BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G24980.1

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945599 jgi|Araly1|945599|scaffold_701828.1                        424    7e-118


> Ahg945599 jgi|Araly1|945599|scaffold_701828.1
Length=1030

 Score =  424 bits (229),  Expect = 7e-118
 Identities = 312/352 (89%), Gaps = 6/352 (2%)
 Strand=Plus/Plus

Query  117  GCCACTATTGGAGCAAAACTTGTACTATACAGGCATGCAGCTCACAACGCCCACTTTCAC  176
            |||| | |||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct  260  GCCATTGTTGGAGCAAAACTTGTACTACACAGGCATGCAGCTCACAACGGCGACTTTCAC  319

Query  177  TTCCGGAATGTTCAACCTACTCCCGGCCATTACATTTGTGATGGCCTGTATATTCAGGTT  236
            | |||  |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct  320  TGCCGCTATGTTCAACCTAATCCCGGCCATTACATTTGTAATGGCCTGTGTATTCAGGTT  379

Query  237  GGAGAAAGTGGCTATTCACAGTCATCGAGGAAAAGCAAAAGTTCTTGGAACGTGTGTGGC  296
            |||||||||| ||||||||| |||||||||||||||||||||  |||| |||||||||||
Sbjct  380  GGAGAAAGTGTCTATTCACACTCATCGAGGAAAAGCAAAAGTGGTTGGGACGTGTGTGGC  439

Query  297  GGTTGCTGGAGCAATGCTGATGACATTTTGGAGAGGCCAGGTGATTCCATTGCCATGGAA  356
            |||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||| 
Sbjct  440  GGTTGCGGGAGCGATGATGATGACATTTTGGAGCGGCCAGGTGATTCCGTTGCCATGGAC  499

Query  357  CAGCTTGCTGCACGCAAAGAAGATCCACA-GACATGATGA-GGACATCCTAAG-AGGAGG  413
            ||| | |||||| || |||||||| |||| | |||| ||| || ||| || || ||||||
Sbjct  500  CAGGTCGCTGCATGCCAAGAAGATTCACATG-CATGCTGATGG-CAT-CTTAGAAGGAGG  556

Query  414  GCTTATGCTAGTGTGCAGCTGCTTGAGTTGGAGCTTCTATGTTATTCTTCAG  465
            ||| ||| | |||| ||||||| |||||||||||||||||||||||||||||
Sbjct  557  GCTAATGATTGTGTCCAGCTGCCTGAGTTGGAGCTTCTATGTTATTCTTCAG  608


 Score =  176 bits (95),  Expect = 2e-43
 Identities = 133/149 (89%), Gaps = 11/149 (7%)
 Strand=Plus/Plus

Query  513  GGATGTTTCTCAGCAACAACGGTTTACGTTGTTGGGTGGATGGCACAGAAG-A------A  565
            |||||||||||||||| |||||||||||||||||||||||||||||||||| |      |
Sbjct  771  GGATGTTTCTCAGCAATAACGGTTTACGTTGTTGGGTGGATGGCACAGAAGAAGGGTCCA  830

Query  566  G-G---GTGAGTATCTTCAATCCAATCAATCTGATTGCCACGGCGGTCATTAGCTCGGTT  621
            | |   ||||| |||||||||||||||||| |||||| ||||||||||||||||||||| 
Sbjct  831  GTGTTCGTGAGCATCTTCAATCCAATCAATTTGATTGTCACGGCGGTCATTAGCTCGGTC  890

Query  622  GTACTCTCTGAGCAGATGTTTGTCGGGAG  650
            |||||||||||||||||||||||||||||
Sbjct  891  GTACTCTCTGAGCAGATGTTTGTCGGGAG  919



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040858596


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5