BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25020.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889656 jgi|Araly1|889656|Al_scaffold_0007_1642 1552 0.0
Ahg922444 jgi|Araly1|922444|scaffold_103725.1 396 3e-109
> Ahg889656 jgi|Araly1|889656|Al_scaffold_0007_1642
Length=1116
Score = 1552 bits (840), Expect = 0.0
Identities = 1042/1136 (92%), Gaps = 28/1136 (2%)
Strand=Plus/Plus
Query 44 ATGAAGCTCTCTTTCTCTCTCCCTCCCAAATCGAAATCCAGAGTTAGTCTGAATTCCGAC 103
|||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||
Sbjct 1 ATGAAGCTCTCTTTCTCTCTCCCTCCCAAATCCAAATCCAGAGCCAGGCTGAATTCCGAC 60
Query 104 AGGAAAGACTGCATCGGTGCAGGAAATCTCAAGCAGTTCGTCACCGAATTCGATCCTTCC 163
||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 61 AGGAAAGACGGCGTCGGTGCAGGAAATCTCAAGGAGTTCGTCACTGAATTCGATCCTTCC 120
Query 164 GAAACCCTAACCGACTCCAAACCGAAATACGTTATACCTCCCATTGAGGATCGTCGGAGG 223
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAACCCTAACCTACTCCAAACCGAAATACGTTATACCTCCCATTGAGGATCGTCGGAGG 180
Query 224 TCCTAC-AG--GAGCATTGATCTACCGCTTCCATCAGCTTCAGGTCTCCAATTCGAGGCC 280
||||| || || ||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 181 CCCTACAAGAAGAACATCGATCTCCCGCTTCCATCCGCTTCTGGTCTCCAATTCGAGGCT 240
Query 281 GAGATCCCCTCTGGCGAT-GGC---TCAGATAACAACATTACGTACGGTCTGAATCTGCG 336
|||||| | ||||||||| ||| || | | ||||||||||||||||||||||||||
Sbjct 241 GAGATCACTTCTGGCGATGGGCATGTC-TCTGATAACATTACGTACGGTCTGAATCTGCG 299
Query 337 ACAGAAAGTCGAGAACGTTGAGAAGCCAGAGCCTGTGGAGAAGATGTTACTGAAAAGCAT 396
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCAGAAAGTCGAGGAC---GAGAAGCCAGAGCCTGTGGAGAAGATGTTACTGAAAAGCAT 356
Query 397 GAGGACAGATTTGGAGTCACTCCCTGATGCTCCGGAAAAAGAGGATTTCGAGAGCTTTCC 456
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 GAGGAAAGATTTGGAGTCACTCCCTGATGCTCCGGAATTAGAGGATTTCGAGAGCTTTCC 416
Query 457 TGTGGATGGCTTTGGAGAGGCGTTACTGGCTGGGTATGGGTGGAAACCAGGCCAGGGGAT 516
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 TGTGGATGGCTTTGGAGAGGCGTTACTGGCTGGGTACGGGTGGAAACCAGGCCAGGGGAT 476
Query 517 TGGTCTTAAAGCTAAAGAGGATGTTAAGATTGTTGAATACGAGAAGTGGTCTGGTAATGA 576
|||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 477 TGGTCTAAAAGCTAAAGAAGATGTTAAGATTGTTGAGTACAAGAAGTGGTCTGGTAATGA 536
Query 577 AGGATTTGGCTTTGGTAAATCGGACAAAGCCATGAAGATGATAGATAATAAACTTGTTGG 636
|||||||||||| || | ||| ||||| | |||||| |||||| ||||||||| |
Sbjct 537 AGGATTTGGCTTCAATA--T-GGATAAAGCGAAGAAGATTATAGATGATAAACTTG--G- 590
Query 637 TTCTGGAAGCCATGAGGAAGTGAAAGTTGGTATCAACAAGATTGAAAATATGGAGAAAGA 696
||||||||||||||||||||||||||| ||| |||||||||| || ||| | ||||||||
Sbjct 591 TTCTGGAAGCCATGAGGAAGTGAAAGTGGGTTTCAACAAGATAGATAATGTTGAGAAAGA 650
Query 697 TAGAGTTGTGAGAAAACGTAATAGAGAAACAGAGGGAGAGAGTCGCACTGAAGTTAAAGC 756
|||||| ||| | ||||||| |||||| ||||||||||||||||||||| |||||| |||
Sbjct 651 TAGAGTAGTGCGTAAACGTAGTAGAGATACAGAGGGAGAGAGTCGCACTAAAGTTAGAGC 710
Query 757 CTGTAAGCAGAACTATAGAGGTCAAACTAGAGAGACGAGAGAGAAGACCTCATGGCTTAG 816
||||||||||||||||||||||||||| ||||||| || | | |||||||||||
Sbjct 711 CTGTAAGCAGAACTATAGAGGTCAAACCAGAGAGA--AG-GT-----C-TCATGGCTTAG 761
