BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25030.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492335 jgi|Araly1|492335|fgenesh2_kg.7__1768__AT4G25030.1 1962 0.0
> Ahg492335 jgi|Araly1|492335|fgenesh2_kg.7__1768__AT4G25030.1
Length=1352
Score = 1962 bits (1062), Expect = 0.0
Identities = 1279/1379 (93%), Gaps = 34/1379 (2%)
Strand=Plus/Plus
Query 36 atctatcttctcCACGTT---ACTACCACCTAACCTCTCATCCACCT-TTTCTCCTTTAA 91
||||||||||||||| || || |||||||||||| | | ||| || | ||||||||||
Sbjct 1 ATCTATCTTCTCCACATTACCACAACCACCTAACCTTTGA-CCATCTCTCTCTCCTTTAA 59
Query 92 GCATATTTCATTTCATCTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTC-TC-ATC 149
||||||||||||||| | | ||||||||||||||||||||||||||||| || ||
Sbjct 60 GCATATTTCATTTCA--T-C----GGAATTGTATCGTTCCTCACACACGCCTCTTCTTTC 112
Query 150 TCTTATCCATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAAA 209
|||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 113 TCTTATCCATTCTTGTCC-TTTCTCAGCTCAACGAGAATGGATAATTGTACCGGAGAAAA 171
Query 210 TCCCATGGCTTCTCAGTTGAACATTCTCCGATGCCCGTTCTTGAGGAACATCAATGAGCC 269
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 172 TCCCATGGCTTCTCAGTTGAACATTCTCCGATGCCCCTTCTTGAGGAACATCAATGAGCC 231
Query 270 CACTAACCTCTCTTTCTCTTCATCCTTGCCTTTTCCCATCCCTGCAAGAGCTGGGAAAGG 329
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 232 CACTAACCTCTCTTTTTCTTCATCCTTGCCTTTTCCCATGCCTGCAAGAGCAGGGAAAGG 291
Query 330 ACCTATATTTGAAGATGGTCCCAATTTTGATACGGCGTTTAGGCTTTTCCATGGCCAAGA 389
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 292 ACCTATATTTGAAGATGGTCCCAATTTTGATACGGCATTTAGGCTTTTCCATGGCCAAGA 351
Query 390 TGGAGTTGTCCCTCTCTCTGACACCGCTCGAACTGAAGCCCAGAAGCCTGTGCCTGTATT 449
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 352 TGGAGTTGTCCCTCTCTCTGACACCGCTCGAGCTGAAGCGCAGAAGCCTGTGCCTGTATT 411
Query 450 CCATCCACTTGCTGCTAAGGCGGCCACTATTAGTCTCTCATCCTTTGGATCTGGAGGGCC 509
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||
Sbjct 412 CCATCCACTTGCTGCTAAGGCTGCCACAATTAGTCTCTCATCCTTTGGACCTGGAGGCCC 471
Query 510 TTTTGGATTTGATGCATTTTCTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATC 569
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 472 TTTTGGGTTTGATGCATTTTCTGACATGTTTAAAAATCAAAAGAACAAGTCTGATTCATC 531
Query 570 CAAAAATAAGGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAAAAATAAGGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTG 591
Query 630 CCCAATAGCAAAATCATATCGAGCTGTAAGTGGTGTGGCACCACTTGTGGCAAAGATCCT 689
|||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 592 CCCAATTGCAAAGTCATATCGTGCTGTAAGTGGTGTGGCACCGCTTGTGGCAAAGATCCT 651
Query 690 GCAACCCCCTCCAGGCATGAAATTTAAATGCCCTCAAGCAATAGTCACAGCTCGAGCAGC 749
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 652 GCAACCCCCTCCAGGAATGAAATTCAAATGCCCTCAAGCAATAGTCACTGCTCGAGCAGC 711
Query 750 GATATCAAAAACACCTTTCGCCAAGAACCTCCGTCCACAACCTTTACCAGCTAAAGTACT 809
||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 712 AATATCAAAAACACCTTTTGCCAAGAACCTTCGCCCACAACCTTTACCAGCCAAAGTACT 771
Query 810 AGTGATCGGGATGCTGGGCATGGCGTTAAATGTGCCTTTAGGGGTCTGGAGAGAGCACAC 869
||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||
Sbjct 772 AGTGATCGGGATGCTGGGCATGGCGCTAAATGTGCCTCTAGGTGTTTGGAGAGAGCACAC 831
Query 870 TGAAAAGTTTTCGGCATCTTGGTTTATAGCTCTTCACGCAGCGGTTCCATTCATAGGAAT 929
|||||| | ||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 832 TGAAAAATATTCGGCAGCTTGGTTTGTAGCTCTTCACGCAGCGGTTCCATTCATTGGAAT 891
Query 930 ACTGAGAAAGTCAGTGTTGATGCCTAAAACAGCTATGGTATTCACCATAGCAGCATCAGT 989
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 892 ACTGAGAAAGTCAGTGTTGATGCCTAAGACAGCGATGGTATTCACAATAGCAGCATCAGT 951
Query 990 TTTGGGACAGGTGATTGGGTCAAGAGCAGAGAGGCGGAGACTCAAGTCTGTAGCTGAGAA 1049
|||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 952 TTTGGGACAGGTAATTGGGTCAAGAGCAGAGAGGCGGAGGCTCAAGTCGGTTGCTGAGAA 1011
Query 1050 GAAGTTGACATTGGAGGTACCAAATCCGTCTTCTGTTGAAGCAGATCAGATGCAATTTGC 1109
|||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 1012 GAAGTTGACACTGGAGGTACCAATTCCGTCTTCTGCTGAAGCAAATCAGATGCAATTTGC 1071
Query 1110 CGGAGTTTCATCAGATGGAAGATGCGGTGATAAAGTGGTGATGAAGTGGAATCCCATGAT 1169
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1072 GGGAGTTTCGTCAGATGGAAGATGCAGCGATAAAGTGGTGATGAAGTGGAATCCCATGAT 1131
Query 1170 GCTTGATGTTGCAAGCCCTGTGTCTTCCGGAGCAGCTACTGTTGTCTGCTAAA-AGGATT 1228
||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||| || |||
Sbjct 1132 GCTTGATGTTGCAAGTCCTGTGTCTTCAGGAGCAGCTACTGCTGTTTGCTAAACAG-ATT 1190
Query 1229 TTGTAATTCTCTTCGAGGATTTATATATATAATTGTTTTTCTTGTAtttttttCGGCTGA 1288
|||| || | | | ||||||| | |||||||||||||||||||| |||| ||
Sbjct 1191 TTGT--TT-T-----A---T--ATATATA-A-TTGTTTTTCTTGTATTTTTT-CGGC-GA 1233
Query 1289 TTGTATTTAAAAAGTTTCTTAATGTTTGAGAAAAACAAGAATAAAGCCATTTTTTAAACT 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TTGTATTTAAAAAGTTTCTTAATGTTTGAGAAAAACAAGAATAAAGCCATTTTTTAAACT 1293
Query 1349 GTTAATTGTATTTTAATGTAAAAGACTTGTTTGATTGAATAAAAGGAAAGAGAAGTTGG 1407
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1294 GTTAATTGTATTTAAATGTAAAAGACTTGTTTGATTGAATAAAAGGAAAGAAAAGTTGG 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5