BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25050.2

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945589 jgi|Araly1|945589|scaffold_701818.1                        442    2e-123


> Ahg945589 jgi|Araly1|945589|scaffold_701818.1
Length=465

 Score =  442 bits (239),  Expect = 2e-123
 Identities = 284/305 (93%), Gaps = 5/305 (2%)
 Strand=Plus/Plus

Query  141  CTGAGTTGTGTATTGAGCTTCATCTCCTTCAAATGGCTTCCTTATCAACCACTTCCCTAA  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1    CTGAGTTGTGTATTGAGCTTCATCTCCTTCAAATGGCTTCCTTATCAACCACTTCTCTAA  60

Query  201  GCTTCAAAGCTCCGTCCACCACAATTTCACAGGTTTTAAGGAAAGCCTCAAGTTCTCAGT  260
            ||||||||||||||||||| | |||||| ||||| ||||||||||||||||||| |||||
Sbjct  61   GCTTCAAAGCTCCGTCCACAAGAATTTCTCAGGTGTTAAGGAAAGCCTCAAGTTTTCAGT  120

Query  261  CTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTG  320
            ||||||||||||||||| |||||||||||| |  |||||| |||||||||||||||||||
Sbjct  121  CTGTGACCTTTGGTCGTGTCACGTCTTCAA-A--GAGCCTACGTCTTCAAATCAGTTGTG  177

Query  321  CCGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTGGCTTTAG  380
            | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  178  CAGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAACAACAATTGGCTTT-G  236

Query  381  -CTGCTGATGTTCCGCTCACTGCTGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTC  439
             | |||||   |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  237  TCCGCTGACACTCCGATCACTGCCGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTC  296

Query  440  GACAC  444
            |||||
Sbjct  297  GACAC  301


 Score =  241 bits (130),  Expect = 8e-63
 Identities = 150/160 (94%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  481  TGTGGAGATAGTGATGGCGTTGGAGGAAAAGTTTAACATAAGTGTGGAGGAATCTGATGC  540
            ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  302  TGTGGAGATAGTGATGGAGTTGGAGGAAAAGTTTAACATTAGTGTGGAGGAATCTGATGC  361

Query  541  TCAAAACATTACGACCATCCAAGAGGCGGCTGATTTGATAGAGGACCTTGTTCAAAAGAA  600
            |||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct  362  TCAAAACATTACAACGATCCAAGAGGCTGCTGATTTGATAGAGGAACTTGTTCAGAAGAA  421

Query  601  ACCCGCGGCGGAAACTTCCTGAACCGGCTGTCTTTTCTTT  640
            |||||| |||||||||||||||||||||| |||||| |||
Sbjct  422  ACCCGCTGCGGAAACTTCCTGAACCGGCTATCTTTTTTTT  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33891273213


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5