BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25090.1 Length=2705 Score E Sequences producing significant alignments: (Bits) Value Ahg492327 jgi|Araly1|492327|fgenesh2_kg.7__1760__AT4G25090.1 3906 0.0 Ahg916132 jgi|Araly1|916132|Al_scaffold_0008_883 1138 0.0 Ahg887625 jgi|Araly1|887625|Al_scaffold_0027_1 656 0.0 > Ahg492327 jgi|Araly1|492327|fgenesh2_kg.7__1760__AT4G25090.1 Length=2703 Score = 3906 bits (2115), Expect = 0.0 Identities = 2529/2721 (93%), Gaps = 59/2721 (2%) Strand=Plus/Plus Query 1 ATGCAGAGAGTGAGCTTTGAAGTAAAGGACACAGAGGCGGAGAAGAGCAGCAGCGAG--A 58 ||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||| | Sbjct 1 ATGCAGAGAGTTAGCTTTGAAGTGACGGATACAGAGGCGGAGAAGAGCAGCAGCGAGACA 60 Query 59 --T--ACT-----GAG-CGGATCTTTGCCGTCGACCTACCGAAATCCGGCGATGGAAAAC 108 | ||| ||| |||| ||||||||||||||| | ||||||||||||||||||| Sbjct 61 GTTCCACTGAGCGGAGCCGGAGCTTTGCCGTCGACCTTCAAAAATCCGGCGATGGAAAAC 120 Query 109 GTTGGAAACGCGGTGGATGATGGATCGAGCGTGAAGAACAATCCGAAACTTG-ATATGCA 167 ||||||||||||| |||||||||| |||||||||||||||||||||||| || || ||| Sbjct 121 GTTGGAAACGCGGCGGATGATGGACCGAGCGTGAAGAACAATCCGAAAC-TGAATGCGCA 179 Query 168 GAAACAGAACGGTTTGGTGAA---G-T-G-----G--T-T---CA----A-GAAGTGCTT 206 ||||||||||||| ||||||| | | | | | | || | |||||| || Sbjct 180 GAAACAGAACGGTCTGGTGAAGTTGCTCGCCTCAGTTTCTAACCAGCTCATGAAGTGTTT 239 Query 207 GACAATGGT-ATCTGGAGAGAGTAAGGCACCTCGATTGGACCGGTCGAAGTCAACGGCCG 265 |||| |||| | || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 240 GACATTGGTCA-CTAGAGAGAGTAAGACACCTCGATTGGACCGGTCGAAGTCAACGGCCG 298 Query 266 GTCAGGCCTTGAAAGGGCTCAAGATCATCAGTAAGACCGACGGTAACGCTGCCTGGACCG 325 ||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| | Sbjct 299 GTCAGGCCTTGAAAGGGCTCAAGCTCATTAGTAAGACCGACGGCAACGCTGCCTGGACGG 358 Query 326 TCGTGGAGAAGCGGTACTTGAAGATCACGGCCAATACTGATGGATTGCTGCTTCGGTCGA 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 359 TCGTGGAGAAGCGGTACTTGAAGATCACGGCCAATACTGATGGATTGCTGCTTCGGTCAA 418 Query 386 AATTCGGTGAATGCATAGGGATGAACTCAAAAGAATTTGCCTTGGAATTGTTTGACGCCT 445 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 419 AATTCGGTGAATGCATAGGGATGAACTCAAAAGAATTTGCCTTGGAATTGTTCGACGCAT 478 Query 446 TAGCTAGAAAAAGTCACTTGAAAGGGGATGTGATTACTGAGACCGAGTTGAAGAAATTTT 505 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TAGCTAGAAAAAGTCACCTGAAAGGGGATGTGATTACTGAGACCGAGTTGAAGAAATTTT 538 Query 506 GGGAACAAATAAATGATAAAAGCTTTGATTCAAGGCTTATCACGTTCTTTGACTTGATGG 565 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 