BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25110.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492323 jgi|Araly1|492323|fgenesh2_kg.7__1756__AT4G25110.1 2069 0.0
> Ahg492323 jgi|Araly1|492323|fgenesh2_kg.7__1756__AT4G25110.1
Length=1696
Score = 2069 bits (1120), Expect = 0.0
Identities = 1365/1477 (92%), Gaps = 41/1477 (3%)
Strand=Plus/Plus
Query 304 AAAATAATGTTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTTCCTCCC 363
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 244 AAAAGAATGCTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTCCCTCCC 303
Query 364 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCCCCCGAGCCC 423
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 304 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCTCCCGATCCC 363
Query 424 CGTCTCCAATCTCACGCGTCGGCGAGCCCTTTTCCTTTCCCCAACTCATCT-CCG----- 477
||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| |||
Sbjct 364 CGTCTCCAATCCCACGCTTCGGCCAGCCCTTTTCCTTTCCCAAACTCATCTCCCGTAACT 423
Query 478 ---GCTCCATCCACTTTCATCTACCCGCCGCCAACACCTTCTCCGTACACTCACGCGCCG 534
|| |||||| ||| || ||||||||||||| |||| ||||||| |||||||||||||
Sbjct 424 CCAGCACCATCCGCTTCCACCTACCCGCCGCCATCACCGTCTCCGTTCACTCACGCGCCG 483
Query 535 CATGCACCGTCTCCATTCAACCACGCGCCTCCAGATTC-TTACCCGTTCACTCACGCGCC 593
| ||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||
Sbjct 484 CCTGCACCGTCTCCATTCAACCACGCGCCTCCAGA-ACATTATCCGTTCACTCCCGCGCC 542
Query 594 -TCCAGCATCGTCTCCATTCAACCACGCGCCGCCGGGTCCTCCACCGCCGGTACATGGAC 652
| ||||| |||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 543 GT-CAGCACCGTCTCCATTTAACCACGCGCCGCCGGGTCCTCCACCACCCGTACACGGAC 601
Query 653 AGAAGCGAGCGGTGATAGTCGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 712
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AGAAGCGAGCGGTGATCGTGGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 661
Query 713 GTATCAATGACGCAAACTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 772
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GTATCAATGACGCAAAGTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 721
Query 773 CTTGCATTCTTATGCTCACCGAAGAAGAAGCGGACCCAATGAGATGGCCAACGAAGAACA 832
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 722 CTTGCATTCTTATGCTCACCGAAGAAGAAACGGACCCAATGAGATGGCCAACGAAGAACA 781
Query 833 ACATAACAATGGCGATGCATTGGCTTGTTCTTAGCTGCAAACCGGGAGATTCCCTCGTCT 892
||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 782 ACATAACGATGGCGATGCATTGGCTAGTTGTAAGCTGCAAACCGGGAGATTCCCTCGTCT 841
Query 893 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACGACAACGGCGACGAGGTTGACGGCT 952
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 842 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACTACAACGGCGACGAGGTTGACGGCT 901
Query 953 TCGATGAGACTCTTCTCCCGGTGGACCACAGGACTTCAGGTGTCATCGTGGACGATGAGA 1012
|||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 902 TCGACGAGACTCTTCTCCCGGTGGACTACATGACTTCAGGTGTCATCGTGGACGATGAGA 961
Query 1013 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTTAAGCTCCATGCCATCGTCGACG 1072
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 962 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTCAAGCTCCATGCCATCGTCGACG 1021
Query 1073 CTTGTCATAGTGGTACCGTCATGGACTTACCTTATCTTTGTAGAATGGACAGGCTCGGAA 1132
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1022 CTTGTCATAGTGGTACCGTCATGGACTTGCCTTATCTTTGTAGAATGGATAGGCTCGGAA 1081
