BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25090.1
Length=2705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492327 jgi|Araly1|492327|fgenesh2_kg.7__1760__AT4G25090.1 3906 0.0
Ahg916132 jgi|Araly1|916132|Al_scaffold_0008_883 1138 0.0
Ahg887625 jgi|Araly1|887625|Al_scaffold_0027_1 656 0.0
> Ahg492327 jgi|Araly1|492327|fgenesh2_kg.7__1760__AT4G25090.1
Length=2703
Score = 3906 bits (2115), Expect = 0.0
Identities = 2529/2721 (93%), Gaps = 59/2721 (2%)
Strand=Plus/Plus
Query 1 ATGCAGAGAGTGAGCTTTGAAGTAAAGGACACAGAGGCGGAGAAGAGCAGCAGCGAG--A 58
||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||| |
Sbjct 1 ATGCAGAGAGTTAGCTTTGAAGTGACGGATACAGAGGCGGAGAAGAGCAGCAGCGAGACA 60
Query 59 --T--ACT-----GAG-CGGATCTTTGCCGTCGACCTACCGAAATCCGGCGATGGAAAAC 108
| ||| ||| |||| ||||||||||||||| | |||||||||||||||||||
Sbjct 61 GTTCCACTGAGCGGAGCCGGAGCTTTGCCGTCGACCTTCAAAAATCCGGCGATGGAAAAC 120
Query 109 GTTGGAAACGCGGTGGATGATGGATCGAGCGTGAAGAACAATCCGAAACTTG-ATATGCA 167
||||||||||||| |||||||||| |||||||||||||||||||||||| || || |||
Sbjct 121 GTTGGAAACGCGGCGGATGATGGACCGAGCGTGAAGAACAATCCGAAAC-TGAATGCGCA 179
Query 168 GAAACAGAACGGTTTGGTGAA---G-T-G-----G--T-T---CA----A-GAAGTGCTT 206
||||||||||||| ||||||| | | | | | | || | |||||| ||
Sbjct 180 GAAACAGAACGGTCTGGTGAAGTTGCTCGCCTCAGTTTCTAACCAGCTCATGAAGTGTTT 239
Query 207 GACAATGGT-ATCTGGAGAGAGTAAGGCACCTCGATTGGACCGGTCGAAGTCAACGGCCG 265
|||| |||| | || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 GACATTGGTCA-CTAGAGAGAGTAAGACACCTCGATTGGACCGGTCGAAGTCAACGGCCG 298
Query 266 GTCAGGCCTTGAAAGGGCTCAAGATCATCAGTAAGACCGACGGTAACGCTGCCTGGACCG 325
||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |
Sbjct 299 GTCAGGCCTTGAAAGGGCTCAAGCTCATTAGTAAGACCGACGGCAACGCTGCCTGGACGG 358
Query 326 TCGTGGAGAAGCGGTACTTGAAGATCACGGCCAATACTGATGGATTGCTGCTTCGGTCGA 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 TCGTGGAGAAGCGGTACTTGAAGATCACGGCCAATACTGATGGATTGCTGCTTCGGTCAA 418
Query 386 AATTCGGTGAATGCATAGGGATGAACTCAAAAGAATTTGCCTTGGAATTGTTTGACGCCT 445
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 419 AATTCGGTGAATGCATAGGGATGAACTCAAAAGAATTTGCCTTGGAATTGTTCGACGCAT 478
Query 446 TAGCTAGAAAAAGTCACTTGAAAGGGGATGTGATTACTGAGACCGAGTTGAAGAAATTTT 505
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAGCTAGAAAAAGTCACCTGAAAGGGGATGTGATTACTGAGACCGAGTTGAAGAAATTTT 538
Query 506 GGGAACAAATAAATGATAAAAGCTTTGATTCAAGGCTTATCACGTTCTTTGACTTGATGG 565