539 GGGAACAAATAAATGATAAAAGCTTTGATTCCAGGCTTATCACGTTCTTTGACTTGATGG 598 Query 566 ATAAAGACTCGGATGGTAGACTTACGGAAGACGAAGTTAGAGAGATCATCAAGCTTAGTT 625 |||||||| | ||||||||||| || ||||| |||||||||||||||||||| ||||||| Sbjct 599 ATAAAGACGCCGATGGTAGACTAACCGAAGATGAAGTTAGAGAGATCATCAATCTTAGTT 658 Query 626 CTTCTGCCAATCATCTGTCATGCATCCA-AAACAAGGCAGATGAATATGCAGCAATGATA 684 | |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 659 CGTCTGCCAACCATCTGTCATGCATCCAGAAA-AAGGCAGATGAATATGCAGCAATGATA 717 Query 685 ATGGAAGAGCTTGACCCTGATCATATGGGATACATCATGATGGAGAGTCTAAAGAAATTG 744 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 718 ATGGAAGAGCTTGACCCTGATCATATGGGATACATCATGATGGAGAGTCTTAAGAAATTG 777 Query 745 CTTCTGCAAGCGGAAACAAAATCTGTAAGCACAGATATTAATAGTGAAGAAAGAAAGGAG 804 |||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||| Sbjct 778 CTTCTGCAAGCGGAAACAAAATCTTTAAGCACA-AC-T-AATAGTGAAGAAAGAAAGGAG 834 Query 805 CTGAGCGACATGCTAACTGAGAGTCTCAAGCCTACACGTGACCCTAACCATTTGAGGAGA 864 |||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct 835 CTGAGCGATATGCTAAGTGAGAGTCTTAAGCCTACGCGTGACCCTAACCATTTGAGGAGA 894 Query 865 TGGTATTGTCAACTAAGATTCTTTGTATTGGATAGTTGGCAAAGAGTTTGGGTGATAGCG 924 ||||| |||||||||||||||| ||| ||||||| ||||||||| |||||||||||||| Sbjct 895 TGGTACCGTCAACTAAGATTCTTCGTACTGGATAGCTGGCAAAGAATTTGGGTGATAGCG 954 Query 925 TTATGGCTCACGATTATGGCCATCCTCTTCGCGTACAAGTATATTCAATACAAGAATAGA 984 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 955 TTATGGCTCGCGATTATGGCCATCCTCTTCGCGTACAAATATATTCAATACAAGAATAGA 1014 Query 985 GCAGTGTATGAAGTGTTGGGGCCTTGTGTGTGCTTGGCTAAAGGTGCAGCAGAGACGCTG 1044 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1015 GCAGTGTATGAAGTCTTGGGGCCTTGTGTGTGCTTGGCTAAAGGTGCAGCAGAGACGTTG 1074 Query 1045 AAGCTAAACATGGCCCTAATTCTGTTACCTGTTTGCAGAAATACCATCACATGGCTTAGA 1104 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1075 AAGCTAAACATGGCCTTAATTCTGTTACCTGTATGCAGAAATACCATCACATGGCTTAGA 1134 Query 1105 AATAAGACTAG--G-TTGGGTGTTTTTGTTCCTTTTGATGACAACCTCAATTTTCACAAG 1161 ||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1135 AATAAGACTAGCTGGTTGGGTGTTTTTGTCCCTTTTGATGACAACCTCAATTTTCATAAG 1194 Query 1162 GTTATAGCGGTGGGAATTGCGATAGGAGTAGCCATACACTCTGTGTCCCACTTGGCGTGT 1221 |||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| ||| Sbjct 1195 GTTATAGCGGTGGGAATTACGATAGGAGTAGGCATACACTCGGTGGCCCACTTGGCATGT 1254 Query 1222 GATTTTCCACTGCTAATCGCGGCAACTCCAGCGGAATACATGCCTCTCG-GAAAATTCTT 1280 |||||||||| ||||||||| |||||||||||| ||||||||||||||| |||| ||||| Sbjct 1255 GATTTTCCACGGCTAATCGCAGCAACTCCAGCGCAATACATGCCTCTCGAGAAA-TTCTT 1313 Query 1281 CGGAGAGGAGCAACCAAAGAGATACTTGCATTTTGTGAAGTCAACAGAAGGAATAACAGG 1340 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1314 CGGGGAGGAGCAACCAAAGAGGTACTTGCATTTTGTGAAGTCAACAGAAGGAATAACAGG 1373 Query 1341 GCTTGTAATGGTTTTCTTGATGGTTATTGCTTTTACACTGGCTATGCCTTGGTTTAGACG 1400 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 GCTTGTAATGGTCCTCTTGATGGTTATTGCTTTTACACTGGCTATGCCTTGGTTTAGACG 1433 Query 1401 GGGGAAGCTAGAGAAAAAGCTACCAGGGCCACTAAAGAAACTTGCGAGCTTCAATGCCTT 1460 ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 1434 AGGGAAGCTAGAAAAAAAGCTTCCAGGGCCACTAAAGAAACTCGCGAGCTTCAACGCCTT 1493 Query 1461 CTGGTACACTCACCATTTGTTCGTTATAGTCTACATTCTCCTTGTCCTTCACGGATACTA 1520 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1494 CTGGTACACTCACCATTTGTTTGTTATAGTCTACATTCTACTTGTCCTTCACGGATACTA 1553 Query 1521 CATATATCTCAACAAGGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGT 1580 | | || |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1554 CTTGTACCTCAGTAAGGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGT 1613 Query 1581 AGCTCTTTATGCATACGAGAGATTGATACGAGCATTCAGGTCCAGCATCAGGACAGTAAA 1640 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1614 AGCTCTCTATGCATACGAGAGATTGATACGAGCATTCAGGTCCAGCATCAGGACTGTAAA 1673 Query 1641 AGTCCTTAAGATGGCAGCTTATCCTGGAAAAGTATTGACTTTGCAGATGTCAAAGCCTAC 1700 ||| |||||| | || |||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1674 AGTTCTTAAGGTCGCGGCTTATCCGGGAAAAGTATTGACTTTGCAAATGTCAAAGCCTAC 1733 Query 1701 AAACTTCAAATACATGAGCGGCCAATACATGTTTGTAAATTGTCCAGCAGTTTCACCGTT 1760 |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1734 AAACTTCAAATACAAGAGCGGTCAATACATGTTTGTAAATTGTCCAGCAGTCTCACCGTT 1793 Query 1761 TGAGTGGCATCCATTTTCAATAACTTCTACACCACAAGACGACTATCTGAGCGTTCATAT 1820 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1794 TGAGTGGCATCCATTTTCAATAACTTCAACACCACAAGAAGACTATCTGAGCGTTCATAT 1853 Query 1821 AAAAGCATTGGGAGATTGGACAGAGGCTATCCAAGGAGTTTTCTCAGAGGTGTCTAAGCC 1880 |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1854 AAAATCACTGGGAGATTGGACAGAGGCTATCCAAGGAGTTTTCTCCGAGGTGTCTAAGCC 1913 Query 1881 ACCTCCGGTCGGAGACATGTTGAATGGTGCAAATAGTCCCCGTTTCCCCAAAATTATGAT 1940 |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| Sbjct 1914 ACCTCCGGTCGGAGACATGTTGCATGGTGCAAATAGTCCCGGTTTTCCCAAAATTATGAT 1973 Query 1941 TGATGGTCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTACGAGGTGGTCCTGCTGAT 2000 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1974 TGATGGTCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTACGAGGTGGTTCTGCTGAT 2033 Query 2001 AGGTCTTGGCATTGGAGCCACCCCGATGATCAGCATTATCAAGGACATTATTAACAATAC 2060 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2034 CGGTCTTGGCATTGGAGCCACCCCGATGATCAGCATTATCAAGGACATTATCAACAATAC 2093 Query 2061 GGAGACCAAGGAACAACTCAGCCAAATGGAGAAGGGATCGCCACAAGAGCAACAAGGTAA 2120 |||||||||||| || |||||||||||||||||||| | ||||| |||||||||| ||| Sbjct 2094 GGAGACCAAGGAGCAGCTCAGCCAAATGGAGAAGGGGGCTCCACAGGAGCAACAAGTTAA 2153 Query 2121 TAAAGAAACTTTCAAGACTCGAAGGGCTTACTTCTACTGGGTAACAAAGGAGCAGGGCAC 2180 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 2154 GAAAGAAACTTTCAAGACGCGAAGGGCTTACTTCTACTGGGTAACAAAGGAGCAGGGTAC 2213 Query 2181 ATTTGATTGGTTCAAGAACATCATGAACGAGATCGCAGAACGGGACAAAAGTAAAGTCAT 2240 ||||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||||| Sbjct 2214 ATTTGATTGGTTCAAGAACGTCATGAACGAGATTGCAGAACGAGACAAAAGCAAAGTCAT 2273 Query 2241 AGAACTACACAATCATTGCACTAGTGTCTACGAAGAAGGAGACGTTCGTTCCGCGCTCAT 2300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2274 AGAACTACACAATCATTGCACTAGTGTCTACGAAGAAGGAGACGTTCGTTCCGCACTCAT 2333 Query 2301 ACGGATGCTTCAGTCTCTTAATTATGCCAAGAATGGTTTAGACATTGTTGCTGGGACAAG 2360 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2334 ACGGATGCTTCAGTCTCTAAATTATGCCAAGAATGGTTTAGACATTGTTGCTGGGACAAG 2393 Query 2361 GGTCATGTCCCATTTCGCCCGACCTAATTGGAAAAACGTCTACAAACAGATAGCCATGGA 2420 ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| Sbjct 2394 GGTCATGTCCCATTTCGCCAGACCTAATTGGAAAAACGTTTACAAACAGATTGCCATGGA 2453 Query 2421 TCACCCTGGCGCTAATGTTGGAGTGTTCTATTGTGGAGCACCGGTATTGACGAAGGAGTT 2480 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2454 TCACCCTGGTGCTAATGTTGGAGTGTTCTATTGTGGAGCACCGGTATTGACGAAGGAGTT 2513 Query 2481 AAGGCAAT-TAGCTTTGGAATTCACACACAAGACCAGTACTAGATTCTCTTTCCACAAAG 2539 |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2514 AAGGCA-TCTAGCTTTGGAATTCACACACAAGACAAGTACTAGATTCTCTTTCCACAAAG 2572 Query 2540 AGAACTTCTAAAGACATTGAAGCTTATAGCTTTATACCCACAAAAATGCTGATAGACTTC 2599 |||||||||||||||| ||||||||| | | |||||| |||||||||||| | Sbjct 2573 AGAACTTCTAAAGACAGTGAAGCTTA---C---A--CCCACATTAATGCTGATAGAGTA- 2623 Query 2600 TGATGGTCAACAAATTAATGAAATTTGTGGGAGTAAGTATGTTACATTTGTGTTTTGAAA 2659 || ||| |||||||||| |||||||||||| ||||||| |||||| |||||||||||||| Sbjct 2624 