BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25150.1 Length=1228 Score E Sequences producing significant alignments: (Bits) Value Ahg329150 jgi|Araly1|329150|fgenesh1_pm.C_scaffold_7001377 1242 0.0 Ahg495196 jgi|Araly1|495196|fgenesh2_kg.8__1012__AT5G51260.1 606 1e-172 > Ahg329150 jgi|Araly1|329150|fgenesh1_pm.C_scaffold_7001377 Length=783 Score = 1242 bits (672), Expect = 0.0 Identities = 748/785 (95%), Gaps = 4/785 (1%) Strand=Plus/Plus Query 244 ATGCGGATTCTCGTGAATCTCATTCTCTTCTCCTTGAT-TCCTCTGGCGTTCTCCAATGA 302 ||||||||| ||||||||||| |||||||||||||| | |||||| |||||||| ||||| Sbjct 1 ATGCGGATTTTCGTGAATCTCCTTCTCTTCTCCTTG-TGTCCTCTCGCGTTCTCGAATGA 59 Query 303 AAACTCCAGCTCGTATCTCATTGCGCGACCATTGATCTTCGAAACCCAGCTCAAGAACAT 362 |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 60 AAACTCCAGCTCGTATCTCATTTCGCGACCATTGATCTTCGAGACCCAGCTCAAGAACAT 119 Query 363 AAACGACAATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCT 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGACGACAATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCT 179 Query 423 CGCTCCATGGAAAACCATTCCAGCTGAATGCGCCGATTACGTGAAAGATTACCTGATGGG 482 ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| Sbjct 180 CGCTCCATGGAAAACCATTCCAGCTGAGTGCGCCGATTACGTTTATCATTACCTGATGGG 239 Query 483 TGAAGGTTACGTCGTCGATGTGGAGAGAGTCTCCGAAGAAGCTAAGGTTTACGCGAGCAG 542 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 240 TGAAGGTTACGTCGTCGATGTGGAGAGAGTCTCCGAAGAGGCTAAGCTTTACGCGAGCAG 299 Query 543 CTTCGAATCTAACGGTGACGGGAAAGACATTTGGATTTTCGATATTGATGAGACG-TTAT 601 |||| ||||||||| |||||||||||| || |||||||||||||||||||||||| || | Sbjct 300 CTTCCAATCTAACGCTGACGGGAAAGATATCTGGATTTTCGATATTGATGAGACGCTT-T 358 Query 602 TGTCGAATCTTCCTTATTACATGGAACACGGTTGTGGGTTGGAAGTTTTTGATCATTCAA 661 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | Sbjct 359 TGTCGAATCTTCCTTATTATATGGAACACGGTTGTGGGCTGGAAGTTTTTGATCATTCCA 418 Query 662 AGTTTGATATGTGGGTAGAGAAAGGGATAGCACCTGCTATAGCACCAAGCTTGAAGCTTT 721 ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 419 AGTTTGATAAGTGGGTGGAGAAAGGGATAGCACCTGCCATAGCACCAAGCTTGAAGCTTT 478 Query 722 ACCAAAAGGTTATACATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACC 781 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ACCAAAAGGTTATAGATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACC 538 Query 782 ACCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTA 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 ACCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTA 598 Query 842 TTCTGAGATCGTTGGATGATCGGAACAAAACAGCGACCATGTACAAGTCAGAGAAGAGAG 901 ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| | Sbjct 599 TTCTGAGATCGTTGGATGAGCAGAACAAAACAGCGACCATATACAAGTCAGAGAAGAGGG 658 Query 902 AGGAGATGGTGAAAGAAGGGTATAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGATT 961 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 659 AGGAGATGGTGAAAGAAGGGTTTAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGATT 718 Query 962 