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 GGGAACAAATAAATGATAAAAGCTTTGATTCCAGGCTTATCACGTTCTTTGACTTGATGG 598
Query 566 ATAAAGACTCGGATGGTAGACTTACGGAAGACGAAGTTAGAGAGATCATCAAGCTTAGTT 625
|||||||| | ||||||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 599 ATAAAGACGCCGATGGTAGACTAACCGAAGATGAAGTTAGAGAGATCATCAATCTTAGTT 658
Query 626 CTTCTGCCAATCATCTGTCATGCATCCA-AAACAAGGCAGATGAATATGCAGCAATGATA 684
| |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 659 CGTCTGCCAACCATCTGTCATGCATCCAGAAA-AAGGCAGATGAATATGCAGCAATGATA 717
Query 685 ATGGAAGAGCTTGACCCTGATCATATGGGATACATCATGATGGAGAGTCTAAAGAAATTG 744
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 ATGGAAGAGCTTGACCCTGATCATATGGGATACATCATGATGGAGAGTCTTAAGAAATTG 777
Query 745 CTTCTGCAAGCGGAAACAAAATCTGTAAGCACAGATATTAATAGTGAAGAAAGAAAGGAG 804
|||||||||||||||||||||||| |||||||| | | |||||||||||||||||||||
Sbjct 778 CTTCTGCAAGCGGAAACAAAATCTTTAAGCACA-AC-T-AATAGTGAAGAAAGAAAGGAG 834
Query 805 CTGAGCGACATGCTAACTGAGAGTCTCAAGCCTACACGTGACCCTAACCATTTGAGGAGA 864
|||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 835 CTGAGCGATATGCTAAGTGAGAGTCTTAAGCCTACGCGTGACCCTAACCATTTGAGGAGA 894
Query 865 TGGTATTGTCAACTAAGATTCTTTGTATTGGATAGTTGGCAAAGAGTTTGGGTGATAGCG 924
||||| |||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||
Sbjct 895 TGGTACCGTCAACTAAGATTCTTCGTACTGGATAGCTGGCAAAGAATTTGGGTGATAGCG 954
Query 925 TTATGGCTCACGATTATGGCCATCCTCTTCGCGTACAAGTATATTCAATACAAGAATAGA 984
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 955 TTATGGCTCGCGATTATGGCCATCCTCTTCGCGTACAAATATATTCAATACAAGAATAGA 1014
Query 985 GCAGTGTATGAAGTGTTGGGGCCTTGTGTGTGCTTGGCTAAAGGTGCAGCAGAGACGCTG 1044
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1015 GCAGTGTATGAAGTCTTGGGGCCTTGTGTGTGCTTGGCTAAAGGTGCAGCAGAGACGTTG 1074
Query 1045 AAGCTAAACATGGCCCTAATTCTGTTACCTGTTTGCAGAAATACCATCACATGGCTTAGA 1104
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1075 AAGCTAAACATGGCCTTAATTCTGTTACCTGTATGCAGAAATACCATCACATGGCTTAGA 1134
Query 1105 AATAAGACTAG--G-TTGGGTGTTTTTGTTCCTTTTGATGACAACCTCAATTTTCACAAG 1161
||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1135 AATAAGACTAGCTGGTTGGGTGTTTTTGTCCCTTTTGATGACAACCTCAATTTTCATAAG 1194
Query 1162 GTTATAGCGGTGGGAATTGCGATAGGAGTAGCCATACACTCTGTGTCCCACTTGGCGTGT 1221
|||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| |||
Sbjct 1195 GTTATAGCGGTGGGAATTACGATAGGAGTAGGCATACACTCGGTGGCCCACTTGGCATGT 1254
Query 1222 GATTTTCCACTGCTAATCGCGGCAACTCCAGCGGAATACATGCCTCTCG-GAAAATTCTT 1280
