BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24950.1
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492343 jgi|Araly1|492343|fgenesh2_kg.7__1776__AT4G24950.1 606 4e-173
> Ahg492343 jgi|Araly1|492343|fgenesh2_kg.7__1776__AT4G24950.1
Length=471
Score = 606 bits (328), Expect = 4e-173
Identities = 430/478 (90%), Gaps = 11/478 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAAAGAGAGGAGAGTAGTTC-ACACGAACATCTGAAGGAGAAGTTGAGAGAGCT 59
||||||||||||||||| | | || ||||||| ||| || || |||||||||||||
Sbjct 1 ATGGAAGAAAGAGAGGA-A--A-ATCGACACGAAGGTCTTCAGCAGCAGTTGAGAGAGCT 56
Query 60 TGAGGAGGAATGGACAGCCATGAAAACAGGTAAAAACTCATCTGCGGTTTCATGGATTAC 119
|||||| |||||||||||||||||||| |||||| | |||||||| ||||||||||| ||
Sbjct 57 TGAGGAAGAATGGACAGCCATGAAAACCGGTAAACATTCATCTGCAGTTTCATGGATCAC 116
Query 120 CGTGGAAGATGCTCTTGAGTATGTCGAAAACTCTCCCAGAAACCTAATGCTCTCTCTCCA 179
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGTGGAAGAAGCTCTTGAGTATGTCGAAAACTCTCCCAGAAACCTAATGCTCTCTCTCCA 176
Query 180 ACACAAACCAAAGGCAGAGATGATACAAGAAATATCGCCATTAAGGAGAAAACTCTTTCA 239
|||||||||| |||||||||||||||| |||| ||| || ||||||||||||||||||||
Sbjct 177 ACACAAACCAGAGGCAGAGATGATACACGAAAGATCACCTTTAAGGAGAAAACTCTTTCA 236
Query 240 CGACTCTGATGATGATGATCAAACTAAGAAGACGACATTGCTTTCTCATTCATCTTGTTG 299
||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 237 CGACTTTGATGATGATGATCAAACCAAGAAGACGACATCGTTTTCTCATTCATCTTGTTG 296
Query 300 GTCTTCGAATGTGACGAGTTCGAGTGATACCACGAAAGCAAAGAAGAAGACAACGATTAG 359
|||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||| |
Sbjct 297 GTCTTCGAATGTGACGAGTTCGAGTGATACTAGGAAATCAAAGAAGAAGACGACGATT-G 355
Query 360 AA-G-ATTTGTTTCTGTTACAATGGTGCTGCTTTTGTCATGGGTTTTAGT-TGTGTTGAT 416
|| | ||| || |||||||| |||||| |||||||||||||||||||| | |||||||||
Sbjct 356 AAAGGATT-GTCTCTGTTACTATGGTGTTGCTTTTGTCATGGGTTTTA-TATGTGTTGAT 413
Query 417 GAACCACTTTGATCATCTCTCCATGAATACACAAATCATTACTTTGGTTCCTACTTGA 474
|||| |||||||||||||| |||||||||||| |||| ||||||||||||||| |||
Sbjct 414 GAACGGCTTTGATCATCTCTTCATGAATACACATATCAATACTTTGGTTCCTACATGA 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17170015050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5