BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25010.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492337 jgi|Araly1|492337|fgenesh2_kg.7__1770__AT4G25010.1 1794 0.0
Ahg949621 jgi|Araly1|949621|scaffold_801508.1 725 0.0
Ahg497249 jgi|Araly1|497249|fgenesh2_kg.91__1__AT5G50800.1 725 0.0
> Ahg492337 jgi|Araly1|492337|fgenesh2_kg.7__1770__AT4G25010.1
Length=1159
Score = 1794 bits (971), Expect = 0.0
Identities = 1104/1167 (95%), Gaps = 14/1167 (1%)
Strand=Plus/Plus
Query 5 CTCTATATATAGTGAACCATTGGCCTCGCTAGTTAATTCATATCGAAGAAAACTCAAATA 64
|||||||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 1 CTCTATATATAGTGTACCATTAGCCTCGCTAGTTAATTCACATCGAAGGAAACTCAAATA 60
Query 65 GAGGAATCAAGAGTCGAAGATCTCTATATATTTTCCC-TTCTCTTGTTTCCTTATTAGTT 123
|||| ||||||||| |||||||||||| || |||||| || ||||||||| || ||||||
Sbjct 61 GAGGCATCAAGAGTGGAAGATCTCTATCTA-TTTCCCATTATCTTGTTTCTTTGTTAGTT 119
Query 124 TTCTCCGACACTCCCATTCAAAAGTAG-AAAGATACTGAAGAGCTCGCTCATT-CACAAA 181
||||| || |||||||||||||||||| |||| |||||||||||||||||||| || |||
Sbjct 120 TTCTCTGATACTCCCATTCAAAAGTAGAAAAGGTACTGAAGAGCTCGCTCATTCCAAAAA 179
Query 182 ATAACCAAAATGGTTCTCACTCACAACGTATTGGCAGTTACATTTGGAGTCCTGGGTAAC 241
||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| |||
Sbjct 180 ATAACCAAAATGGCTCTAACTCACAACGTAATGGCAGTTACATTTGGAGTCATGGGAAAC 239
Query 242 ATCATATCGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCATATCGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAA 299
Query 302 AAATCGATAGAAGGTTTTGAATCACTTCCCTACGTGTCAGCCCTCTTTAGCGCGATGCTA 361
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 AAATCGATTGAAGGTTTTGAATCACTTCCCTACGTGTCAGCGCTCTTTAGCGCGATGCTA 359
Query 362 TGGATTTACTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTTCTCATTACCATAAACGCT 421
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 TGGATTTATTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTCCTCATTACCATAAACGCT 419
Query 422 GTGGGATGCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGGGATGCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAA 479
Query 482 GCTAGAATATCAACTTTGAAGGTTCTTGGGCTCTTGAATTTCTTGGGTTTTGCTGCTATT 541
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GCTAGAATATCAACTTTGAAGGTTCTTGGGCTCTTGAATTTCTTGGGTTTTACTGCTATT 539
Query 542 ATTCTCGTCTGCGAGCTCCTAACCAAAGGATCGAACCGTGAGAAAGTCCTTGGAGGGATT 601
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCTTGTCTGCGAGCTCCTAACCAAAGGATCGAACCGTGAGAAAGTCCTTGGAGGGATT 599
Query 602 TGCGTCGGATTTTCTGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATA 661
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCGTCGGATTTTCCGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATA 659
Query 662 CGAACAAAGAGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGAACAAAGAGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCC 719
Query 722 ATTACGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTACGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATA 779
Query 782 TTGGGTGCGTTTCTCGGAGCAGTCCAAATGATTCTATACGTCATATTCAAGTACTACAAA 841
|||||||||||||| |||||||| |||||| |||| ||||||||||||||||| ||||||
Sbjct 780 TTGGGTGCGTTTCTAGGAGCAGTTCAAATGGTTCTCTACGTCATATTCAAGTATTACAAA 839
Query 842 ACTCCACTAGTGGTTGATGAGACAGAGAAGCCCAAAACGGTGTCGGATCATTCCATCAAC 901
| || | |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GC-CC-C-AGTGGTTGATGAGACAGAGAAGCCTAAAACGGTGTCGGATCATTCCATCAAC 896
