BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25150.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329150 jgi|Araly1|329150|fgenesh1_pm.C_scaffold_7001377 1242 0.0
Ahg495196 jgi|Araly1|495196|fgenesh2_kg.8__1012__AT5G51260.1 606 1e-172
> Ahg329150 jgi|Araly1|329150|fgenesh1_pm.C_scaffold_7001377
Length=783
Score = 1242 bits (672), Expect = 0.0
Identities = 748/785 (95%), Gaps = 4/785 (1%)
Strand=Plus/Plus
Query 244 ATGCGGATTCTCGTGAATCTCATTCTCTTCTCCTTGAT-TCCTCTGGCGTTCTCCAATGA 302
||||||||| ||||||||||| |||||||||||||| | |||||| |||||||| |||||
Sbjct 1 ATGCGGATTTTCGTGAATCTCCTTCTCTTCTCCTTG-TGTCCTCTCGCGTTCTCGAATGA 59
Query 303 AAACTCCAGCTCGTATCTCATTGCGCGACCATTGATCTTCGAAACCCAGCTCAAGAACAT 362
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 60 AAACTCCAGCTCGTATCTCATTTCGCGACCATTGATCTTCGAGACCCAGCTCAAGAACAT 119
Query 363 AAACGACAATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGACGACAATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCT 179
Query 423 CGCTCCATGGAAAACCATTCCAGCTGAATGCGCCGATTACGTGAAAGATTACCTGATGGG 482
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 180 CGCTCCATGGAAAACCATTCCAGCTGAGTGCGCCGATTACGTTTATCATTACCTGATGGG 239
Query 483 TGAAGGTTACGTCGTCGATGTGGAGAGAGTCTCCGAAGAAGCTAAGGTTTACGCGAGCAG 542
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 240 TGAAGGTTACGTCGTCGATGTGGAGAGAGTCTCCGAAGAGGCTAAGCTTTACGCGAGCAG 299
Query 543 CTTCGAATCTAACGGTGACGGGAAAGACATTTGGATTTTCGATATTGATGAGACG-TTAT 601
|||| ||||||||| |||||||||||| || |||||||||||||||||||||||| || |
Sbjct 300 CTTCCAATCTAACGCTGACGGGAAAGATATCTGGATTTTCGATATTGATGAGACGCTT-T 358
Query 602 TGTCGAATCTTCCTTATTACATGGAACACGGTTGTGGGTTGGAAGTTTTTGATCATTCAA 661
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct 359 TGTCGAATCTTCCTTATTATATGGAACACGGTTGTGGGCTGGAAGTTTTTGATCATTCCA 418
Query 662 AGTTTGATATGTGGGTAGAGAAAGGGATAGCACCTGCTATAGCACCAAGCTTGAAGCTTT 721
||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 AGTTTGATAAGTGGGTGGAGAAAGGGATAGCACCTGCCATAGCACCAAGCTTGAAGCTTT 478
Query 722 ACCAAAAGGTTATACATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACC 781
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACCAAAAGGTTATAGATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACC 538
Query 782 ACCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTA 598
Query 842 TTCTGAGATCGTTGGATGATCGGAACAAAACAGCGACCATGTACAAGTCAGAGAAGAGAG 901
||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |
Sbjct 599 TTCTGAGATCGTTGGATGAGCAGAACAAAACAGCGACCATATACAAGTCAGAGAAGAGGG 658
Query 902 AGGAGATGGTGAAAGAAGGGTATAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGATT 961
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGAGATGGTGAAAGAAGGGTTTAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGATT 718
Query 962 TGTTGGGTTCTGCAATGTCAGAAAGATCCTTCAAACTTCCAAATCCAATGTATTATATCC 1021