|||||||||| ||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct 1255 GATTTTCCACGGCTAATCGCAGCAACTCCAGCGCAATACATGCCTCTCGAGAAA-TTCTT 1313
Query 1281 CGGAGAGGAGCAACCAAAGAGATACTTGCATTTTGTGAAGTCAACAGAAGGAATAACAGG 1340
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CGGGGAGGAGCAACCAAAGAGGTACTTGCATTTTGTGAAGTCAACAGAAGGAATAACAGG 1373
Query 1341 GCTTGTAATGGTTTTCTTGATGGTTATTGCTTTTACACTGGCTATGCCTTGGTTTAGACG 1400
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GCTTGTAATGGTCCTCTTGATGGTTATTGCTTTTACACTGGCTATGCCTTGGTTTAGACG 1433
Query 1401 GGGGAAGCTAGAGAAAAAGCTACCAGGGCCACTAAAGAAACTTGCGAGCTTCAATGCCTT 1460
||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1434 AGGGAAGCTAGAAAAAAAGCTTCCAGGGCCACTAAAGAAACTCGCGAGCTTCAACGCCTT 1493
Query 1461 CTGGTACACTCACCATTTGTTCGTTATAGTCTACATTCTCCTTGTCCTTCACGGATACTA 1520
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1494 CTGGTACACTCACCATTTGTTTGTTATAGTCTACATTCTACTTGTCCTTCACGGATACTA 1553
Query 1521 CATATATCTCAACAAGGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGT 1580
| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CTTGTACCTCAGTAAGGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGT 1613
Query 1581 AGCTCTTTATGCATACGAGAGATTGATACGAGCATTCAGGTCCAGCATCAGGACAGTAAA 1640
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1614 AGCTCTCTATGCATACGAGAGATTGATACGAGCATTCAGGTCCAGCATCAGGACTGTAAA 1673
Query 1641 AGTCCTTAAGATGGCAGCTTATCCTGGAAAAGTATTGACTTTGCAGATGTCAAAGCCTAC 1700
||| |||||| | || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1674 AGTTCTTAAGGTCGCGGCTTATCCGGGAAAAGTATTGACTTTGCAAATGTCAAAGCCTAC 1733
Query 1701 AAACTTCAAATACATGAGCGGCCAATACATGTTTGTAAATTGTCCAGCAGTTTCACCGTT 1760
|||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1734 AAACTTCAAATACAAGAGCGGTCAATACATGTTTGTAAATTGTCCAGCAGTCTCACCGTT 1793
Query 1761 TGAGTGGCATCCATTTTCAATAACTTCTACACCACAAGACGACTATCTGAGCGTTCATAT 1820
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1794 TGAGTGGCATCCATTTTCAATAACTTCAACACCACAAGAAGACTATCTGAGCGTTCATAT 1853
Query 1821 AAAAGCATTGGGAGATTGGACAGAGGCTATCCAAGGAGTTTTCTCAGAGGTGTCTAAGCC 1880
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1854 AAAATCACTGGGAGATTGGACAGAGGCTATCCAAGGAGTTTTCTCCGAGGTGTCTAAGCC 1913
Query 1881 ACCTCCGGTCGGAGACATGTTGAATGGTGCAAATAGTCCCCGTTTCCCCAAAATTATGAT 1940
|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 1914 ACCTCCGGTCGGAGACATGTTGCATGGTGCAAATAGTCCCGGTTTTCCCAAAATTATGAT 1973
Query 1941 TGATGGTCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTACGAGGTGGTCCTGCTGAT 2000
