BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25140.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492319 jgi|Araly1|492319|fgenesh2_kg.7__1752__AT4G25140.1 1107 0.0
> Ahg492319 jgi|Araly1|492319|fgenesh2_kg.7__1752__AT4G25140.1
Length=821
Score = 1107 bits (599), Expect = 0.0
Identities = 691/735 (94%), Gaps = 7/735 (1%)
Strand=Plus/Plus
Query 1 ATATACACATCTTTTTGATCA--ATCTCTCATTCAAAATCTCATTCTCTCTAGTAAACAA 58
||||||||||| ||||||||| |||||||||||| ||||||||||||||| | |||||
Sbjct 1 ATATACACATCCTTTTGATCATTCTCTCTCATTCAAGATCTCATTCTCTCTATTCAACAA 60
Query 59 GAACaaaaaaaTGGCGGATACAGCTAGAGGAACCCATCACGATATCATCGGCAGAGACCA 118
|||| |||||||||||||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 61 GAAC-AAAAAATGGCGGATACAGGTAGAACAACCCATCACGATATCATAGGCAGAGACCA 119
Query 119 GTACCCGATGATGGGCCGAGACCGAGACCAGTACCAGATGTCCGGACGAGGATCTGACTA 178
|||||||||||| ||||||||||||||||| || ||||||||||||||||| || |||||
Sbjct 120 GTACCCGATGATTGGCCGAGACCGAGACCAATATCAGATGTCCGGACGAGGGTCCGACTA 179
Query 179 CTCCAAGTCTAGGCAGATTGCTAAAGCTGCAACTGCTGTCACAGCTGGTGGTTCCCTCCT 238
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 180 CTCCAAGTCTAGGCAGATTGCTAAAGCTGCTACTGCTGTCACAGCTGGTGGTTCTCTCCT 239
Query 239 TGTTCTCTCCAGCCTTACCCTTGTTGGAACTGTCATAGCTTTGACTGTTGCAACACCTCT 298
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTCCTCTCCAGCCTTACCCTTGTTGGAACTGTCATAGCTTTGACTGTTGCAACACCTCT 299
Query 299 GCTCGTTATCTTCAGCCCAATCCTTGTCCCGGCTCTCATCACAGTTGCACTCCTCATCAC 358
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 300 GCTCGTTATTTTCAGCCCAATCCTTGTCCCGGCTCTCATCACCGTTGCACTGCTCATCAC 359
Query 359 CGGTTTTCTTTCCTCTGGAGGGTTTGGCATTGCCGCTATAACCGTTTTCTCTTGGATTTA 418
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CGGTTTTCTCTCCTCTGGTGGGTTTGGCATTGCAGCTATAACCGTTTTCTCTTGGATTTA 419
Query 419 CAAGTACGCAACGGGAGAGCACCCACAGGGATCAGACAAGTTGGACAGTGCAAGGATGAA 478
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 420 CAAGTACGCAACCGGAGAGCACCCACAGGGATCAGATAGGTTGGACAGTGCAAGGATGAA 479
Query 479 GTTGGGAAGCAAAGCTCAGGATCTGAAAGACAGAGCTCAGTACTACGGACAGCAACATAC 538
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GTTGGGAAGCAAGGCTCAGGATCTAAAAGACAGAGCTCAGTACTACGGACAGCAACATAC 539
Query 539 TGGTGGGGAACATGACCGTGACCGTACTCGTGGTGGCCAGCACACTACTTAAGTTACCCC 598
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 540 TGGTGGGGAACATGACCGTGACCGTACTCGTGTTGGCCAGCACACTACTTAAATTTCCCG 599
Query 599 ACTGATGTCATCGTCATAGTCCAATAACTCCAATGTCGGGGAGTTAGTTTATGAGGAATA 658
| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 G--G-TGTCATCATCATAGTCCAATAACTCCGATGTCGGGGAGTTAGTTTATGAGGAATA 656
Query 659 AAGTGTTTAGAATTTGATCAGGGGGAGATAATAAAAGCCGAGTTTGAATCTTTTTGTTAT 718
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 657 AAGTGTTTAGAATTTGATCAGGGG-AGATAATAAAAGCCGATTTTTAATCTTTTTGTTAT 715
Query 719 AAGTAATGTTTATGT 733
|||||||||||||||
Sbjct 716 AAGTAATGTTTATGT 730
Score = 130 bits (70), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 803 TTGTACTTTATTTGGCTTCTTTGTAAGTTGGTAACGGTGGTCTATATATGGAAAAGGTCT 862
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 737 TTGTACTTTCTTTGGCTTCTTTGTAAG-TGGTAACGTTGGTCTATATATGGAAAAGGTCT 795
Query 863 TGTTTTGTTAAACTTATGTTAGTTAA 888
|||||||||||||| ||| |||||||
Sbjct 796 TGTTTTGTTAAACTAATGATAGTTAA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5