TGCTGGCCAACAAATTATTGAAATTTGTGG-AGTAAGTGTGTTACGTTTGTGTTTTGAAA 2682 Query 2660 ATTAAATTTTGGTGTTATTTT 2680 |||||||||||||||| |||| Sbjct 2683 ATTAAATTTTGGTGTTGTTTT 2703 > Ahg916132 jgi|Araly1|916132|Al_scaffold_0008_883 Length=1893 Score = 1138 bits (616), Expect = 0.0 Identities = 902/1037 (87%), Gaps = 32/1037 (3%) Strand=Plus/Plus Query 1533 CAAGGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGTAGCTCTT-TATG 1591 ||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 870 CAAAGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGTAGCT-TTCTATG 928 Query 1592 CATACGAGAGATTGATACGAGCATTCAGGTCCAGCATC-AGGACAGTAAAAGTCCTTAAG 1650 ||| |||||||| ||||||||||| ||||||| || || || |||||||| ||||| Sbjct 929 CATGTGAGAGATTAATACGAGCATTTAGGTCCAAAATGGAG-ACGGTAAAAGTTATTAAG 987 Query 1651 A-TG-GCAGCTTATCCTGGAAAAGTATTGACTTTGCAGATGTCAAAGCCTACAAACTTCA 1708 || | | ||||||||||||| |||||||| ||||| ||||||| ||||||||||||| Sbjct 988 GCTGCG-A-CTTATCCTGGAAACGTATTGACATTGCACATGTCAAGGCCTACAAACTTCG 1045 Query 1709 AATACATGAGCGGCCAATACATGTTTGTAAATTGTCCAGCAGTTTCACCGTTTGAGTGGC 1768 |||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1046 AATACAAGAGCGGTCAATACATGTTTGTAAACTGTCCAGCAGTCTCACCGTTTGAGTGGC 1105 Query 1769 ATCCATTTTCAATAACTTCTACACCACAAGACGACTATCTGAGCGTTCATATAAAAGCA- 1827 |||||||||||||||||||| ||||||| ||||| ||| | || |||||||||||| || Sbjct 1106 ATCCATTTTCAATAACTTCTGCACCACATGACGAGTATTTAAGTGTTCATATAAAATCAC 1165 Query 1828 TTGGGAGATTGGACAGAGGCTATCCAAGGAGTTTTCTCAGAGGTGTCTAAGCCACCTCCG 1887 |||| |||||||||| |||||||| ||||||||||||| ||||| |||| ||||| |||| Sbjct 1166 TTGG-AGATTGGACAAAGGCTATCAAAGGAGTTTTCTCCGAGGTATCTATGCCACTTCCG 1224 Query 1888 GTCGGAGACATGTTGAATGGTGCAAATAGTCCCCG-TTTCCCCAAAATTATGATTGATGG 1946 |||||||| |||| | |||||||||||| | || | |||||| | ||||||||||||||| Sbjct 1225 GTCGGAGAGATGTCGCATGGTGCAAATAATTCC-GATTTCCCGAGAATTATGATTGATGG 1283 Query 1947 TCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTACGAGGTGGTCCTGCTGATAGGTCT 2006 |||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || || Sbjct 1284 TCCGTACGGCGCACCAGCACAAGACTACAAGAAATACGAGGTGGTTCTGCTGATCGGCCT 1343 Query 2007 TGGCATTGGAGCCACCCCGATGATCAGCATTATCAAGGACATTATTAACAATACGGAGAC 2066 ||| |||||||||||||| ||||| || ||||| |||||||| || || ||||||||||| Sbjct 1344 TGGGATTGGAGCCACCCCAATGATAAGTATTATTAAGGACATAATCAATAATACGGAGAC 1403 Query 2067 CAAGGAACAA-CTCA-GCCAAA-T-GGAGAAGG-G--ATCGCCACAAGAGCAACAAGGT- 2118 ||| |||| |||| | | | || ||||| | ||| | ||| |||| ||||||| Sbjct 1404 CAAAGAACTTTCTCAAGTTGACCTAGG-GAAGGTGGGATCACAACATGAGCCACAAGGTG 