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1974 TGATGGTCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTACGAGGTGGTTCTGCTGAT 2033
Query 2001 AGGTCTTGGCATTGGAGCCACCCCGATGATCAGCATTATCAAGGACATTATTAACAATAC 2060
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2034 CGGTCTTGGCATTGGAGCCACCCCGATGATCAGCATTATCAAGGACATTATCAACAATAC 2093
Query 2061 GGAGACCAAGGAACAACTCAGCCAAATGGAGAAGGGATCGCCACAAGAGCAACAAGGTAA 2120
|||||||||||| || |||||||||||||||||||| | ||||| |||||||||| |||
Sbjct 2094 GGAGACCAAGGAGCAGCTCAGCCAAATGGAGAAGGGGGCTCCACAGGAGCAACAAGTTAA 2153
Query 2121 TAAAGAAACTTTCAAGACTCGAAGGGCTTACTTCTACTGGGTAACAAAGGAGCAGGGCAC 2180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2154 GAAAGAAACTTTCAAGACGCGAAGGGCTTACTTCTACTGGGTAACAAAGGAGCAGGGTAC 2213
Query 2181 ATTTGATTGGTTCAAGAACATCATGAACGAGATCGCAGAACGGGACAAAAGTAAAGTCAT 2240
||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||||||
Sbjct 2214 ATTTGATTGGTTCAAGAACGTCATGAACGAGATTGCAGAACGAGACAAAAGCAAAGTCAT 2273
Query 2241 AGAACTACACAATCATTGCACTAGTGTCTACGAAGAAGGAGACGTTCGTTCCGCGCTCAT 2300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2274 AGAACTACACAATCATTGCACTAGTGTCTACGAAGAAGGAGACGTTCGTTCCGCACTCAT 2333
Query 2301 ACGGATGCTTCAGTCTCTTAATTATGCCAAGAATGGTTTAGACATTGTTGCTGGGACAAG 2360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 ACGGATGCTTCAGTCTCTAAATTATGCCAAGAATGGTTTAGACATTGTTGCTGGGACAAG 2393
Query 2361 GGTCATGTCCCATTTCGCCCGACCTAATTGGAAAAACGTCTACAAACAGATAGCCATGGA 2420
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2394 GGTCATGTCCCATTTCGCCAGACCTAATTGGAAAAACGTTTACAAACAGATTGCCATGGA 2453
Query 2421 TCACCCTGGCGCTAATGTTGGAGTGTTCTATTGTGGAGCACCGGTATTGACGAAGGAGTT 2480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 TCACCCTGGTGCTAATGTTGGAGTGTTCTATTGTGGAGCACCGGTATTGACGAAGGAGTT 2513
Query 2481 AAGGCAAT-TAGCTTTGGAATTCACACACAAGACCAGTACTAGATTCTCTTTCCACAAAG 2539
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2514 AAGGCA-TCTAGCTTTGGAATTCACACACAAGACAAGTACTAGATTCTCTTTCCACAAAG 2572
Query 2540 AGAACTTCTAAAGACATTGAAGCTTATAGCTTTATACCCACAAAAATGCTGATAGACTTC 2599
|||||||||||||||| ||||||||| | | |||||| |||||||||||| |
Sbjct 2573 AGAACTTCTAAAGACAGTGAAGCTTA---C---A--CCCACATTAATGCTGATAGAGTA- 2623
Query 2600 TGATGGTCAACAAATTAATGAAATTTGTGGGAGTAAGTATGTTACATTTGTGTTTTGAAA 2659
|| ||| |||||||||| |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 2624 TGCTGGCCAACAAATTATTGAAATTTGTGG-AGTAAGTGTGTTACGTTTGTGTTTTGAAA 2682
