BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25160.1
Length=2832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492318 jgi|Araly1|492318|fgenesh2_kg.7__1751__AT4G25160.1 4047 0.0
Ahg949672 jgi|Araly1|949672|scaffold_801559.1 833 0.0
Ahg916746 jgi|Araly1|916746|Al_scaffold_0008_1497 758 0.0
> Ahg492318 jgi|Araly1|492318|fgenesh2_kg.7__1751__AT4G25160.1
Length=2629
Score = 4047 bits (2191), Expect = 0.0
Identities = 2479/2619 (95%), Gaps = 16/2619 (1%)
Strand=Plus/Plus
Query 50 ATGGAAGCTTCCACCATTTCTTCTCTCAATTTTTGTATTGGGTTTGAC-TAAAGTCGCAT 108
||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||| || |
Sbjct 24 ATGGAAGCTTCCACCATTTCTTC-ATCAATTTCTGTCTTGGGTTTGACTTAAAGTTGCCT 82
Query 109 CCTTTATTTACCAGGGTCA-ATAGAAACAAGAA-CACAAAAGATTAACAATGAGTAGATC 166
|||||| | |||| ||| | | |||||||| | |||||| |||||||||||||||
Sbjct 83 CCTTTAATAACCA-GGT-AGGT-TCAACAAGAAGAAAAAAAGAGAAACAATGAGTAGATC 139
Query 167 ACCAGACAAGCTTGCTCTtcctcctcctcctcctcctccCCCATCTCGTACCGTCGTTGT 226
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ACCAGTCAATCTTGCCCTTCCTCCTCCTCCTCCTCCTCCCCCATCTCGTACCGTCGTTGT 199
Query 227 GGCTCTAAGTGGGAGCAGTAAAAGCAAATATGTAGTTACATGGGCGATCGAAAAATTTGC 286
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 200 GGCTCTAAGTGGGAGCAGTAAAAGCAAATATGTAGTTACATGGGCGCTCGAAAAATTTGC 259
Query 287 TACTGAAGGAAATGTTGGCTTCAAGCTGCTTCACATCCATCCAATGATTACTTCTGTACC 346
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 260 TCCTGAAGGAAATGTTGGCTTCAAGCTACTTCACATCCATCCAATGATTACTTCTGTACC 319
Query 347 TACACCAATGGGAAATGCAATCCCGATTTCCGAGGTACGAGATGATGTAGTAACTGCATA 406
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 320 TACACCAATGGGAAATGCAATCCCGATTTCCGAGGTAAGAGATGATGTAGTAACTGCGTA 379
Query 407 TAGACAGGAAATACTGTGGCAGTCTGAAGAAATGCTTAAACCTTACACAAAACTGTTCGT 466
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 380 TAGACAGGAAATACTGTGGCAGTCTGAAGAAATGCTTAAACCTTTCACAAAATTGTTTGT 439
Query 467 GCGGAGAAAGGTTGCAGTAGAAGTTCTTGTGATCGAATCAGATAATGTGGCAGCCGCAAT 526
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 440 GCGGAAAAAGGTTGCAGTAGAAGTTCTTGTGATCGAATCAGATAATCTGGCAGCCGCAAT 499
Query 527 AGCTGAAGAAGTGACTCGGGATTCAATAGACAGAATTGTCATTGGAGGCTCATCCCGTAG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGCTGAAGAAGTGACTCGGGATTCAATAGACAGAATTGTCATTGGAGGCTCATCCCGTAG 559
Query 587 TTTTTTCTCAAGGAAAGCTGATATTTGCTCGGTGATATCAGCTTTGATGCCAAACTTTTG 646
|||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 560 TTTTTTCTCAAGGAAAGCTGATATGTGCTCGGCGATATCAGCTTTGATGCCGAACTTTTG 619
Query 647 TACAGTCTATGTTGTTTCAAAAGGTAAATTGTCATGCGTCCGACCATCAGACTCAGACGG 706
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 620 TACAGTCTATGTTGTTTCAAAAGGAAAATTGTCATGCGTCCGACCATCAGACTCAGACGG 679