Query 902 ATGGTCAAGCTTTCATCTACTCCGGCTTCTGGTGATCTTACGGTTCAGCCGCAGACTAAT 961
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 ATGGTCAAGCTTTCGTCCACTCCGGCTTCTGGTGATCTTACGGTTCAGCCGCAGACTATT 956
Query 962 CCTGACGTGAGTCATCCTATTAAAACTCATGGTGGTGACTTAGAGGACCAGATGGACAAG 1021
| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 957 CTTGACGTGAGTCATCCTGTTCAAACTCATGGTGGTGACTTAGAGGATCAGATGGACAAG 1016
Query 1022 AAAATGCCAAACTAAGTCAAGATTT-AGTTTTCA-ATTATGAATTAGTGATTGACTTTAA 1079
|||||| |||||||| | ||||||| |||||| | ||||| ||||||||||| |||| ||
Sbjct 1017 AAAATGTCAAACTAAATTAAGATTTTAGTTTT-ATATTATAAATTAGTGATTTACTT-AA 1074
Query 1080 TGTTGAACTGTTGAGTCTGGTTTCCTAAT-TTGTCTTTTATTTTCTCATCATCTTCTTTC 1138
||||| |||||||||||||||||| ||| ||||||||||||| |||||||| || ||||
Sbjct 1075 TGTTGTACTGTTGAGTCTGGTTTC-TAAACTTGTCTTTTATTT-CTCATCATTTTGTTTC 1132
Query 1139 GAAATATCTCGAAATTGTACTATCCTT 1165
|||||||||||||||||||||||||||
Sbjct 1133 GAAATATCTCGAAATTGTACTATCCTT 1159
> Ahg949621 jgi|Araly1|949621|scaffold_801508.1
Length=926
Score = 725 bits (392), Expect = 0.0
Identities = 614/721 (85%), Gaps = 15/721 (2%)
Strand=Plus/Plus
Query 189 AAATGGTTCTCACTCACAACGTATTGGCAGTTACATTTGG-AGTCCTGGGTAACATCATA 247
|||||| ||| |||||||| |||| |||| || || || | || ||||||||||||||
Sbjct 20 AAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGCA-TCATGGGTAACATCATA 78
Query 248 TCGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAAAAATCG 307
|| ||| |||| |||||||| |||||||| || |||||| | || |||||||| |||||
Sbjct 79 TCATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGGATATGCAAGAAGAAATCA 138
Query 308 ATAGAAGGTTTTGAATCACTTCCCTACGTGTCAGCCCTCTTTAGCGCGATGCTATGGATT 367
| ||||| ||| | || |||||||| || ||||| || |||||||||||||| ||||||
Sbjct 139 ACCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTTAGCGCGATGCTTTGGATT 198
Query 368 TACTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTTCTCATTACCATAAACGCTGTGGGA 427
||||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||| |||
Sbjct 199 TACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATCACCATAAACGCTGTTGGA 258
Query 428 TGCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAAGCTAGA 487
||| |||||||||||||||||||| ||||||| | |||||||||||||||||| |||||
Sbjct 259 TGCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTATGCTAACAAGAAAACTAGA 318
Query 488 ATATCAACTTTGAAGGTTCTTGGGCTCTTGAA-TTTCTTGGGTTTTGCTGCTATTATTCT 546
||||| |||||||| |||||||| |||||||| ||| |||||||||||||| ||| ||||
Sbjct 319 ATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTT-TTGGGTTTTGCTGCCATTGTTCT 377
Query 547 CGTCTGCGAGCTCCTAACCAAAGGATCGAAC-CGTGAGAAAGTCCTTGGAGGGATTTGCG 605
| ||||||||| ||||| |||| ||| || ||||||||||| || |||||||||||||
Sbjct 378 TGCCTGCGAGCTATTAACCGAAGGTTCG-ACACGTGAGAAAGTTCTCGGAGGGATTTGCG 436
Query 606 TCGGATTTTCTGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATACGAA 665
| || ||||| || |||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 437 TTGGGTTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTGGTACGAA 496
Query 666 CAAAG-AGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCCATT 724
| ||| |||||||||||||||||||||||| |||| |||||||||||||| |||||| |
Sbjct 497 C-AAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGCGCCGTC 555
Query 725 ACGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATATTG 784
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 556 ACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCGCTTCCAAATGTGTTG 615
Query 785 GGTGCGTTTCTC-GGAGCAGTCCAAATGATTCTATACGTCATATTCAAGTACTACAAAAC 843
|| ||||| || ||||| || ||||||||||| ||| | || |||||||||||||||||
Sbjct 616 GGCGCGTT-CTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTCAAGTACTACAAAAC 674
Query 844 TCCACTAGTGGTTGATGA-GACAGAGAAGCCCAAAACGGTGTCGGATCATTCCATCAACA 902
||| || ||| | | || |||||| || | ||| | ||||| |||||||||||| |||
Sbjct 675 TCC--TA-TGGCTCA-GAAGACAGACAAATCTAAAGCCGTGTCCGATCATTCCATCGACA 730
Query 903 T 903
|
Sbjct 731 T 731
> Ahg497249 jgi|Araly1|497249|fgenesh2_kg.91__1__AT5G50800.1
Length=1186
Score = 725 bits (392), Expect = 0.0
Identities = 613/720 (85%), Gaps = 13/720 (2%)
Strand=Plus/Plus
Query 189 AAATGGTTCTCACTCACAACGTATTGGCAGTTACATTTGGAGTCCTGGGTAACATCATAT 248
|||||| ||| |||||||| |||| |||| || || ||| | |||||||||||||||
Sbjct 118 AAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGAATGTTGGGTAACATCATAT 177
Query 249 CGTTCATCGTTTTCTTGGCACCAGTGCCAACTTTTGTAAGAATCTGCAAGAAAAAATCGA 308
| ||| |||| |||||||| |||||||| || |||||| | || |||||||| ||||| |
Sbjct 178 CATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGGATATGCAAGAAGAAATCAA 237
Query 309 TAGAAGGTTTTGAATCACTTCCCTACGTGTCAGCCCTCTTTAGCGCGATGCTATGGATTT 368
||||| ||| | || |||||||| || ||||| || |||||||||||||| |||||||
Sbjct 238 CCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTTAGCGCGATGCTTTGGATTT 297
Query 369 ACTATGCTCTGCAAAAAGATGGAGCAGGCTTCCTTCTCATTACCATAAACGCTGTGGGAT 428
|||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 298 ACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATCACCATAAACGCTGTTGGAT 357
Query 429 GCTTCATCGAAACCATCTACATCATCCTCTTCATCACCTATGCTAACAAGAAAGCTAGAA 488
|| |||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||
Sbjct 358 GCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTATGCTAACAAGAAAACTAGAA 417
Query 489 TATCAACTTTGAAGGTTCTTGGGCTCTTGAA-TTTCTTGGGTTTTGCTGCTATTATTCTC 547
|||| |||||||| |||||||| |||||||| ||| |||||||||||||| ||| ||||
Sbjct 418 TATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTT-TTGGGTTTTGCTGCCATTGTTCTT 476
Query 548 GTCTGCGAGCTCCTAACCAAAGGATCGAAC-CGTGAGAAAGTCCTTGGAGGGATTTGCGT 606
|||||||||||| ||||| |||| ||| || ||||||||||| || ||||||||||||||
Sbjct 477 GTCTGCGAGCTCTTAACCGAAGGTTCG-ACACGTGAGAAAGTTCTCGGAGGGATTTGCGT 535
Query 607 CGGATTTTCTGTTTGTGTTTTCGCAGCTCCTTTGAGCATCATGAGAGTGGTGATACGAAC 666
|||||||| || |||| ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 536 TGGATTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTGGTACGAAC 595
Query 667 AAAG-AGTGTGGAGTTTATGCCTTTCTCTCTATCATTGTTTCTTACAATCAGCGCCATTA 725
||| |||||||||||||||||||||||| |||| |||||||||||||| |||||| | |
Sbjct 596 -AAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGCGCCGTCA 654
Query 726 CGTGGCTCTTCTACGGTCTTGCTATTAAAGACTTCTACGTTGCGCTTCCAAATATATTGG 785
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 655 CGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCGCTTCCAAATGTGTTGG 714
Query 786 GTGCGTTTCTC-GGAGCAGTCCAAATGATTCTATACGTCATATTCAAGTACTACAAAACT 844
| ||||| || ||||| || ||||||||||| ||| | || || ||||||||||||| |
Sbjct 715 GCGCGTT-CTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTTAAGTACTACAAAATT 773
Query 845 CCACTAGTGGTTGATGA-GACAGAGAAGCCCAAAACGGTGTCGGATCATTCCATCAACAT 903
|| || ||| | | || |||||| || | ||| | ||||| |||||||| ||| ||||
Sbjct 774 CC--TA-TGGCTCA-GAAGACAGACAAATCTAAAGCCGTGTCCGATCATTCTATCGACAT 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5