BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25000.1
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492338 jgi|Araly1|492338|fgenesh2_kg.7__1771__AT4G25000.1 2158 0.0
> Ahg492338 jgi|Araly1|492338|fgenesh2_kg.7__1771__AT4G25000.1
Length=1372
Score = 2158 bits (1168), Expect = 0.0
Identities = 1307/1375 (95%), Gaps = 5/1375 (0%)
Strand=Plus/Plus
Query 1 AAACCATTCACAATCAGACAATGACATCTCTCCATACGTTACtcttctcttctcttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAACCATTCACAATCAGACAATGACATCTCTCCATACGTTACTCTTCACTTCTCTTCTTT 60
Query 61 tcttcATCGTCTTTCCAACCTTCACGTTTTCCTCCACCTTATTGTTTCAGAGTTTCAATT 120
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCATCGTCTTCCCAGCCTTCACGTTTTCCTCCACCTTATTGTTTCAGAGTTTCAATT 120
Query 121 GGGAGTCATGGAAGAAAGAAGGAGGATTCTACAATTCTCTCCACAACTCCATTGACGACA 180
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 121 GGGAATCATGGAAGAAAGATGGAGGATTCTACAATTCTCTCCACAACTCCATCGACGACA 180
Query 181 TAGCCAACGCTGGAATCACTCATCTTTGGCTTCCTCCTCCTTCTCAATCCGTTGCTCCTG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAGCCAACGCTGGAGTCACTCATCTTTGGCTTCCTCCTCCTTCTCAATCCGTTGCTCCTG 240
Query 241 AAGGTTACTTACCGGGAAAGCTATACGATCTAAACAGCTCCAAATACGGTTCAGAGGCGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 241 AAGGTTACTTACCGGGAAAGCTATACGATCTAAACAGCTCCAAATACGGTTCTGAAGCTG 300
Query 301 AACTGAAATCGTTAATCAAAGCGTTGAATCAAAAAGGAATAAAAGCTTTGGCTGATATAG 360
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 301 AACTGAAATCGTTAATCAAAGCGTTGAACCAAAAAGGAATAAAATCATTGGCTGATATAG 360
Query 361 TGATTAACCACAGAACAGCTGAGAGGAAAGACGATAAATGTGGATACTGTTATTTCGAAG 420
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 361 TGATTAACCACAGAACAGCTGAGAGGAAAGACGATAAATGCGGGTACTGTTACTTCGAAG 420
Query 421 GTGGGACTTCCGATGATCGTCTTGATTGGGATCCTTCCTTTGTCTGCCGCAATGACCCTA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GTGGGACTTCCGATGATCGTCTTGATTGGGATCCTTCCTTCGTCTGCCGCAATGACCCTA 480
Query 481 AATTTCCCGGTACCGGAAACCTCGACACCGGAGGAGATTTTGATGGAGCGCCCGACATCG 540
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 AGTTTCCCGGTACCGGAAACCTCGACACCGGAGGAGATTTTGATGGAGCGCCTGACATCG 540
Query 541 ACCACCTTAACCCTAGAGTTCAGAAAGAGTTGTCCGAATGGATGAATTGGCTTAAAACTG 600
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 541 ACCACCTTAACCCTAGAGTTCAGAAAGAGTTGTCGGAATGGATGAATTGGCTTAAATCTG 600
Query 601 AAATCGGATTCCATGGTTGGAGATTTGATTATGTTCGAGGTTATGCATCTTCCATCACCA 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAATAGGATTCCATGGTTGGAGATTTGATTATGTTCGAGGTTATGCATCTTCCATCACCA 660
Query 661 AATTATACGTTCAGAATACATCACCGGATTTTGCGGTGGGTGAGAAATGGGACGATATGA 720
||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 661 AATTATATGTTCAGAATACTTCACCGGATTTTGCGGTGGGTGAGAACTGGAACGATATGA 720
Query 721 AGTACGGAGGAGACGGGAAACTAGACTATGATCAGAACGAGCATCGGTCGGGTCTCAAAC 780
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 AGTATGGAGGAGACGGGAAACTAGACTATGATCAAAACGAGCATCGGTCGGGTCTCAAAC 780
Query 781 AGTGGATCGAGGAAGCGGGTGGTGGTGTGTTGACAGCTTTTGATTTCACCACCAAAGGGA 840
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 781 AGTGGATCGAGGAAGCGGGTGGTGGTGTGTTAACAGCTTTTGATTTTACCACTAAAGGGA 840
Query 841 TCTTACAGTCTGCTGTCAAAGGTGAGCTTTGGAGACTAAAGGACTCGCAGGGAAAACCGC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTTACAGTCTGCTGTCAAAGGTGAGCTTTGGAGACTAAAGGACTCGCAGGGAAAACCGC 900
Query 901 CTGGTATGATAGGAATCA-TGCCCGGAAACGCTGTCACATTCATAGATAACCATGATACA 959
||||| |||| ||||||| | ||||||||||| ||||| |||||||| |||||||| ||
Sbjct 901 CTGGTCTGATCGGAATCAAT-CCCGGAAACGCGGTCACTTTCATAGACAACCATGACACT 959
Query 960 TTCAGAACGTGGGTTTTCCCTTCTGATAAAGTCTTGCTTGGATACGTTTATATACTTACT 1019
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 960 TTCAGAACGTGGACTTTCCCTTCTGATAAAGTCTTGCTTGGATACGTTTATATTCTCACT 1019
Query 1020 CATCCAGGAACTCCTTGCATTTTTTATAATCATTACATAGAATGGGGACTAAAAGAGAGC 1079
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATCCGGGAATTCCTTGCATTTTTTATAATCATTACATAGAATGGGGACTAAAAGAGAGC 1079
Query 1080 ATCTCAAAGCTGGTGGCTATCAGGAACAAAAATGGGATTGGTAGCACAAGCTCTGTAACG 1139
||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||
Sbjct 1080 ATCTCCAAGCTGGTGGCGATCAGGAACAAAAATGGCATTGGTAACACAAGCTCTGTTACG 1139
Query 1140 ATAAAAGCGGCAGAGGCGGATCTCTACTTGGCTA-TGATTGATGATAAAGTTATCATGAA 1198
|| |||| ||| ||| ||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1140 ATCAAAGTGGCGGAGTCGGATCTCTACGTGGCTAAT-ATTGATGATAAAGTTATCATGAA 1198
Query 1199 GATTGGACCAAAGCAAGATGTGGGAACACTTGTTCCTTCTAATTTTGCTTTAGCTTATTC 1258
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 GATTGGACCAAAACAGGATGTGGGAACACTTGTTCCTTCTAATTTTGCGTTAGCTTATTC 1258
Query 1259 AGGCCTTGACTTTGCTGTCTGGGAGAAGAAGTAACGCATAACTCGAATCATAAGAAAAGT 1318
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1259 AGGCCTTGACTTTGCTGTCTGGGAGAAGAAGTAACGCATAACTCAAATCATAAGAAACGT 1318
Query 1319 AATCGAATGTATCTTCTTCCTTTTTAATAAAACATTTTGGCAGTATCTAAAGATA 1373
||||||||||||||| ||||||||||| |||| || ||||| |||||||||||||
Sbjct 1319 AATCGAATGTATCTTTTTCCTTTTTAA-AAAATATCTTGGCCGTATCTAAAGATA 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5