Query 707 AAATGCTACTATAAGAGAAGATGGTAGTGAGAGAACAAATTCTTCAAGCGGTTCTTCTGG 766
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 680 AAATGCTACTATAAGAGATGATGGTAGTGAGAGAACTAATTCTTCAAGCGGTTCTTCTGG 739
Query 767 TCCCACCTCAGATTCATCAGATGTAATGTCAAGTGCGCATGACTCTCAATCTCGTCCTCT 826
||||| | | ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 740 TCCCA---C-----C-TCAGATGTAATGTCAAGTGTGCATGACTCTCAATCTCGTGCTCT 790
Query 827 ATCCCTTCCGGTCAGGAGAATGCAACATTTCCCTGCAATTGCAGGACAGGCATCAGTTCC 886
||||||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||
Sbjct 791 ATCCCTTCCGGTCAGGAGAATGCAAAATTTCCCTACAATTGCAAGACAAGCATCAGTTCC 850
Query 887 AATGGAAACGAGTTCTGTTGGCTCGGATGAAACCAGGTGCATGTCTTTGGATGCAGAGGA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AATGGAAACGAGTTCTGTTGGCTCGGATGAAACCAGGTGCATGTCTTTGGATGCAGAGGA 910
Query 947 AGCTAGAGATGTTTCAAGTATCAATAGAAGCAGCACAGATACTACATCACGTTGGACTCC 1006
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 911 AGCTAGAGATGTTTCAAGTATCAATAGAAGCAGCACGGATACTACATCACGTTGGACTCC 970
Query 1007 TCGGCGTAGAGATTATGAGGAGAGAAAAGAAGCTATGAGTTCTTCTTCGAGCAACCGTGA 1066
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 971 TCGGCTTAGAGATTACGAGGAGAGAAAAGAAGCTATGAGTTCTTCTTCTAGCAACCGTGA 1030
Query 1067 ATACGGGAATTTTGGTACTAGGTTTAGTTGGAGTGGCATGGGTGTCGATACTACACACTC 1126
|||||||||| |||||| ||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct 1031 ATACGGGAATATTGGTAGTAGATTTAGTTGGACTGGCATGGGGGTCGATACTACGCACTC 1090
Query 1127 TCGGGCTTCTCAACAAGCTTCCAACATGTCTGATGCTCTAAGTGAACAATCCTATACAGA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1091 TCGGGCTTCTCAACAAGCTTCCAACATGTCTGATGCTCTAAGTGAACAATCTTATACAGA 1150
Query 1187 CAACCAGGTAAACCTAAACTTTGAGGTTGAGAAGTTGAGAGCTGAGCTTAGACACGTTCA 1246
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CAGCCAGGTAAACCTAAACTTTGAGGTTGAGAAGTTGAGAGCTGAGCTTAGACACGTTCA 1210
Query 1247 AGAAATGTATGCTGTGGCTCAAACCGAAACCTTTGATGCTTCTCGAAAGCTTGGTGAACT 1306
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1211 AGAAATGTATGCTATGGCTCAAACCGAAACCTTTGATGCTTCTCGAAAGCTTGGTGAGCT 1270
Query 1307 TAACCAACGTCGGTTAGAAGAAGCCATAAAGCTTGAAGAGCTAAAGCTGAAGGAGTATGA 1366
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1271 TAACCAACGTCGGTTAGAAGAAGCCATAAAGCTTGAAGAGCTAAAACTGAAGGAGTACGA 1330
Query 1367 AGCTCGAGAGTTAgcagaaaaggaaaagcagaattttgagaaggcaaggagagatgcaga 1426
|||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 1331 AGCTCGGGAGTTAGCAGAAAGGGAAAAGCAGAATGTTGAGAAGGCGAGGAGAGATGCAGA 1390
Query 1427 gagcatgagagaaagagcagagagagaaattgcgcagagaagagaaGCCGAAAGGAAATC 1486
|| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1391 GAACATGAGAGAAAGAGCGGAGAGAGAAATTGCGCAGAGAAGAGAAGCCGAGAGGAAATC 1450