1462 Query 2119 AATAAAGAAACTTTCAAGACTCGAAGGGCTTACTTCTACTGGGTAACAAAGGAGCAGGGC 2178 || ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| Sbjct 1463 AA-AAAGAAACTTTCAAGACGCGAAGGGCTTACTTCTACTGGGTAACAAGGGAGCAAGGC 1521 Query 2179 ACATTTGATTGGTTCAAGAACATCATGAACGAGATCGCAGAACGGGACAAAAGTAAAGTC 2238 ||| |||||||||||||||||||||||||||||| || || |||||||||| ||||||| Sbjct 1522 TCATATGATTGGTTCAAGAACATCATGAACGAGATTGCTGAGCGGGACAAAAATAAAGTC 1581 Query 2239 ATAGAACTACACAA-TCATTGCACTAGTGTCTACGAAGAAGGAGACGTTCGTTCCGCGCT 2297 |||||||||||||| | |||||||||| ||||| |||||||||||||||||||| ||| | Sbjct 1582 ATAGAACTACACAACT-ATTGCACTAGCGTCTATGAAGAAGGAGACGTTCGTTCAGCGTT 1640 Query 2298 CATACGGATGCTTCAGTCTCTTAATTATGCCAAGAATGGTTTAGACATTGT-TGCTGGGA 2356 ||||| |||||||||||||| || ||||||||| ||||||||||||||| | |||||| Sbjct 1641 CATACATATGCTTCAGTCTCTAAACCATGCCAAGAGTGGTTTAGACATTGTCT-CTGGGA 1699 Query 2357 C-AAGGGTCATGTCCCA-TTTCGCCCGACCTAATTGGAAAAACGTCTACAAACAGATAGC 2414 | |||| | |||||| | ||| ||| |||||||||| ||||| | |||||||||||||| Sbjct 1700 CCAAGGTT-ATGTCCTACTTT-GCCAAACCTAATTGGGAAAACATTTACAAACAGATAGC 1757 Query 2415 CATGGATCACCCTGGCGCTAATGTTGGAGTGTTCTATTGTGGAGCACCGGTATTGACGAA 2474 |||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||| || Sbjct 1758 CATGGATCACCCTGGCTCTAATGTTGGAGTGTTTTATTGTGGAGCCCCGGCATTGACAAA 1817 Query 2475 GGAGTTAAGGCAATT-AGCTTTGGAATTCACACACAAGACCAGTACTAGATTCTCTTTCC 2533 |||||||||| |||| ||||||||||||| |||| ||||| || ||||||||||| |||| Sbjct 1818 GGAGTTAAGG-AATTTAGCTTTGGAATTCGCACATAAGACAAGAACTAGATTCTCCTTCC 1876 Query 2534 ACAAAGAGAACTTCTAA 2550 ||||||| ||||| ||| Sbjct 1877 ACAAAGAAAACTTTTAA 1893 Score = 926 bits (501), Expect = 0.0 Identities = 746/863 (86%), Gaps = 22/863 (3%) Strand=Plus/Plus Query 609 GATCATCAAG-CTTAGTTCTTCTGCCAATCATCTGTCATGCATCCAAA-AC-AAGGCAGA 665 |||||| || |||||||| |||||||| ||||| ||| ||| ||| || || ||||| Sbjct 21 GATCAT-TAGTCTTAGTTCGTCTGCCAACCATCTTTCAACCAT--AAAGACAAATGCAGA 77 Query 666 TGAATATGCAGCAATGATAATGGAAGAGCTTGACCCTGATCATATGGGATACATCATGAT 725 || ||||||||||||||||||| ||| ||||||| ||| |||| |||||||||||||| Sbjct 78 TGGATATGCAGCAATGATAATGAAAGTGCTTGACAAAGATAATATTGGATACATCATGAT 137 Query 726 GGAG-AGTC-TAAAGAAATTGCTTCTGCAAGCGGAAACAAAATCTGTAAGCACAGATATT 783 || | |||| |||| ||||||||| |||| |||||| | || | ||||| | Sbjct 138 GG-GTAGTCTTAAA-TCCTTGCTTCTGGAAGCTGAAACACATTCCATCAGCAC----A-- 189 Query 784 AATAGTGAAGAAAGAAAGGAGCTGAGCGACATGCTAACTGA-GAGTCTCAAGCCTACACG 842 || ||||||||||||||| || || |||||||| ||| | | || || |||||||||| Sbjct 190 AACAGTGAAGAAAGAAAGAAGTTGGGCGACATGATAAGTAACAAG-CTTAAGCCTACACT 248 Query 843 TGACCCTAACCATTTGAGGAGATGGTATTGTCAACTAAGATTCTTTGTATTGGATAGTTG 902 ||||||||||| |||| ||||||||| | |||| |||||||| ||| |||||| || Sbjct 249 TGACCCTAACCCGTTGAAGAGATGGTACCATAAACTTAGATTCTTCGTACTGGATAACTG 308 Query 903 GCAAAGAGTTTGGGTGATAGCGTTATGGCTCACGATTATGGCCATCCTCTTCGCGTACAA 962 ||||||| ||||||| |||| | ||||||||| ||||||||||||||||||| ||||| Sbjct 309 GCAAAGAATTTGGGTAATAGTGCTATGGCTCATGATTATGGCCATCCTCTTCATATACAA 368 Query 963 GTATATTCAATACAAGAATAGAGCAGTGTATGAAGTGTTGGGGCCTTGTGTGTGCTTGGC 1022 |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 369 ATATATTCAATACAAGAATAGAGAAGTGTATGAAGTGTTGGGGCATTGTGTGTGCTTGGC 428 Query 1023 TAAAGGTGCAGCAGAGACGCTGAAGCTAAACATGGCCCTAATTCTGTTACCTGTTTGCAG 1082 |||||||||||| ||||| |||||||| ||||||||| | |||||||||||||| ||||| Sbjct 429 TAAAGGTGCAGCTGAGACACTGAAGCTGAACATGGCCTTGATTCTGTTACCTGTATGCAG 488 Query 1083 AAATACCATCACATGGCTTAGAAATAAGACTAGGTTGGGTGTTTTTGTTCCTTTTGATGA 1142 ||||||||| ||||||||||||| ||| ||||| ||||||||| |||| ||||||||||| Sbjct 489 AAATACCATTACATGGCTTAGAACTAAAACTAGTTTGGGTGTTATTGTCCCTTTTGATGA 548 Query 1143 CAACCTCAATTTTCA-CAAGGTTATAGCGGTGGGAATTGCGATAGGAGTAGCCATACACT 1201 ||||||||| ||||| | ||||||||||||||||||| |||||||||||||||||||| Sbjct 549 CAACCTCAACTTTCATC-AGGTTATAGCGGTGGGAATCATGATAGGAGTAGCCATACACT 607 Query 1202 CTGTGTCCCACTTGGCGTGTGATTTTCCACTGCTAATCGCGGCAACTCCAGCGGAATACA 1261 | ||| ||||||||||||| |||||||||| |||||| ||||||||||||| |||||||| Sbjct 608 CGGTGACCCACTTGGCGTGCGATTTTCCACGGCTAATTGCGGCAACTCCAGAGGAATACA 667 Query 1262 TGCCTCT-CGGAAAATTCTTCGGAGAGGAGCAACCAAAGAGATACTTGCATTTTGTGAAG 1320 ||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 668 TGCCTCTAC-GAAAATTCTTTGGAGAAGAGCAACCAAAGAGATACTTGCATTTTGTGAAG 726 Query 1321 TCAACAGAAGGAATAACAGGGCTTGTAATGGTTTTCTTGATGGTTATTGCTTTTACACTG 1380 ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 727 TCAACAGAAGGAATAACAGGGCTCATAATGGTTTTCTTGATGGCAATTGCTTTTACACTA 786 Query 1381 GCTATGCCTTGGTTTAGACGGGGGAAGCTAGAGAAAAAGCTACCAGGGCCACTAAAGAAA 1440 ||||| |||||||||||||| |||||||| || |||||||| |||| ||||||||||||| Sbjct 787 GCTATCCCTTGGTTTAGACGAGGGAAGCTCGAAAAAAAGCTTCCAGAGCCACTAAAGAAA 846 Query 1441 CTTGCGAGCTTCAATGCCTTCTG 1463 || || ||||||||||||||||| Sbjct 847 CTAGCTAGCTTCAATGCCTTCTG 869 > Ahg887625 jgi|Araly1|887625|Al_scaffold_0027_1 Length=1554 Score = 656 bits (355), Expect = 0.0 Identities = 549/640 (86%), Gaps = 23/640 (4%) Strand=Plus/Plus Query 1924 TTCCCCAAAATTATGATTGATGGTCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTAC 1983 ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 925 TTCCCGAGAATTATGATTGATGGTCCGTACGGCGCACCAGCACAAGACTACAAGAAATAC 984 Query 1984 GAGGTGGTCCTGCTGATAGGTCTTGGCATTGGAGCCACCCCGATGATCAGCATTATCAAG 2043 |||||||| |||||||| || ||||| |||||||||||||| ||||| || ||||| ||| Sbjct 985 GAGGTGGTTCTGCTGATCGGCCTTGGGATTGGAGCCACCCCAATGATAAGTATTATTAAG 1044 Query 2044 GACATTATTAACAATACGGAGACCAAGGAAC-AACTC-A---G-CCAAATGGAGAAGGGA 2097 ||||| || || |||||||||||||| |||| ||| | | || | | || |||| Sbjct 1045 GACATAATCAATAATACGGAGACCAAAGAACTTGCTCAACTTGACCTAGCGAAGGTGGGA 1104 Query 2098 TCGCCACAAGAGCAACAAGGT-AATAAAGAAACTTTCAAGACT-CGAAGGGCTTACTTCT 2155 || | ||| |||| |||| || || |||||||||||||||| | |||||||||||||||| Sbjct 1105 TCACAACATGAGCCACAAAGTGAA-AAAGAAACTTTCAAGA-TGCGAAGGGCTTACTTCT 1162 Query 2156 ACTGGGTAACAAAGGAGCAGGGCACATTTGATTGGTTCAAGAACATCATGAACGAGATCG 2215 | |||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||| | Sbjct 1163 ATTGGGTAACAAGGGAGCAAGGCTCATATGATTGGTTCAAGAACATCATGAACGAGATTG 1222 Query 2216 CAGAACGGGACAAAAGTAAAGTCATAGAACTACACAA-TCATTGCACTAGTGTCTACGAA 2274 | || |||||||||| |||||||||||||||||||| | |||||||||| ||||| ||| Sbjct 1223 CTGAGCGGGACAAAAACAAAGTCATAGAACTACACAACT-ATTGCACTAGCGTCTATGAA 1281 Query 2275 GAAGGAGACGTTCGTTCCGCGCTCATACGGATGCTTCAGTCTCTTAATTATGCCAAGAAT 2334 ||||||||||||||||| ||| |||||| |||||||||||||| || ||||||||| | Sbjct 1282 GAAGGAGACGTTCGTTCAGCGTTCATACATATGCTTCAGTCTCTAAACCATGCCAAGAGT 1341 Query 2335 GGTTTAGACATTGT-TGCTGGGAC-AAGGGTCATGTCCCA-TTTCGCCCGACCTAATTGG 2391 |||||||||||||| | ||||||| |||| | |||||| | ||| ||| |||||||||| Sbjct 1342 GGTTTAGACATTGTCT-CTGGGACCAAGGTT-ATGTCCTACTTT-GCCAAACCTAATTGG 1398 Query 2392 AAAAACGTCTACAAACAGATAGCCATGGATCACCCTGGCGCTAATGTTGGAGTGTTCTAT 2451 ||||| | |||||||||||||||||||||||||||||| ||||||||| || || ||| Sbjct 1399 GAAAACATTTACAAACAGATAGCCATGGATCACCCTGGCTCTAATGTTGT-GT-TT-TAT 1455 Query 2452 TGTGGAGCACCGGTATTGACGAAGGAGTTAAGGCAATT-AGCTTTGGAATTCACACACAA 2510 |||||||| |||| |||||| |||||||||||| |||| ||||||||||||| |||| || Sbjct 1456 TGTGGAGCCCCGGCATTGACAAAGGAGTTAAGG-AATTTAGCTTTGGAATTCGCACATAA 1514 Query 2511 GACCAGTACTAGATTCTCTTTCCACAAAGAGAACTTCTAA 2550 ||| || ||||||||||| ||||||||||| ||||| ||| Sbjct 1515 GACAAGAACTAGATTCTCCTTCCACAAAGAAAACTTTTAA 1554 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102043766355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5