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 TATTGGGTTCTGCAATGTCAGAAAGATCCTTCAAACTTCCAAATCCCATGTATTATATCC 778
Query 1022 CCTGA 1026
|||||
Sbjct 779 CCTGA 783
> Ahg495196 jgi|Araly1|495196|fgenesh2_kg.8__1012__AT5G51260.1
Length=1171
Score = 606 bits (328), Expect = 1e-172
Identities = 560/670 (84%), Gaps = 24/670 (4%)
Strand=Plus/Plus
Query 371 ATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCTCGCTCCAT 430
|||||||| | ||||| |||| |||||||||||||||||||| ||||||||||| || |
Sbjct 331 ATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGGAGATGAACAATCTCGCGCCGT 390
Query 431 GGAAAACCATTCCAGCT-GAATGCGCCGATTACGTGAAAGATTACCTGATGGGTGAAGGT 489
||||||| ||||| | | || || |||||||||||||| |||||| |||||||| ||||
Sbjct 391 GGAAAACAATTCC-GGTGGAGTGTGCCGATTACGTGAAGGATTACGTGATGGGTAAAGGC 449
Query 490 TACGTCGTCGATGTGGAGAGAGTCTCCGAAGAAGCTAAGGT-TTACGCGAGCAGCTTCGA 548
||| || |||| ||||||||||||| ||||||||| | | || |||||||||| ||||
Sbjct 450 TACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGATCTT-CGCGAGCAGCGTCGA 508
Query 549 A-TCTAACGGTGACGGGAAAGACATTTGGATTTTCGATATTGATGAGACGT-TATTGTCG 606
| ||| ||| || || ||||| ||||||||||||||||| |||||||| | | || ||
Sbjct 509 ATTCT-CCGGCGATGGCAAAGATATTTGGATTTTCGATATCGATGAGAC-TCTCTTATCC 566
Query 607 AATCTTCCTTATTACATGGAACACGG-TTGTGGGTTGGAAG-TTTTTGATCATTCAAAGT 664
|||||||| |||||||| || || || || |||||||| || ||||||||||||| |||
Sbjct 567 AATCTTCCATATTACATTGACCATGGCTT-TGGGTTGG-AGCTTTTTGATCATTCGGAGT 624
Query 665 TTGATATGTGGGTAGAGAAAGGGA-TAGCACCTGCTATAGCACCAAGCTTGAAGCTTTAC 723
|||||| ||||||||||||| ||| | ||||| |||||||||||||||||||||||||||
Sbjct 625 TTGATAAGTGGGTAGAGAAA-GGAGTGGCACCAGCTATAGCACCAAGCTTGAAGCTTTAC 683
Query 724 CAAA-AGGTTATACATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACCA 782
|| | || | ||| |||| || ||||||||| |||||||||||||| | | ||||| |||
Sbjct 684 CAGAGAG-TGATAGATTTAGGATACAAAGTTTTCTTGCTTACAGGGAGGAAAGAGAGCCA 742
Query 783 CCGGGTTATCACTGTCGAAAACCTGCGCAATGCCGGTTTCCATAACTGGGACAAGCTTAT 842
| || || ||||||| ||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 743 CAGGCTTGTCACTGTTGAAAACCTGATCAATGCTGGTTTCCAGAACTGGGACAAGCTTAT 802
Query 843 TCTGAGATCGTTG-GATGATCGGAACAAAACAGCGAC-CATGTACAAGTCAGAGAAGAGA 900
||| ||||| | || || | | |||||| ||||| | | ||||| || |||||||||
Sbjct 803 TCTCAGATC-TCCAGACGAACAGCACAAAATGGCGACAC-TATACAAATCTGAGAAGAGA 860
Query 901 GAGGAGATGGTGAAAGAAGGGTATAGGATCAGAGGCAATTCAGGTGACCAATGGAGTGAT 960
|| |||||||||||||| || || ||||| ||||||||||||||||| ||||||||||||
Sbjct 861 GATGAGATGGTGAAAGATGGATACAGGATTAGAGGCAATTCAGGTGATCAATGGAGTGAT 920
Query 961 TTGTTGGGTTC-TGCAATGTCAGAAAGATCCTTCAAACTT-CCAAATCCAATGTATTATA 1018
||||||||| | | || |||| || |||| |||||||| |||| ||||||||||||||
Sbjct 921 TTGTTGGGTACCTCCA-TGTCTCAACGATCTTTCAAACTCGCCAA-TCCAATGTATTATA 978
Query 1019 TCCCCTGAAG 1028
||||||||||
Sbjct 979 TCCCCTGAAG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5