Query 1487 CGCACGTGATACTAAAGAGAAAGAGAAGCTCGAGGGCACTCTCGGGTCTCCTCAGCTGCA 1546
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1451 CGCACGTGATACTAAAGAGAAAGAGAAGCTCGAGGGCACTCTCGGATCTCCTCAGCTTCA 1510
Query 1547 ATATCAGCACTTTGCTTGGGAAGAAATTATGGCTGCCACTTCATCATTCTCAGAAGAACT 1606
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1511 ATATCAGCACTTCGCTTGGGAAGAAATTATAGCTGCCACTTCATCATTCTCAGAAGAGCT 1570
Query 1607 GAAGATCGGAATGGGAGCTTACGGAGCTGTTTACAAGTGTAATCTGCATCATACAACTGC 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 GAAGATCGGAATGGGAGCTTACGGAGCTGTTTACAAGTGTAATCTGCATCATACAACTGC 1630
Query 1667 AGTTGTCAAAGTTTTGCAGTCAGCTGAAAATCAACTTTCCAAACAATTCCAACAAGAGCT 1726
|| ||||||||||||||| || ||||||| || || |||||||||||||||||||||||
Sbjct 1631 AGCTGTCAAAGTTTTGCATTCCGCTGAAAGTCGGCTATCCAAACAATTCCAACAAGAGCT 1690
Query 1727 CGAAATCTTGAGCAAGATTAGGCATCCACATTTGGTTCTCCTTCTAGGAGCGTGCCCGGA 1786
||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1691 CGAAATCTTTAGCAAGATTCGGCACCCACACTTGGTTCTCCTTCTAGGAGCGTGCCCGGA 1750
Query 1787 GCAAGGTGCTTTAGTTTATGAGTACATGGAAAACGGTAGCTTGGAGGACAGACTTTTCCA 1846
|||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 1751 GCAAGGAGCTTTAGTTTATGAATATATGGAAAACGGTAGCTTGGAGGATAGACTGTTCCA 1810
Query 1847 GGTCAACAACAGTCCGCCACTCCCGTGGTTTGAGCGGTTTAGGATTGCTTGGGAAGTTGC 1906
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1811 GGTCAACAACAGTCCGCCACTCCCGTGGTTTGAGAGGTTTAGGATAGCTTGGGAAGTCGC 1870
Query 1907 AGCGGCTCTTGTCTTCCTCCACAAATCAAAGCCTAAACCAATCATTCACCGTGATCTTAA 1966
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 AGCAGCTCTTGTCTTCCTCCACAAATCAAAGCCTAAACCAATCATTCACCGTGATCTTAA 1930
Query 1967 ACCTGCAAACATCTTACTTGATCACAACTTTGTCAGCAAAGTTGGAGACGTGGGACTCTC 2026
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 1931 ACCTGCAAACATCTTACTTGATCAAAACTTTGTCAGCAAAGTTGGAGATGTCGGACTTTC 1990
Query 2027 AACGATGGTTCAAGTCGATCCTCTATCAACTAAATTCACTATATACAAACAAACAAGCCC 2086
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1991 AACGATGGTTCAAGTCGATCTTTTATCAACTAAATTCACTATATACAAACAAACAAGCCC 2050
Query 2087 CGTGGGAACGTTATGCTATATTGATCCGGAATATCAGCGCACTGGAAGGATATCATCGAA 2146
||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 2051 CGTGGGAACATTATGCTATATTGATCCGGAATATCAACGTACTGGAATGATATCATCGAA 2110
Query 2147 ATCAGATATCTACTCCTTTGGAATGATTCTTCTTCAGCTTCTCACAGCAAAACCTGCTAT 2206
||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 2111 ATCAGATGTCTATTCCTTTGGAATGATTGTTCTTCAGCTTCTCACGGCAAAACCTGCTAT 2170
Query 2207 TGCATTGACACATTTCGTTGAGAGCGCAATGGATAGTAATGATGAGTTCCTTAAGATCTT 2266
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2171 TGCATTGACACATTTCGTTGAGAGCGCAATGGATAGTAATGATGAGTTCCTCAAGATCTT 2230
