BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25130.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492320 jgi|Araly1|492320|fgenesh2_kg.7__1753__AT4G25130.1 1435 0.0
> Ahg492320 jgi|Araly1|492320|fgenesh2_kg.7__1753__AT4G25130.1
Length=1016
Score = 1435 bits (777), Expect = 0.0
Identities = 946/1026 (92%), Gaps = 18/1026 (2%)
Strand=Plus/Plus
Query 32 AAAGTTCCAAATTTCACCACGTCACTGCTTTGATAATGCAGGTCctcgtcgtctctcctc 91
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 AAAGTTCCTAATTTCACCACGTCACTGCTTTGATAATGCAGGTCATCGTCGCCTCTCCTC 60
Query 92 cgctcatcgccgccgcatctctctctaaacctctcaattctctctctaaagccgcactct 151
|||||||| ||||||| ||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 61 CGCTCATCTCCGCCGCTTCTCTCTCTAAACCTTTCCATTCTCTCTCTAAGGCCGCACTCT 120
Query 152 ctttctcCAGAGCCAAACCCATTTGTCCTTTCCCTCAAACCTCTCGACGACCAATCTCCG 211
||||||| ||||||||||||||||| |||||||| |||| | ||| |||||| |||||||
Sbjct 121 CTTTCTCTAGAGCCAAACCCATTTGCCCTTTCCCCCAAA-C-CTC-ACGACCCATCTCCG 177
Query 212 TATACAAATCCCCAATGAACAACCTTTTCAACAGACTCGGATTCGGGTCTCGTCCTCAAG 271
| ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 178 TCTACAAATCCCCGATGAACAACCTCTTCAACAGGCTCGGTTTCGGGTCTCGTCCCCAAG 237
Query 272 CCCAAGCT-GACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGATGATGTTCCGTCT 330
| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 CTCAAG-TCGACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGACGATGTTCCGTCG 296
Query 331 TCAGGTCAGCAATTCGCGCAATTTGGCGCCGGTTGTTTCTGGGGAGTGGAGCTAGCTTAC 390
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 297 CCAGGTCAGCAATTCGCGCAATTCGGCGCCGGTTGCTTCTGGGGAGTGGAGCTAGCTTAC 356
Query 391 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCATCGTGCACAAT 450
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 357 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCCTCATGCACAAT 416
Query 451 CCGAGTTACGAGGATGTCTGTACTGGCACTACGGGACATAACGAGGTTGTTAGAGTTCAG 510
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 417 CCGAGTTACGAAGATGTCTGTACTGGCACGACGGGACACAACGAGGTTGTTAGAGTTCAG 476
Query 511 TATGATCCCAAAGAGTGTAGCTTTGAGAGCTTGCTTGATGTTTTCTGGAATCGTCATGAT 570
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 477 TACGATCCTAAAGAGTGTAGCTTTGAGAGCTTGCTCGATGTTTTCTGGAATCGCCATGAT 536
Query 571 CCAACCACCTTGAATCGTCAGGGTGGG-GATGTGGGAACGCAGTATCGATCAGGTATATA 629
||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||
Sbjct 537 CCAACCACCTTGAATCGTCAGGG-GGGCGATGTGGGAACTCAGTATCGATCAGGCATATA 595
Query 630 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCTGTTGAGAAACAGCAGAAGAT 689
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 596 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCCGTTGAGAAACAGCAGAAGAT 655
Query 690 ATTGAACAAGAGGATTGTCACAGAGATACTTCCCGCTACGAAATTCTACAGAGCAGAAAA 749
||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 656 ATTGAACAAGAAGATTGTGACAGAGATACTTCCCGCGACAAAATTCTACAGAGCAGAAAA 715
Query 750 TTACCACCAGCAATACCTGGCAAAAGGGGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 809
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 TTACCACCAGCAATACCTGGCAAAAGGCGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 775
Query 810 AGGTTGCAAGGATCCAATCCGATGCTATGGCTAAGAAACTAAGTCAGTCTTCCCTCAAGC 869
|||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 776 AGGTTGCAAGGATCCAATCCGATGTTACGGCTAAGAAAATAAGTCAGTCTTCCCTCAAGC 835
Query 870 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTTT 929
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTGT 895
Query 930 CTTGTCTTTGTTATGCAACCAATGGTTATGATGCATCCTATGCTTA-T-ATGAATCAAG- 986
|| |||||||||||| ||||| |||| ||||||| || ||||||| | || ||| |
Sbjct 896 CTGGTCTTTGTTATGTAACCATTGGTAATGATGCGTCATATGCTTGCTTATAAATTT-GT 954
Query 987 GCTTTGTCCAAATCAATT-TCAA-TTTGATACTACAGTACTGGTA-ATACAATTTGGGAA 1043
| ||| | ||| ||| | || |||| ||||||||||||||| ||||||||||||||
Sbjct 955 G-TTT--CAAAAACAACCAT-AAGTTTGGTACTACAGTACTGGTCCATACAATTTGGGAA 1010
Query 1044 GTTCTC 1049
|| |||
Sbjct 1011 GTCCTC 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5