Query 2660 ATTAAATTTTGGTGTTATTTT 2680
|||||||||||||||| ||||
Sbjct 2683 ATTAAATTTTGGTGTTGTTTT 2703
> Ahg916132 jgi|Araly1|916132|Al_scaffold_0008_883
Length=1893
Score = 1138 bits (616), Expect = 0.0
Identities = 902/1037 (87%), Gaps = 32/1037 (3%)
Strand=Plus/Plus
Query 1533 CAAGGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGTAGCTCTT-TATG 1591
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 870 CAAAGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGTAGCT-TTCTATG 928
Query 1592 CATACGAGAGATTGATACGAGCATTCAGGTCCAGCATC-AGGACAGTAAAAGTCCTTAAG 1650
||| |||||||| ||||||||||| ||||||| || || || |||||||| |||||
Sbjct 929 CATGTGAGAGATTAATACGAGCATTTAGGTCCAAAATGGAG-ACGGTAAAAGTTATTAAG 987
Query 1651 A-TG-GCAGCTTATCCTGGAAAAGTATTGACTTTGCAGATGTCAAAGCCTACAAACTTCA 1708
|| | | ||||||||||||| |||||||| ||||| ||||||| |||||||||||||
Sbjct 988 GCTGCG-A-CTTATCCTGGAAACGTATTGACATTGCACATGTCAAGGCCTACAAACTTCG 1045
Query 1709 AATACATGAGCGGCCAATACATGTTTGTAAATTGTCCAGCAGTTTCACCGTTTGAGTGGC 1768
|||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1046 AATACAAGAGCGGTCAATACATGTTTGTAAACTGTCCAGCAGTCTCACCGTTTGAGTGGC 1105
Query 1769 ATCCATTTTCAATAACTTCTACACCACAAGACGACTATCTGAGCGTTCATATAAAAGCA- 1827
|||||||||||||||||||| ||||||| ||||| ||| | || |||||||||||| ||
Sbjct 1106 ATCCATTTTCAATAACTTCTGCACCACATGACGAGTATTTAAGTGTTCATATAAAATCAC 1165
Query 1828 TTGGGAGATTGGACAGAGGCTATCCAAGGAGTTTTCTCAGAGGTGTCTAAGCCACCTCCG 1887
|||| |||||||||| |||||||| ||||||||||||| ||||| |||| ||||| ||||
Sbjct 1166 TTGG-AGATTGGACAAAGGCTATCAAAGGAGTTTTCTCCGAGGTATCTATGCCACTTCCG 1224
Query 1888 GTCGGAGACATGTTGAATGGTGCAAATAGTCCCCG-TTTCCCCAAAATTATGATTGATGG 1946
|||||||| |||| | |||||||||||| | || | |||||| | |||||||||||||||
Sbjct 1225 GTCGGAGAGATGTCGCATGGTGCAAATAATTCC-GATTTCCCGAGAATTATGATTGATGG 1283
Query 1947 TCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTACGAGGTGGTCCTGCTGATAGGTCT 2006
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || ||
Sbjct 1284 TCCGTACGGCGCACCAGCACAAGACTACAAGAAATACGAGGTGGTTCTGCTGATCGGCCT 1343
Query 2007 TGGCATTGGAGCCACCCCGATGATCAGCATTATCAAGGACATTATTAACAATACGGAGAC 2066
||| |||||||||||||| ||||| || ||||| |||||||| || || |||||||||||
Sbjct 1344 TGGGATTGGAGCCACCCCAATGATAAGTATTATTAAGGACATAATCAATAATACGGAGAC 1403
Query 2067 CAAGGAACAA-CTCA-GCCAAA-T-GGAGAAGG-G--ATCGCCACAAGAGCAACAAGGT- 2118
||| |||| |||| | | | || ||||| | ||| | ||| |||| |||||||
Sbjct 1404 CAAAGAACTTTCTCAAGTTGACCTAGG-GAAGGTGGGATCACAACATGAGCCACAAGGTG 1462