Query 2267 AGATCAGAAAGCCGGTAACTGGCCGATTGAAGAAACCCGGGAATTGGCCGCATTAGCTTT 2326
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2231 AGATCAGAAAGCGGGTAACTGGCCGATTGAAGAAACCCGGGAATTGACCGCATTAGCTTT 2290
Query 2327 GTGTTGTACAGAGCTACGCGGGAAAGATAGACCTGATTTGAAAGATCAGATTCTTCCAGC 2386
|||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||| ||
Sbjct 2291 GTGTTGTACAGAGCTACGCGGGAAAGATAGGCCTGATTTAAAAAACCAGATTCTTCCGGC 2350
Query 2387 GCTCGAAAACCTAAAGAAAGTAGCTGAAAAGGCAAGGAACTCATTTTCCGGCGTATCGAC 2446
||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2351 GCTAGAAAACCTGAAGAAAGTAGCTGAAAAGGCAAGGAACTCACTTTCGGGCGTATCGAC 2410
Query 2447 ACAGCCTCCCACTCATTTCATCTGCCCATTACTTAAGGACGTGATGAACGAGCCGTGCGT 2506
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2411 ACAGCCTCCCACTCATTTCATCTGCCCATTACTAAAGGACGTGATGAACGAGCCGTGCGT 2470
Query 2507 TGCAGCAGACGGATACACATACGACCGTCATGCGATAGAGGAGTGGCTTAAGGAGCACAA 2566
|||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| |
Sbjct 2471 TGCAGCTGACGGATACACATATGACCGTGGTGCGATAGAGGAGTGGCTTGAGGAGCACGA 2530
Query 2567 CACATCGCCGATGACGGATTCACCGTTGCATAGCAAGAACCTTTTACCCAATTATACTCT 2626
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 2531 CACATCGCCGATGACGGATTCACCGTTGCATAGCAAGAACCTATTGCCAAATTATACTCT 2590
Query 2627 TTACACAGCCATCATGGAATGGAGGTCTACACGATAGTA 2665
||||||||| |||||||||||||||||||||||||||||
Sbjct 2591 TTACACAGCTATCATGGAATGGAGGTCTACACGATAGTA 2629
> Ahg949672 jgi|Araly1|949672|scaffold_801559.1
Length=2482
Score = 833 bits (451), Expect = 0.0
Identities = 979/1232 (79%), Gaps = 43/1232 (3%)
Strand=Plus/Plus
Query 1445 agagagagaaattgcgcagagaagagaaGCCGAAAGGAAATCCGCAC-GTGATA-CTAAA 1502
||||||||| | || || |||||||||||||| | ||| | || | |||| | | |||
Sbjct 1229 AGAGAGAGACACTGAACAAAGAAGAGAAGCCGAGATAAAAGCAGC-CTGTGA-AGCCAAA 1286
Query 1503 GAGAAAGAGAAGCTCGAGGGCA---CTCTCG-GGTCTCCTCAGCTGCAATATC-AGCACT 1557
||||| |||||||| || | | | || | || ||||| |||||||||| | || | |
Sbjct 1287 GAGAAGGAGAAGCTTGAAGAAATTTCCCTAGTGG-CTCCTAAGCTGCAATACCAAG-AGT 1344
Query 1558 TTGCTTGGGAAGAAATTATGGCTGCCACTTCATCATTCTCAGAAGAACTGAAGATCGGAA 1617
| ||||||||||||| || | || |||||||| ||||| ||||| || ||||||||||
Sbjct 1345 TCACTTGGGAAGAAATCATCACCGCAACTTCATCTTTCTCTGAAGATCTAAAGATCGGAA 1404
Query 1618 TGGGAGCTTACGGAGCTGTTTACAAGTGTAATCTGCATCATACAACTGCAGTTGTCAAAG 1677
||||||||||||| | |||||||||||| |||||||||||||||| ||| | ||||||||
Sbjct 1405 TGGGAGCTTACGGGGATGTTTACAAGTGCAATCTGCATCATACAATTGCCGCTGTCAAAG 1464
Query 1678 TTTTGCAGTCAGCTGAAAATCA-ACTTTCCAAACAATTCCAACAAGAGCTCGAAATCTTG 1736
||||||| || ||||||| | | || ||||| |||||| | ||||||||||||||||||
