BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24990.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492339 jgi|Araly1|492339|fgenesh2_kg.7__1772__AT4G24990.1 1251 0.0
> Ahg492339 jgi|Araly1|492339|fgenesh2_kg.7__1772__AT4G24990.1
Length=900
Score = 1251 bits (677), Expect = 0.0
Identities = 849/924 (92%), Gaps = 43/924 (5%)
Strand=Plus/Plus
Query 1 AGAAGTGACGACgaaaagaaaggggaaaaaaaaaaggaaggaaaaaagtgaaaaCCGTCG 60
||||||||||||||||||||| | |||||| || |||||| ||||||||||
Sbjct 1 AGAAGTGACGACGAAAAGAAA--TG----AAAAAA--AA--AAAAAA---AAAACCGTCG 47
Query 61 GCTTGAGAAGGAACTTTGATATTTGGTGA--C-TCTTGAAAAAAG--CAAGC-TCTTTCT 114
| ||||||||||||||||||||||||||| | ||||| |||||| | | |||| ||
Sbjct 48 GTTTGAGAAGGAACTTTGATATTTGGTGACTCTTCTTG-AAAAAGCTCTTTCTTCTTCCT 106
Query 115 T-CTTC--CTTCTTTCGCTTTTTTCACACCTCAAAATCAAAGATCCGAAACACGATTTCG 171
| |||| |||||||||| ||||||||||||| |||||||||||||| || |||| ||
Sbjct 107 TCCTTCTTCTTCTTTCGC-TTTTTCACACCTC-AAATCAAAGATCCG-AAGACGA--TC- 160
Query 172 GAGGAAGCTTCGA-T-TCTAC--CTATTTTCAGATCTGAAATAGTTGTGTTTGAGAAGCG 227
||||||| ||| | ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 161 CCGGAAGCTACGATTGTCTACTTTTTTTTTCAGATCTGAAATAGTTGTGTTTGAGAAGCG 220
Query 228 GGATTGGTGATCGGAGCTGGAATTTGGTTGGTAATCGGAGGTCAGAGAGAAGTCAACGGA 287
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 221 GGATTGGTGATCGGAGCTGGAATTTGG-TGGTAATCGGAGGTCAGAGAGAAGTCAACGGA 279
Query 288 TATGCCGGAGGAAGAATCGATAGATATCAAATTCAGGTTGTACGATGGCTCCGATATCGG 347
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TATGCCGGAGGAAGAGTCGATAGATATCAAATTCAGGTTGTACGATGGCTCCGATATCGG 339
Query 348 GCCTTTTCGGTATTCTGCGGCTTCTACTGTTGACTTTTTGAAGCAGAGGGTCGTCTCTGA 407
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 340 GCCTTTTCGGTATTCTGCGGCTTCTACTGTTGATTTTTTGAAGCAGAGGGTCGTCTCTGA 399
Query 408 TTGGCCCAAAGGCAAAACAGTTGTTCCAAAGGGGATAAACGAAGTGAAGCTGATAAGCTC 467
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 400 TTGGCCCAAAGGCAAAACAGTTGTGCCAAAAGGGATAAATGAAGTGAAGCTGATAAGCTC 459
Query 468 GGGTAAGATCTTGGAGAACAACAAGACTGTTGGGCAGTGTAAGACACCATTTGGAGATAT 527
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 460 GGGTAAGATCTTGGAGAACAACAAGACTGTCGGGCAGTGTAAGACACCATTTGGAGAGAT 519
Query 528 TGCTGGTGGAGTCATTGTGATGCATGTTGTTGTACAGCCTTCTCTAGCTAAATCCAAAAC 587
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 520 TGCTGGTGGAGTCATTGTCATGCATGTTGTTGTACAGCCATCTCTAGCTAAAACCAAAAC 579
Query 588 AGAGAAGAAGGTTGATAAAGCACCAAAGGCAGTAATCTGCACATGCACCATTTTGTGAAG 647
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 580 AGAGAAGAAGGTTGATAAAGCACCAAAGGCGGTAATCTGCACATGCACCATTTTGTGAAG 639
Query 648 GGAGGAAGACCAATGTATCTATCATACACATCGTTTCAATTCTTCCGGTACAGAAGaaaa 707
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 640 GGAGCAAGACCAATGTATCTATCATACACATCGTTTCAATTCTTCAGGTACAGAAGAAAA 699
Query 708 caaaatcaaaaaaagaaagctaaaagtaaagtaaagCTTCCCTTTAAGCTGTGGAGTTAT 767
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 CAAAATCAAAAAA-GAAAGCTAAAAGTAAAGTAAAGCTTCCCTTTAAGCTGTGGAGTTAT 758
Query 768 -TT-ATCATCTTTGAATGTGTAGAAAATGAACTATAAATTCTTTTCAAGTAACTCTTTGT 825
|| || ||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 759 ATTTATTATCTTTGAATGTGTAGAAATTGAACTA-AA-TTCTTTTCAAGTAACTCTTTGT 816
Query 826 CCCTTATTTGTTTTTT----CTTCTTACTTTCCCAATGTATGGAAGCTGTATAGGTTACT 881
||||| |||||||||| ||||||||||||| |||||| ||||| |||||||||||||
Sbjct 817 CCCTTCTTTGTTTTTTTTTTCTTCTTACTTTCCGAATGTACGGAAGTTGTATAGGTTACT 876
Query 882 AGGTCCATTACGTTACGTGTGATG 905
||||||||||| ||||||||||||
Sbjct 877 AGGTCCATTACATTACGTGTGATG 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5