BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24972.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945600 jgi|Araly1|945600|scaffold_701829.1 809 0.0
Ahg945599 jgi|Araly1|945599|scaffold_701828.1 178 7e-44
> Ahg945600 jgi|Araly1|945600|scaffold_701829.1
Length=592
Score = 809 bits (438), Expect = 0.0
Identities = 542/588 (92%), Gaps = 24/588 (4%)
Strand=Plus/Plus
Query 187 CGACGTCTACGCACATGAACCGACGGCGACTTTTGGTATCGGCGACACTGCTCTCGTATT 246
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 7 CGACGTCTAGGCACATGAACCGACGGCGACTTTTGGTATCGGCGACACTGGTCTCGTACT 66
Query 247 TGCTCTACGGCATGGCTCTCGTCTCCGTTGAAGCCTCCGGT-G--------------GTG 291
||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 67 TGCTCTACGGCATGGCTTTCGTCTCCGTTGAAGCCTCCGGTGGTACTAAAATCAAACGTG 126
Query 292 AAAAGCTTAGAGATAATCTGGATTTGACTAAAACGACGACGTCGTCACCGAGCAT-ATCA 350
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 127 AAAAGCTTAGAGATTATCTGGATTTGACTAAAACGACGACGTTGTCACCGAGC-TCATCA 185
Query 351 CATCGGAAAATGCTGCTTCTCTCTCCTGGTACT------GGAAAAACAGAAAGGAGTGTA 404
|||||||||||||| ||||||||||||||| || |||||| ||||||| || | |
Sbjct 186 CATCGGAAAATGCTTCTTCTCTCTCCTGGTCCTGAAAAAGGAAAAGCAGAAAGCAGGGCA 245
Query 405 GAGCCGGAGAGAATTGGAGAAAAGTGCAAGAGTACGGACATAGTGGTGAACCAAGCAGTA 464
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 246 GAGCCGGAGAGAATCGGAGATAAGTGCAAGAGTACGGACATAGTGGTGAACCAAGCAGTA 305
Query 465 ACGGAACCAATGCCTAACGGAATACCAGGCTACATGGTAGAGATAACGAACCAGTGTATG 524
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 306 ACGGAACCAATGCCTAACGGAATACCAGGTTACATGGTAGAGATAACGAACCAGTGTATG 365
Query 525 TCTGGATGCATAATTTCGAGGATCCACATCAACTGCGGTTGGTTCAGCTCAGCTAAGTTG 584
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 366 TCTGGATGCATAATTTCGAGGATCCACATCAACTGCGGGTGGTTCAGCTCGGCTAAGTGG 425
Query 585 ATAAACCCAAGAGTCTTCAAGCGTATTCACTACGACGACTGTCTCGTCAACAACGGCAAG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ATAAACCCAAGAGTCTTCAAGCGTATTCACTACGACGACTGTCTCGTCAACAACGGCAAG 485
Query 645 CCTTTGCCTTTTGGCTCCACTCTCTCTTTTCACTACGCCAACACTTTCCCTTACCATCTC 704
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CCTTTACCTTTTGGCTCCACTCTCTCTTTTCACTACGCCAACACTTTCCCTTACCATCTC 545
Query 705 TCTGTCGCCTTCGTGACATGTGCTTAGGTCGTGGCtttttcttttagt 752
||||||||||||||||| ||| ||||||| ||||||||| ||||||||
Sbjct 546 TCTGTCGCCTTCGTGACCTGTTCTTAGGTGGTGGCTTTT-CTTTTAGT 592
> Ahg945599 jgi|Araly1|945599|scaffold_701828.1
Length=1030
Score = 178 bits (96), Expect = 7e-44
Identities = 110/116 (95%), Gaps = 3/116 (3%)
Strand=Plus/Minus
Query 820 AAATATGAGATTAGTCGTATTCATACCATACCATCCACTTTTGTTTTTTGGTTCTCTTGG 879
|||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1030 AAATATGAGATTAGTCATATTCATACGATAACATCCACTTTTGTTTTTTGGTTCTCTTGG 971
Query 880 GATGTGAAACAGTGATAGATAAATGAATATATATCCAAACTCTTTTTTCCCTCTCT 935
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 970 GATGTGAAACAGTGATAGATAAATGAATATAT--C-AAACTCTTTTTTCCCTCTCT 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5