507
|| ||| ||||||||||||| |||||| |||| || |||||||||||||| |||||
Sbjct 347 GAATTT-AACCCTATGGTCCATGTTTCAATAGA-AACAGGTGATTTGTCAACATTTGGCG 404
Query 508 CTGAtttttttGAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAA 567
||||||||| ||| |||||||||| || ||||| ||||| ||||||||||||| || |
Sbjct 405 TTGATTTTTTCGAGAAGTTTGATGTTGTGGTTATCGGCTACAGTTCTCGTGCTACTAAGA 464
Query 568 AAT-ATGTCAATGAAAAATGTCGGAAGTTAA-AGAAACGTGTCGCATTCTATACAGTCGA 625
|| | || |||||||||||| |||| || | |||||||| || ||||||||||| ||
Sbjct 465 AAGCA-GTTAATGAAAAATGTAGGAACCTAGCA-AAACGTGTGGCGTTCTATACAGTTGA 522
Query 626 TTGTAGAGACTCATGTGGTGAAATCTTTGTGGACCTCCAAGA-TTACAAGTACACAAAGA 684
|||||||| ||||||||| ||||| ||||| ||||| || || ||| |||||||||||||
Sbjct 523 TTGTAGAGGCTCATGTGGCGAAATATTTGTCGACCTGCA-GAATTATAAGTACACAAAGA 581
Query 685 AAAAGCTTGAAGAGATGGTGGAATGCGAACTAA-ATTTTCCAAGTTTTCAGGAAGCTA-T 742
|||||||||| || | |||||||| ||||||| |||| ||||||||| |||| || | |
Sbjct 582 AAAAGCTTGATGAAACAGTGGAATGTGAACTAACATTT-CCAAGTTTTGAGGAGGC-AGT 639
Query 743 ATCGGTACCATGGAAACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGT 802
|| | |||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 640 TTCAGCACCATGGAAACCGATTCCAAGGAGAACAGCAAAGCTCTACTTTGCAATCAGAGT 699
Query 803 AATAGAAGTGTTTGAAGAGAGTGAAGGGCGTAAACATGGAGAATGTTCGCTA-CTCGATC 861
|||||| | ||||| || | |||||||||||||| ||| ||||||||||| || ||||
Sbjct 700 GATAGAACTATTTGAGGAAACTGAAGGGCGTAAACCTGGGGAATGTTCGCTGTCT-GATC 758
Query 862 TTGCCA-GAGTCTTGGAAA-TCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAG 919
| ||| |||| ||| ||| |||||||| |||||||||||| ||| || || |||||||
Sbjct 759 TC-CCAAGAGTTTTG-AAACTCAAAAAGGAACTCTGTGAGGGAAATTCGGTTAGCGAGAA 816
Query 920 CCATATACCAGATATTCTCTTGGAGAGACT--TATCACTGGTA-CTACTGAATTCCCGCC 976
||||| ||||||| ||| |||||||||| |||| ||||| | || |||||||| ||
Sbjct 817 ACATATTCCAGATAGCCTCCTGGAGAGACTAGTATC--TGGTAAC-ACAGAATTCCCACC 873
Query 977 AGTTTGTGCCATTGTGGGAGGAATAT-TAGCACAGGAGGTGATCAAAGC-AGTATCAGGC 1034
|| ||||||||| | ||||| || | ||| |||||||||||| |||| | |||| |||
Sbjct 874 AGCTTGTGCCATCATTGGAGGGAT-TCTAGGACAGGAGGTGATAAAAGTTA-TATCGGGC 931
Query 1035 AAAGGAGACCCGTTGAAAAACTTCTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATG 1094
|||||||| |||||||| ||||||||||||| ||||| || |||||||||||||| ||
Sbjct 932 AAAGGAGAGCCGTTGAAGAACTTCTTCTACTTTGATGCAGAGGATGGGAAAGGTGTAATC 991
Query 1095 GAAGAC 1100
||||||
Sbjct 992 GAAGAC 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5