BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24975.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945598 jgi|Araly1|945598|scaffold_701827.1 425 9e-119
Ahg931283 jgi|Araly1|931283|scaffold_303740.1 381 2e-105
> Ahg945598 jgi|Araly1|945598|scaffold_701827.1
Length=450
Score = 425 bits (230), Expect = 9e-119
Identities = 348/406 (86%), Gaps = 4/406 (1%)
Strand=Plus/Plus
Query 1 ATGAATGGCTCTTCAGCGTTTCACATAATATTGAGTGTTACATTCATGGTTTTTCTCTTT 60
|||| ||||||||| | ||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 23 ATGAGTGGCTCTTCGGTATTTCACATAATTTTGAATGTCACATTCATGGTTTTTCTCTTT 82
Query 61 GGTGGTCTCTGCGAGGCTGGTGTTGTGGTAAACGTGGATATCATCAATGATATTGGTCCA 120
||||||||||| |||||| | |||| |||| | ||| ||||| |||||||||||||||
Sbjct 83 GGTGGTCTCTGTGAGGCTCTTCCTGTGCTAAAGGCGGACATCATTAATGATATTGGTCCA 142
Query 121 AATGTTCAACTGGGACTACACTGCAAATCGAAGGACAAAGATCTCGGACCACAATCTTTA 180
||||||||| ||||| |||||||||||||||| || ||||||||||| |||||||||||
Sbjct 143 AATGTTCAATTGGGATTACACTGCAAATCGAAACACGAAGATCTCGGAGCACAATCTTTA 202
Query 181 GCCCCTCAACAACACTGGGGGTTTAGAAAAACACTTGATTTTTGGGGCGTGACTCTGttt 240
|||||||| ||||||||||||||| ||||| | ||||| |||||||| |||||| |||
Sbjct 203 GCCCCTCATCAACACTGGGGGTTTGGAAAATCTCTTGAATTTTGGGGAACGACTCTTTTT 262
Query 241 ttttGTCATTTTGAATGGGAAAACCAATCCAAATGGTTTGATATTCTTGTTGCTGGGAGA 300
|||||||||||| |||||| |||||||| |||||||| ||||||||| || | |||
Sbjct 263 TTTTGTCATTTTCAATGGGGCAACCAATCTAAATGGTTCAATATTCTTGATGGTAACAGA 322
Query 301 GAT-AGAAATACATGTGCTGAACATCCGTGTGTTTGGAGTATAAGACCTAGTGGTCCATG 359
||| | ||| | ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 323 GATAAAAAAGA-ATGTGATGTCCATCCGTGTGTTTGGAGTATAAGACCTAGTGGTCCATG 381
Query 360 TAGACTAACGGGTAA-AGAAAAATGTTTCCCATGGAATGATCAGTA 404
|| | |||| ||| | | | || |||||||||||||||||||||||
Sbjct 382 TAAATTAACAGGTCATACACAA-TGTTTCCCATGGAATGATCAGTA 426
> Ahg931283 jgi|Araly1|931283|scaffold_303740.1
Length=441
Score = 381 bits (206), Expect = 2e-105
Identities = 336/399 (84%), Gaps = 8/399 (2%)
Strand=Plus/Plus
Query 1 ATGAATGGCTCTTCAGC-GTTTCACATAATATTGAGTGTTACATTCATGGTTTTTCTCTT 59
|||| | |||| || || |||| ||||||||| ||||| |||||| |||||||||||||
Sbjct 21 ATGAGTTGCTCATCGGCATTTTC-CATAATATTTAGTGTAACATTCGTGGTTTTTCTCTT 79
Query 60 TGGTGGTCTCTGCGAGGCTGGT-GTTGTGGTA-AACGTGGATATCATCAATGATATTGGT 117
| ||||| ||| ||||| | | || |||| || ||||| ||||| ||||||||||||
Sbjct 80 CAGCGGTCTTTGCAAGGCTAATCG-TGAGGTACAA-GTGGACATCATTAATGATATTGGT 137
Query 118 CCAAATGTTCAACTGGGACTACACTGCAAATCGAAGGACAAAGATCTCGGACCACAATCT 177
||||| ||||| ||||||||||||||||||| ||| |||||||||||||| |||| |||
Sbjct 138 TCAAATATTCAATTGGGACTACACTGCAAATCAAAGCACAAAGATCTCGGATCACATTCT 197
Query 178 TTAGCCCCTCAACAACACTGGGGGTTTAGAAAAAC-ACTTGATTTTTGGGGCGTGACTCT 236
||||||| || ||||| |||||||||||| || | | || ||||||||| |||||
Sbjct 198 TTAGCCCAACATCAACATTGGGGGTTTAGAGAATCTA-TTAATTTTTGGGATACAACTCT 256
Query 237 GtttttttGTCATTTTGAATGGGAAAACCAATCCAAATGGTTTGATATTCTTGTTGCTGG 296
|||||||||||| |||| ||||||||| ||||| ||||||||||||||||||| |||
Sbjct 257 GTTTTTTTGTCACTTTGTATGGGAAAATCAATCTAAATGGTTTGATATTCTTGAAGCTAA 316
Query 297 GAGAGATAGAAATACATGTGCTGAACATCCGTGTGTTTGGAGTATAAGACCTAGTGGTCC 356
||||||| ||||| ||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 317 CAGAGATAAAAATATATGTGAACATCATCCCTGTGTTTGGAGTATAAGACCTAGTGGTCC 376
Query 357 ATGTAGACTAACGGGTAAAGAAAAATGTTTCCCATGGAA 395
||||||| |||||||| ||||||||||||||||||||||
Sbjct 377 ATGTAGATTAACGGGTCAAGAAAAATGTTTCCCATGGAA 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14651746176
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5