Query 2119 AATAAAGAAACTTTCAAGACTCGAAGGGCTTACTTCTACTGGGTAACAAAGGAGCAGGGC 2178
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 1463 AA-AAAGAAACTTTCAAGACGCGAAGGGCTTACTTCTACTGGGTAACAAGGGAGCAAGGC 1521
Query 2179 ACATTTGATTGGTTCAAGAACATCATGAACGAGATCGCAGAACGGGACAAAAGTAAAGTC 2238
||| |||||||||||||||||||||||||||||| || || |||||||||| |||||||
Sbjct 1522 TCATATGATTGGTTCAAGAACATCATGAACGAGATTGCTGAGCGGGACAAAAATAAAGTC 1581
Query 2239 ATAGAACTACACAA-TCATTGCACTAGTGTCTACGAAGAAGGAGACGTTCGTTCCGCGCT 2297
|||||||||||||| | |||||||||| ||||| |||||||||||||||||||| ||| |
Sbjct 1582 ATAGAACTACACAACT-ATTGCACTAGCGTCTATGAAGAAGGAGACGTTCGTTCAGCGTT 1640
Query 2298 CATACGGATGCTTCAGTCTCTTAATTATGCCAAGAATGGTTTAGACATTGT-TGCTGGGA 2356
||||| |||||||||||||| || ||||||||| ||||||||||||||| | ||||||
Sbjct 1641 CATACATATGCTTCAGTCTCTAAACCATGCCAAGAGTGGTTTAGACATTGTCT-CTGGGA 1699
Query 2357 C-AAGGGTCATGTCCCA-TTTCGCCCGACCTAATTGGAAAAACGTCTACAAACAGATAGC 2414
| |||| | |||||| | ||| ||| |||||||||| ||||| | ||||||||||||||
Sbjct 1700 CCAAGGTT-ATGTCCTACTTT-GCCAAACCTAATTGGGAAAACATTTACAAACAGATAGC 1757
Query 2415 CATGGATCACCCTGGCGCTAATGTTGGAGTGTTCTATTGTGGAGCACCGGTATTGACGAA 2474
|||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||| ||
Sbjct 1758 CATGGATCACCCTGGCTCTAATGTTGGAGTGTTTTATTGTGGAGCCCCGGCATTGACAAA 1817
Query 2475 GGAGTTAAGGCAATT-AGCTTTGGAATTCACACACAAGACCAGTACTAGATTCTCTTTCC 2533
|||||||||| |||| ||||||||||||| |||| ||||| || ||||||||||| ||||
Sbjct 1818 GGAGTTAAGG-AATTTAGCTTTGGAATTCGCACATAAGACAAGAACTAGATTCTCCTTCC 1876
Query 2534 ACAAAGAGAACTTCTAA 2550
||||||| ||||| |||
Sbjct 1877 ACAAAGAAAACTTTTAA 1893
Score = 926 bits (501), Expect = 0.0
Identities = 746/863 (86%), Gaps = 22/863 (3%)
Strand=Plus/Plus
Query 609 GATCATCAAG-CTTAGTTCTTCTGCCAATCATCTGTCATGCATCCAAA-AC-AAGGCAGA 665
|||||| || |||||||| |||||||| ||||| ||| ||| ||| || || |||||
Sbjct 21 GATCAT-TAGTCTTAGTTCGTCTGCCAACCATCTTTCAACCAT--AAAGACAAATGCAGA 77
Query 666 TGAATATGCAGCAATGATAATGGAAGAGCTTGACCCTGATCATATGGGATACATCATGAT 725
|| ||||||||||||||||||| ||| ||||||| ||| |||| ||||||||||||||
Sbjct 78 TGGATATGCAGCAATGATAATGAAAGTGCTTGACAAAGATAATATTGGATACATCATGAT 137
Query 726 GGAG-AGTC-TAAAGAAATTGCTTCTGCAAGCGGAAACAAAATCTGTAAGCACAGATATT 783
|| | |||| |||| ||||||||| |||| |||||| | || | ||||| |
Sbjct 138 GG-GTAGTCTTAAA-TCCTTGCTTCTGGAAGCTGAAACACATTCCATCAGCAC----A-- 189
Query 784 AATAGTGAAGAAAGAAAGGAGCTGAGCGACATGCTAACTGA-GAGTCTCAAGCCTACACG 842
|| ||||||||||||||| || || |||||||| ||| | | || || ||||||||||
