BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25140.1 Length=908 Score E Sequences producing significant alignments: (Bits) Value Ahg492319 jgi|Araly1|492319|fgenesh2_kg.7__1752__AT4G25140.1 1107 0.0 > Ahg492319 jgi|Araly1|492319|fgenesh2_kg.7__1752__AT4G25140.1 Length=821 Score = 1107 bits (599), Expect = 0.0 Identities = 691/735 (94%), Gaps = 7/735 (1%) Strand=Plus/Plus Query 1 ATATACACATCTTTTTGATCA--ATCTCTCATTCAAAATCTCATTCTCTCTAGTAAACAA 58 ||||||||||| ||||||||| |||||||||||| ||||||||||||||| | ||||| Sbjct 1 ATATACACATCCTTTTGATCATTCTCTCTCATTCAAGATCTCATTCTCTCTATTCAACAA 60 Query 59 GAACaaaaaaaTGGCGGATACAGCTAGAGGAACCCATCACGATATCATCGGCAGAGACCA 118 |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||| Sbjct 61 GAAC-AAAAAATGGCGGATACAGGTAGAACAACCCATCACGATATCATAGGCAGAGACCA 119 Query 119 GTACCCGATGATGGGCCGAGACCGAGACCAGTACCAGATGTCCGGACGAGGATCTGACTA 178 |||||||||||| ||||||||||||||||| || ||||||||||||||||| || ||||| Sbjct 120 GTACCCGATGATTGGCCGAGACCGAGACCAATATCAGATGTCCGGACGAGGGTCCGACTA 179 Query 179 CTCCAAGTCTAGGCAGATTGCTAAAGCTGCAACTGCTGTCACAGCTGGTGGTTCCCTCCT 238 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 180 CTCCAAGTCTAGGCAGATTGCTAAAGCTGCTACTGCTGTCACAGCTGGTGGTTCTCTCCT 239 Query 239 TGTTCTCTCCAGCCTTACCCTTGTTGGAACTGTCATAGCTTTGACTGTTGCAACACCTCT 298 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGTCCTCTCCAGCCTTACCCTTGTTGGAACTGTCATAGCTTTGACTGTTGCAACACCTCT 299 Query 299 GCTCGTTATCTTCAGCCCAATCCTTGTCCCGGCTCTCATCACAGTTGCACTCCTCATCAC 358 ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 300 GCTCGTTATTTTCAGCCCAATCCTTGTCCCGGCTCTCATCACCGTTGCACTGCTCATCAC 359 Query 359 CGGTTTTCTTTCCTCTGGAGGGTTTGGCATTGCCGCTATAACCGTTTTCTCTTGGATTTA 418 ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 360 CGGTTTTCTCTCCTCTGGTGGGTTTGGCATTGCAGCTATAACCGTTTTCTCTTGGATTTA 419 Query 419 CAAGTACGCAACGGGAGAGCACCCACAGGGATCAGACAAGTTGGACAGTGCAAGGATGAA 478 |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 420 CAAGTACGCAACCGGAGAGCACCCACAGGGATCAGATAGGTTGGACAGTGCAAGGATGAA 479 Query 479 GTTGGGAAGCAAAGCTCAGGATCTGAAAGACAGAGCTCAGTACTACGGACAGCAACATAC 538 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 GTTGGGAAGCAAGGCTCAGGATCTAAAAGACAGAGCTCAGTACTACGGACAGCAACATAC 539 Query 539 TGGTGGGGAACATGACCGTGACCGTACTCGTGGTGGCCAGCACACTACTTAAGTTACCCC 598 |||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| Sbjct 540 TGGTGGGGAACATGACCGTGACCGTACTCGTGTTGGCCAGCACACTACTTAAATTTCCCG 599 Query 599 ACTGATGTCATCGTCATAGTCCAATAACTCCAATGTCGGGGAGTTAGTTTATGAGGAATA 658 | ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 600 G--G-TGTCATCATCATAGTCCAATAACTCCGATGTCGGGGAGTTAGTTTATGAGGAATA 656 Query 659 AAGTGTTTAGAATTTGATCAGGGGGAGATAATAAAAGCCGAGTTTGAATCTTTTTGTTAT 718 |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| Sbjct 657 AAGTGTTTAGAATTTGATCAGGGG-AGATAATAAAAGCCGATTTTTAATCTTTTTGTTAT 715 Query 719 AAGTAATGTTTATGT 733 ||||||||||||||| Sbjct 716 AAGTAATGTTTATGT 730 Score = 130 bits (70), Expect = 2e-29 Identities = 81/86 (94%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 803 TTGTACTTTATTTGGCTTCTTTGTAAGTTGGTAACGGTGGTCTATATATGGAAAAGGTCT 862 ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 737 TTGTACTTTCTTTGGCTTCTTTGTAAG-TGGTAACGTTGGTCTATATATGGAAAAGGTCT 795 Query 863 TGTTTTGTTAAACTTATGTTAGTTAA 888 |||||||||||||| ||| ||||||| Sbjct 796 TGTTTTGTTAAACTAATGATAGTTAA 821 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33662535711 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5