BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24980.1 Length=813 Score E Sequences producing significant alignments: (Bits) Value Ahg945599 jgi|Araly1|945599|scaffold_701828.1 424 7e-118 > Ahg945599 jgi|Araly1|945599|scaffold_701828.1 Length=1030 Score = 424 bits (229), Expect = 7e-118 Identities = 312/352 (89%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 117 GCCACTATTGGAGCAAAACTTGTACTATACAGGCATGCAGCTCACAACGCCCACTTTCAC 176 |||| | |||||||||||||||||||| ||||||||||||||||||||| | |||||||| Sbjct 260 GCCATTGTTGGAGCAAAACTTGTACTACACAGGCATGCAGCTCACAACGGCGACTTTCAC 319 Query 177 TTCCGGAATGTTCAACCTACTCCCGGCCATTACATTTGTGATGGCCTGTATATTCAGGTT 236 | ||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| Sbjct 320 TGCCGCTATGTTCAACCTAATCCCGGCCATTACATTTGTAATGGCCTGTGTATTCAGGTT 379 Query 237 GGAGAAAGTGGCTATTCACAGTCATCGAGGAAAAGCAAAAGTTCTTGGAACGTGTGTGGC 296 |||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| Sbjct 380 GGAGAAAGTGTCTATTCACACTCATCGAGGAAAAGCAAAAGTGGTTGGGACGTGTGTGGC 439 Query 297 GGTTGCTGGAGCAATGCTGATGACATTTTGGAGAGGCCAGGTGATTCCATTGCCATGGAA 356 |||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||| Sbjct 440 GGTTGCGGGAGCGATGATGATGACATTTTGGAGCGGCCAGGTGATTCCGTTGCCATGGAC 499 Query 357 CAGCTTGCTGCACGCAAAGAAGATCCACA-GACATGATGA-GGACATCCTAAG-AGGAGG 413 ||| | |||||| || |||||||| |||| | |||| ||| || ||| || || |||||| Sbjct 500 CAGGTCGCTGCATGCCAAGAAGATTCACATG-CATGCTGATGG-CAT-CTTAGAAGGAGG 556 Query 414 GCTTATGCTAGTGTGCAGCTGCTTGAGTTGGAGCTTCTATGTTATTCTTCAG 465 ||| ||| | |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 557 GCTAATGATTGTGTCCAGCTGCCTGAGTTGGAGCTTCTATGTTATTCTTCAG 608 Score = 176 bits (95), Expect = 2e-43 Identities = 133/149 (89%), Gaps = 11/149 (7%) Strand=Plus/Plus Query 513 GGATGTTTCTCAGCAACAACGGTTTACGTTGTTGGGTGGATGGCACAGAAG-A------A 565 |||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 771 GGATGTTTCTCAGCAATAACGGTTTACGTTGTTGGGTGGATGGCACAGAAGAAGGGTCCA 830 Query 566 G-G---GTGAGTATCTTCAATCCAATCAATCTGATTGCCACGGCGGTCATTAGCTCGGTT 621 | | ||||| |||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 831 GTGTTCGTGAGCATCTTCAATCCAATCAATTTGATTGTCACGGCGGTCATTAGCTCGGTC 890 Query 622 GTACTCTCTGAGCAGATGTTTGTCGGGAG 650 ||||||||||||||||||||||||||||| Sbjct 891 GTACTCTCTGAGCAGATGTTTGTCGGGAG 919 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30040858596 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5