BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25040.1
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492333 jgi|Araly1|492333|fgenesh2_kg.7__1766__AT4G25040.1 1160 0.0
> Ahg492333 jgi|Araly1|492333|fgenesh2_kg.7__1766__AT4G25040.1
Length=725
Score = 1160 bits (628), Expect = 0.0
Identities = 696/728 (96%), Gaps = 7/728 (1%)
Strand=Plus/Plus
Query 4 CCCACTTCTTTTCTCTTTCTCTTGTCTTCGTGGAGTTTTCGG-ATCTTACACAACAATAT 62
||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1 CCCACTTCTTTCCTCTTTCTCTTGTCTCCGTGGAGTTTT-GGAATCTTACACAACAATAT 59
Query 63 CTTTGTC-TTACTGTATTTCTT-GTCCTTTTTCTTCTTACCTTTCTAACAATTATTAAGA 120
||||||| |||||| |||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 60 CTTTGTCTTTACTGCATTT-TTGGTCCTTTGTCTTCTTACCTTTCTAACAATTATTAAGA 118
Query 121 AGAGTAAAGCTTGAATTTAAATAAAAATGATGGGAGACAATGAAGGAAGAAGAACTCCGT 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 AAAGTAAAGCTTGAATTTAAATAAAAATGATGGGAGACAATGAAGGAAGAAGAACGCCGC 178
Query 181 TATTGAATCTTGGGGTTCAAGTATCGATGAGAGTGTTAACCATCGGAGCTGCAATGGCCT 240
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 179 TATTGAATCTTGGGGTTCAAGTGTCGATGAGAGTGTTAATCATCGGAGCTGCAATGGCCT 238
Query 241 CGATGTGGGTCATGATCACTAACCGTGAAGTCGCATCTGTTTATGGCATCGCTTTTGAGG 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 CGATGTGGGTCATGATCACTAACCGTGAAGTCGCCTCTGTTTATGGCATCGCTTTTGAGG 298
Query 301 CTAAATACAGCTACTCCTCTGCCTTTAGGTATTTGGTGTACGCACAGATAGCTGTCTGCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTAAATACAGCTACTCCTCTGCCTTTAGGTATTTGGTGTACGCACAGATAGCTGTCTGCG 358
Query 361 CCGCGACATTGTTTACGCTTG-TATGGGCTTGTTTGGCAGTCCGCAGAAGAGGACTTGTT 419
|||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 359 CCGCGACATTGTTTAC-CTTGGTATGGGCTTGTTTAGCAGTCCGCAGAAGAGGACTTGTT 417
Query 420 TTTGCACTCTTCTTCTTTGATTTGCTTACGACTTTGACGGCGATATCAGCTTTCTCTGCT 479
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 TTTGCACTCTTCTTCTTTGATTTGCTTACGACTTTGACGGCGATATCTGCTTTCTCTGCG 477
Query 480 GCCTTCGCGGAAGGTTACGTAGGGAAGTACGGTAACAAACAGGCCGGTTGGCTTCCGATC 539
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 478 GCCTTCGCGGAAGGTTACGTTGGGAAGTACGGTAACAAACAAGCCGGTTGGCTTCCGATC 537
Query 540 TGCGGTTATGTGCATGGTTATTGCAGTCGTGTCACTATCTCCCTCGCTATGTCCTTCGCC 599
|||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 538 TGCGGTTATGTGCATGTTTATTGCAGTCGTGTCACCATCTCACTCGCTATGTCCTTCGCC 597
Query 600 TCTTTTATCCTCTTGTTCATCCTTACGGTCTTAACTGCCTCCGCTGCTCGTCATTACTGA 659
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 TCTTTTGTCCTCTTGTTCATCCTTACGGTCTTAACTGCCTCCTCTGCTCGTCATTACTGA 657
Query 660 TTTTCTTACATTTTATATCATACAATTCAATTCCTTCTACTCCAAGATAATTCAGTCTTT 719
||||||||||||| ||||||||| || ||||||||||||||| ||||| |||||||||||
Sbjct 658 TTTTCTTACATTTAATATCATACTATACAATTCCTTCTACTCTAAGATCATTCAGTCTTT 717
Query 720 GTTATATA 727
||||||||
Sbjct 718 GTTATATA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5