Sbjct 190 AACAGTGAAGAAAGAAAGAAGTTGGGCGACATGATAAGTAACAAG-CTTAAGCCTACACT 248
Query 843 TGACCCTAACCATTTGAGGAGATGGTATTGTCAACTAAGATTCTTTGTATTGGATAGTTG 902
||||||||||| |||| ||||||||| | |||| |||||||| ||| |||||| ||
Sbjct 249 TGACCCTAACCCGTTGAAGAGATGGTACCATAAACTTAGATTCTTCGTACTGGATAACTG 308
Query 903 GCAAAGAGTTTGGGTGATAGCGTTATGGCTCACGATTATGGCCATCCTCTTCGCGTACAA 962
||||||| ||||||| |||| | ||||||||| ||||||||||||||||||| |||||
Sbjct 309 GCAAAGAATTTGGGTAATAGTGCTATGGCTCATGATTATGGCCATCCTCTTCATATACAA 368
Query 963 GTATATTCAATACAAGAATAGAGCAGTGTATGAAGTGTTGGGGCCTTGTGTGTGCTTGGC 1022
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 369 ATATATTCAATACAAGAATAGAGAAGTGTATGAAGTGTTGGGGCATTGTGTGTGCTTGGC 428
Query 1023 TAAAGGTGCAGCAGAGACGCTGAAGCTAAACATGGCCCTAATTCTGTTACCTGTTTGCAG 1082
|||||||||||| ||||| |||||||| ||||||||| | |||||||||||||| |||||
Sbjct 429 TAAAGGTGCAGCTGAGACACTGAAGCTGAACATGGCCTTGATTCTGTTACCTGTATGCAG 488
Query 1083 AAATACCATCACATGGCTTAGAAATAAGACTAGGTTGGGTGTTTTTGTTCCTTTTGATGA 1142
||||||||| ||||||||||||| ||| ||||| ||||||||| |||| |||||||||||
Sbjct 489 AAATACCATTACATGGCTTAGAACTAAAACTAGTTTGGGTGTTATTGTCCCTTTTGATGA 548
Query 1143 CAACCTCAATTTTCA-CAAGGTTATAGCGGTGGGAATTGCGATAGGAGTAGCCATACACT 1201
||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 549 CAACCTCAACTTTCATC-AGGTTATAGCGGTGGGAATCATGATAGGAGTAGCCATACACT 607
Query 1202 CTGTGTCCCACTTGGCGTGTGATTTTCCACTGCTAATCGCGGCAACTCCAGCGGAATACA 1261
| ||| ||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||
Sbjct 608 CGGTGACCCACTTGGCGTGCGATTTTCCACGGCTAATTGCGGCAACTCCAGAGGAATACA 667
Query 1262 TGCCTCT-CGGAAAATTCTTCGGAGAGGAGCAACCAAAGAGATACTTGCATTTTGTGAAG 1320
||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 668 TGCCTCTAC-GAAAATTCTTTGGAGAAGAGCAACCAAAGAGATACTTGCATTTTGTGAAG 726
Query 1321 TCAACAGAAGGAATAACAGGGCTTGTAATGGTTTTCTTGATGGTTATTGCTTTTACACTG 1380
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 727 TCAACAGAAGGAATAACAGGGCTCATAATGGTTTTCTTGATGGCAATTGCTTTTACACTA 786
Query 1381 GCTATGCCTTGGTTTAGACGGGGGAAGCTAGAGAAAAAGCTACCAGGGCCACTAAAGAAA 1440
||||| |||||||||||||| |||||||| || |||||||| |||| |||||||||||||
Sbjct 787 GCTATCCCTTGGTTTAGACGAGGGAAGCTCGAAAAAAAGCTTCCAGAGCCACTAAAGAAA 846
Query 1441 CTTGCGAGCTTCAATGCCTTCTG 1463
|| || |||||||||||||||||
Sbjct 847 CTAGCTAGCTTCAATGCCTTCTG 869
> Ahg887625 jgi|Araly1|887625|Al_scaffold_0027_1
Length=1554
Score = 656 bits (355), Expect = 0.0
Identities = 549/640 (86%), Gaps = 23/640 (4%)
Strand=Plus/Plus