TGTTGGGTTCTGCAATGTCAGAAAGATCCTTCAAACTTCCAAATCCAATGTATTATATCC 1021 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 719 TATTGGGTTCTGCAATGTCAGAAAGATCCTTCAAACTTCCAAATCCCATGTATTATATCC 778 Query 1022 CCTGA 1026 ||||| Sbjct 779 CCTGA 783 > Ahg495196 jgi|Araly1|495196|fgenesh2_kg.8__1012__AT5G51260.1 Length=1171 Score = 606 bits (328), Expect = 1e-172 Identities = 560/670 (84%), Gaps = 24/670 (4%) Strand=Plus/Plus Query 371 ATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCTCGCTCCAT 430 |||||||| | ||||| |||| |||||||||||||||||||| ||||||||||| || | Sbjct 331 ATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGGAGATGAACAATCTCGCGCCGT 390 Query 431 GGAAAACCATTCCAGCT-GAATGCGCCGATTACGTGAAAGATTACCTGATGGGTGAAGGT 489 ||||||| ||||| | | || || |||||||||||||| |||||| |||||||| |||| Sbjct 391 GGAAAACAATTCC-GGTGGAGTGTGCCGATTACGTGAAGGATTACGTGATGGGTAAAGGC 449 Query 490 TACGTCGTCGATGTGGAGAGAGTCTCCGAAGAAGCTAAGGT-TTACGCGAGCAGCTTCGA 548 ||| || |||| ||||||||||||| ||||||||| | | || |||||||||| |||| Sbjct 450 TACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGATCTT-CGCGAGCAGCGTCGA 508 Query 549 A-TCTAACGGTGACGGGAAAGACATTTGGATTTTCGATATTGATGAGACGT-TATTGTCG 606 | ||| ||| || || ||||| ||||||||||||||||| |||||||| | | || || Sbjct 509 ATTCT-CCGGCGATGGCAAAGATATTTGGATTTTCGATATCGATGAGAC-TCTCTTATCC 566 Query 607 AATCTTCCTTATTACATGGAACACGG-TTGTGGGTTGGAAG-TTTTTGATCATTCAAAGT 664 |||||||| |||||||| || || || || |||||||| || ||||||||||||| ||| Sbjct 567 AATCTTCCATATTACATTGACCATGGCTT-TGGGTTGG-AGCTTTTTGATCATTCGGAGT 624 Query 665 TTGATATGTGGGTAGAGAAAGGGA-TAGCACCTGCTATAGCACCAAGCTTGAAGCTTTAC 723 |||||| ||||||||||||| ||| | ||||| ||||||||||||||||||||||||||| Sbjct 625 TTGATAAGTGGGTAGAGAAA-GGAGTGGCACCAGCTATAGCACCAAGCTTGAAGCTTTAC 683 Query 724 CAAA-AGGTTATACATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACCA 782 || | || | ||| |||| || ||||||||| |||||||||||||| | | ||||| ||| Sbjct 684 CAGAGAG-TGATAGATTTAGGATACAAAGTTTTCTTGCTTACAGGGAGGAAAGAGAGCCA 742 Query 783 CCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTAT 842 | || || ||||||| ||||||||| |||||| |||||||| ||||||||||||||||| Sbjct 743 CAGGCTTGTCACTGTTGAAAACCTGATCAATGCTGGTTTCCAGAACTGGGACAAGCTTAT 802 Query 843 TCTGAGATCGTTG-GATGATCGGAACAAAACAGCGAC-CATGTACAAGTCAGAGAAGAGA 900 ||| ||||| | || || | | |||||| ||||| | | ||||| || ||||||||| Sbjct 803 TCTCAGATC-TCCAGACGAACAGCACAAAATGGCGACAC-TATACAAATCTGAGAAGAGA 860 Query 901 GAGGAGATGGTGAAAGAAGGGTATAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGAT 960 || |||||||||||||| || || ||||| ||||||||||||||||| |||||||||||| Sbjct 861 GATGAGATGGTGAAAGATGGATACAGGATTAGAGGCAATTCAGGTGATCAATGGAGTGAT 920 Query 961 TTGTTGGGTTC-TGCAATGTCAGAAAGATCCTTCAAACTT-CCAAATCCAATGTATTATA 1018 ||||||||| | | || |||| || |||| |||||||| |||| |||||||||||||| Sbjct 921 TTGTTGGGTACCTCCA-TGTCTCAACGATCTTTCAAACTCGCCAA-TCCAATGTATTATA 978 Query 1019 TCCCCTGAAG 1028 |||||||||| Sbjct 979 TCCCCTGAAG 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45861869151 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5