Query 817 GAGTCATATAAAGGTGAGAATAATAAGCAAGGATGTTAAAGGTGGGAGATTGTATCTTAA 876
||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 762 GAGTCATATAAGGGTGAGAATAATAAGCAAGGATGTGAGAGGTGGGAGATTGTATCTTAA 821
Query 877 GAAAG-CAGTGGTGACTGATGTGGTTGGGCCAACAAGTTGTGATATTGCTATGGATGAGA 935
|||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 822 -AAAGGCAGTGGTGACTGATGTGGTTGGTCCAACAAGTTGTGATGTTGCTATGGATGAGA 880
Query 936 CGCAGGAGTTGGTTCAAGGGATTGATCAGGAGTTGCTTGAGACTGCATTGCCCAGGCGAG 995
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 881 GGCAGGAGTTGGTTCAAGGGATTGAGCAGGAGTTTCTTGAGACTGCATTGCCCAGGAGAG 940
Query 996 GAGGGTCTGTGTTGGTTCTGTCTGGTAGACATAAGGGTGTGTATGGGAGACTAGTTGAGA 1055
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 941 GAGGGTCTGTGTTGGTTCTGTCTGGTAGACATAAGGGTGTGTATGGGAAACTGGTTGAGA 1000
Query 1056 AAGATTTGGATAAGGAAACTGGTGTGGTTTGCGATGCAGATAGCCAGGAGATGCTTCATG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AAGATTTGGATAAGGAAACTGGTGTGGTTTGCGATGCAGATAGCCAGGAGATGCTTCATG 1060
Query 1116 TTAAACTTGACCAAGTCGCCGAGTACATTGGTGATCCTGCTGATATTGGGTACTGA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TTAAACTTGACCAAGTCGCCGAGTACATTGGTGATCCTGCTGATATTGGGTACTGA 1116
> Ahg922444 jgi|Araly1|922444|scaffold_103725.1
Length=1426
Score = 396 bits (214), Expect = 3e-109
Identities = 366/439 (83%), Gaps = 12/439 (3%)
Strand=Plus/Plus
Query 718 TAGAGAAACAGAGGGAGAGAGTCGCACTGAAGTTAAAGCCTGTAAGCAGAACTATAGAGG 777
||||| ||| ||| ||| |||||| | |||||||| || | || || || || |||||||
Sbjct 953 TAGAGGAACGGAGAGAGGGAGTCGAAGTGAAGTTAGAGTCAGTGAGAAGCACGATAGAGG 1012
Query 778 TCAAACTAGAGAGACGAGAGAGAAGACC-TCATGGCTTAGGAGTCATATAAAGGTGAGAA 836
|||||| ||||||| || || |||| || ||||||||||||||||||||||||||| |||
Sbjct 1013 TCAAACAAGAGAGAGGAAAGTGAAG-CCTTCATGGCTTAGGAGTCATATAAAGGTGCGAA 1071
Query 837 TAAT-AAGCAAGG-ATGTTAAAGGTGGGAGATTGTATCTTAAGAAAGCAGTGGT-GACTG 893
|| | || ||||| || | |||||||||||||||||||||||||||| | ||| | ||
Sbjct 1072 TAGTGAA-CAAGGAAT-TGAAAGGTGGGAGATTGTATCTTAAGAAAGGAAAGGTTGT-TG 1128
Query 894 ATGTGGTTGGGCCAACAAGTTGTGATATTGCTATGGATGAGACGCAGGAGTTGGTTCAAG 953
|||| ||||| ||||||| |||||||||| | ||||||||||| || |||||||||||||
Sbjct 1129 ATGTTGTTGGACCAACAACTTGTGATATTACGATGGATGAGACACAAGAGTTGGTTCAAG 1188
Query 954 GGATTGATCAGGAGTTGCTTGAGACTGCATTGCCCAGGCGAGGAGGGTCTGTGTTGGTTC 1013
|| | |||||||||||||||||||| |||||||| || ||||||||| | || ||||||
Sbjct 1189 GGGTGGATCAGGAGTTGCTTGAGACAGCATTGCCTAGACGAGGAGGGCCGGTTTTGGTTT 1248
Query 1014 TGTCTGGTA-GACATAAGGGTGTGTATGGGAGA-CTAGTTGAGAAAGATTTGGATAAGGA 1071
| || || | | ||||||||||| || || | | || |||||||||||||||||||| ||
Sbjct 1249 TATCGGGGAAG-CATAAGGGTGTCTACGGAA-ATCTTGTTGAGAAAGATTTGGATAAAGA 1306
Query 1072 AACTGGTGTGGTTTGCGATGCAGATAGCCAGGAGATGCTTCATGTTAAACTTGACCAAGT 1131
||||||||||||| | ||| ||||| ||| |||||||| |||||| |||||| |||||
Sbjct 1307 AACTGGTGTGGTTCGTGATTTAGATAACCACAAGATGCTTGATGTTAGACTTGATCAAGT 1366
Query 1132 CGCCGAGTACATTGGTGAT 1150
|| |||||||| ||||||
Sbjct 1367 TGCTGAGTACATGGGTGAT 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5