Query 1133 ACTATGAATGGGAAGACCATCGGCCTAAAACAGGAATGTGGAAAGGTACGAGTGGCGGTG 1192
||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 1082 ACTATGAATGGGAGGACCATCGGCCTCCATCAGGAATGTGGAAAGGTACAAGTGGCGGTG 1141
Query 1193 AAGTCTTCTCCTTCACAGGCTGCGATGATGACCAGACCTCGGCTGACACTCCGCAATTGT 1252
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1142 AAGTCTTCTCTTTCACGGGCTGCGATGATGACCAGACCTCAGCTGACACTCCGCAATTGT 1201
Query 1253 CAGGGAGCGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGTGGCC 1312
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1202 CAGGGAGTGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGCGGCC 1261
Query 1313 ACGGGATGACTTATGGGAGCTTGCTGAATGCAATGAGATCAACGGTTCATGAGATCTTCG 1372
|||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1262 ACGGGACGACTTATGGGAGCTTACTGAATGCAATGAGATCAACGGTTCACGAGATTTTCG 1321
Query 1373 ACAAAAACAAAGGTAGAGAGCTTGTGGAAGTGGGAGGTGCTGATTTTCTCTCTACTCTTC 1432
||||| ||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||
Sbjct 1322 ACAAAGACAAAGGTAGAGAGCTTGTGGAAGTGGAAGGCGCTGATCTTCTCACTACTCTTC 1381
Query 1433 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCCTGATGAGGAAGAGGAAGTAAACCAAGCCC 1492
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1382 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCTTGATGAGGAAGAGGAGGTAAACCAAGCCC 1441
Query 1493 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGAGGCATTTGCTGTATATGAGAAGC 1552
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1442 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGACGCATTTGATGTATATGAGAAGC 1501
Query 1553 CCTTCTCTTTATAATATCACCTTAAGA--AG-ACAAAAGAATGAGTATGAAATTTCGGAG 1609
|||| ||||| |||||||||||||||| || |||||||||||||||||||| |
Sbjct 1502 CCTTTTCTTTGTAATATCACCTTAAGAGGAGGACAAAAGAATGAGTATGAAA------A- 1554
Query 1610 ACCAACaaaaaaaaCTTTATTGAGCTTGGAGTGAAGCTATATATATGGGGCAAGATCATA 1669
| ||| ||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 1555 A--AAC---------TTTATTGAGCTTGGAGTGAAG--ATATAT--GGGGCATGATCATA 1599
Query 1670 ATATGTTTATATCGGCCTTTTCATTAACTGAAAATAATAGTTTTGAGAAATAT-ATCAAA 1728
||||||||||||||||||||||||||| ||||||||| |||| |||||||| | ||||||
Sbjct 1600 ATATGTTTATATCGGCCTTTTCATTAAGTGAAAATAAAAGTTATGAGAAATTTTATCAAA 1659
Query 1729 TGGTAAACAGACATCATCTTTGAAAAATA-CCATCAA 1764
||||||||||||||||||||| |||||| |||||||
Sbjct 1660 TGGTAAACAGACATCATCTTT-AAAAATTGCCATCAA 1695
Score = 237 bits (128), Expect = 2e-61
Identities = 218/257 (85%), Gaps = 23/257 (9%)
Strand=Plus/Plus
Query 4 GAAGGAACAATTATAATTCGCAACTTGCTAATTTAACTTG-G--G------TTGTATATA 54
||||||| ||||||||||| |||||||||||||||| ||| | | |||||||||
Sbjct 1 GAAGGAAGAATTATAATTCTCAACTTGCTAATTTAATTTGTGTCGTATACATTGTATATA 60
Query 55 TGCAAGTTGAGACGACTTCATTTGATCATCAAACAAAAGTCTTGACGAATACATTAGCGG 114
||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 61 TGCCAGTTGAGACGACTT-GTTTGATCATCAAA-AAAAGTCTTGACGAATACATAAGCCT 118
Query 115 ATAAGCTTAAAGTCGTC-GA--AAGAATTTTCTTCCTT-GCCTTATTGGCATCTTCTTCT 170
| ||| | ||| || | || |||||||| ||| ||||||||||||||||||||
Sbjct 119 A-AAG--T--CGTC-TCTTACTCAGCATTTTCTT-CTTCACCTTATTGGCATCTTCTTCT 171
Query 171 AAAGTTCCAATGCTTTGATCATTGATGATTTTCCCAGCATCAGAAACTAAAGGCTATAAT 230
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 172 AAAGTTCCAATGCTT-GATCATTGATGATTTTCCCAGCATCAGAACCGAAAGGCTATAAT 230
Query 231 CTGCAACTTTCAAGAAA 247
||||||||||||| |||
Sbjct 231 CTGCAACTTTCAAAAAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5