Query 1924 TTCCCCAAAATTATGATTGATGGTCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTAC 1983
||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 925 TTCCCGAGAATTATGATTGATGGTCCGTACGGCGCACCAGCACAAGACTACAAGAAATAC 984
Query 1984 GAGGTGGTCCTGCTGATAGGTCTTGGCATTGGAGCCACCCCGATGATCAGCATTATCAAG 2043
|||||||| |||||||| || ||||| |||||||||||||| ||||| || ||||| |||
Sbjct 985 GAGGTGGTTCTGCTGATCGGCCTTGGGATTGGAGCCACCCCAATGATAAGTATTATTAAG 1044
Query 2044 GACATTATTAACAATACGGAGACCAAGGAAC-AACTC-A---G-CCAAATGGAGAAGGGA 2097
||||| || || |||||||||||||| |||| ||| | | || | | || ||||
Sbjct 1045 GACATAATCAATAATACGGAGACCAAAGAACTTGCTCAACTTGACCTAGCGAAGGTGGGA 1104
Query 2098 TCGCCACAAGAGCAACAAGGT-AATAAAGAAACTTTCAAGACT-CGAAGGGCTTACTTCT 2155
|| | ||| |||| |||| || || |||||||||||||||| | ||||||||||||||||
Sbjct 1105 TCACAACATGAGCCACAAAGTGAA-AAAGAAACTTTCAAGA-TGCGAAGGGCTTACTTCT 1162
Query 2156 ACTGGGTAACAAAGGAGCAGGGCACATTTGATTGGTTCAAGAACATCATGAACGAGATCG 2215
| |||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||| |
Sbjct 1163 ATTGGGTAACAAGGGAGCAAGGCTCATATGATTGGTTCAAGAACATCATGAACGAGATTG 1222
Query 2216 CAGAACGGGACAAAAGTAAAGTCATAGAACTACACAA-TCATTGCACTAGTGTCTACGAA 2274
| || |||||||||| |||||||||||||||||||| | |||||||||| ||||| |||
Sbjct 1223 CTGAGCGGGACAAAAACAAAGTCATAGAACTACACAACT-ATTGCACTAGCGTCTATGAA 1281
Query 2275 GAAGGAGACGTTCGTTCCGCGCTCATACGGATGCTTCAGTCTCTTAATTATGCCAAGAAT 2334
||||||||||||||||| ||| |||||| |||||||||||||| || ||||||||| |
Sbjct 1282 GAAGGAGACGTTCGTTCAGCGTTCATACATATGCTTCAGTCTCTAAACCATGCCAAGAGT 1341
Query 2335 GGTTTAGACATTGT-TGCTGGGAC-AAGGGTCATGTCCCA-TTTCGCCCGACCTAATTGG 2391
|||||||||||||| | ||||||| |||| | |||||| | ||| ||| ||||||||||
Sbjct 1342 GGTTTAGACATTGTCT-CTGGGACCAAGGTT-ATGTCCTACTTT-GCCAAACCTAATTGG 1398
Query 2392 AAAAACGTCTACAAACAGATAGCCATGGATCACCCTGGCGCTAATGTTGGAGTGTTCTAT 2451
||||| | |||||||||||||||||||||||||||||| ||||||||| || || |||
Sbjct 1399 GAAAACATTTACAAACAGATAGCCATGGATCACCCTGGCTCTAATGTTGT-GT-TT-TAT 1455
Query 2452 TGTGGAGCACCGGTATTGACGAAGGAGTTAAGGCAATT-AGCTTTGGAATTCACACACAA 2510
|||||||| |||| |||||| |||||||||||| |||| ||||||||||||| |||| ||
Sbjct 1456 TGTGGAGCCCCGGCATTGACAAAGGAGTTAAGG-AATTTAGCTTTGGAATTCGCACATAA 1514
Query 2511 GACCAGTACTAGATTCTCTTTCCACAAAGAGAACTTCTAA 2550
||| || ||||||||||| ||||||||||| ||||| |||
Sbjct 1515 GACAAGAACTAGATTCTCCTTCCACAAAGAAAACTTTTAA 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102043766355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5