Sbjct 1465 TTTTGCATTCCGCTGAAAGT-AGTCTATCCAAGCAATTCGATCAAGAGCTCGAAATCTTG 1523
Query 1737 AGCAAGATTAGGCATCCACATTTGGTTCTCCTTCTAGGAGCGTGCCCGGAGCAAGGTGCT 1796
|||||||| ||||| ||||| |||||||||||||||||||| || || || | || |||
Sbjct 1524 AGCAAGATCAGGCACCCACACTTGGTTCTCCTTCTAGGAGCATGTCCTGAACGCGGCGCT 1583
Query 1797 TTAGTTTATGAGTACATGGAAAACGGTAGCTTGGAGGACAGACTTTTCCAGGTCAACAAC 1856
|||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 1584 CTAGTCTATGAGTACATGGAAAACGGTAGCTTGGAAGATAGACTATTCCAAGTCAACAAT 1643
Query 1857 AGTCCGCCACTCCCGTGGTTTGAGCGGTTTAGGATTGCTTGGGAAGTTGCAGCGGCTCTT 1916
||| ||| |||||||||||| ||| || || || ||||||||| ||| | || |||
Sbjct 1644 AGTGAACCAATCCCGTGGTTTGTGCGATTCAGAATCATTTGGGAAGTCGCATCAGCGCTT 1703
Query 1917 GTCTTCCTCCACAAATCAAAGCCTAAACCAATCATTCACCGTGATCTTAAACCTGCAAAC 1976
|| ||||||||||||||||| || | ||||||||| ||||| ||||| ||||| || |||
Sbjct 1704 GTTTTCCTCCACAAATCAAAACCGACACCAATCATCCACCGCGATCTGAAACCCGCGAAC 1763
Query 1977 ATCTTACTTGATCACAACTTTGTCAGCAAAGTTGGAGACGTGGGACTCTCAACGATGGTT 2036
||||| ||||| |||||||||||||||||||| ||||| || || ||||| || ||| |
Sbjct 1764 ATCTTGCTTGACCACAACTTTGTCAGCAAAGTAGGAGATGTTGGTCTCTCCACAATGATC 1823
Query 2037 CAAGTCGATCC-TCTATCAACTAAATTCACTATATACAAACAAACAAGCCCCGTGGGAAC 2095
||||||||||| | | | ||| |||||||| || |||||||| ||||| |||||||||||
Sbjct 1824 CAAGTCGATCCAT-TGTTAACCAAATTCACAATGTACAAACAGACAAGTCCCGTGGGAAC 1882
Query 2096 GTTATGCTATATTGATCCGGAATATCAGCGCACTGGAAGGATATCATCGAAA-TCAGATA 2154
|||||||||||| ||||| |||||||| || || ||||||||||| || ||| |||||
Sbjct 1883 GTTATGCTATATCGATCCTGAATATCAACGAACCGGAAGGATATC-TCCAAAATCAGACG 1941
Query 2155 TCTACTCCTTT-GGAATGATTC-TTCTTCAGCTTCTCACAGCAAAACCTGCTATTGCATT 2212
| || | |||| |||||||| | |||| ||||||||||| || |||| ||||| ||| |
Sbjct 1942 TTTA-TGCTTTAGGAATGAT-CATTCTGCAGCTTCTCACCGCTCAACCGGCTATGGCACT 1999
Query 2213 GACACATTTC-GTTGAGAGCGCAATGGATAGTAATGATGA-GTTC--CT--TA-AGAT-C 2264
|||| || | || || | || ||||| | || |||| | | || || |||| |
Sbjct 2000 GACATATA-CAGTAGAAATAGCCATGGAGAACAACAATGACGATGAGCTAATACAGATTC 2058
Query 2265 TTAGATCAGAAAGCCGGTAACTGGCCGATTGAAGAAACCCGGGAATTGGCCGCATTAGCT 2324
|| ||| | ||||| ||||| ||||| || ||||||||||| |||| ||||| |||||
Sbjct 2059 TT-GATAAAAAAGCGGGTAATTGGCCAATAGAAGAAACCCGCCAATTAGCCGCTTTAGCG 2117
Query 2325 TTGTGTTGTACAGAGCTACGCGGGAAAGATAGACCTGATTTGAAAGATCAGATTCTTCCA 2384
| | |||||||||||| || | ||||| || ||||||||| |||||||||||||||||
Sbjct 2118 CTCTATTGTACAGAGCTCCGTGCTAAAGACAGGCCTGATTTGGAAGATCAGATTCTTCCA 2177
Query 2385 GCGCTCGAAAACCTAAAGAAAGTAGCTGA-AAAGGCAAGGAACTCATTTTCCG--GCGT- 2440
| | || | | | |||||||||||||| |||| |||| ||||| |||||| |||
Sbjct 2178 GTATTGGAGAGCTTGAAGAAAGTAGCTGACAAAG-CAAGAAACTCGCTTTCCGCTGCGCC 2236
Query 2441 ATCGACACAGCCTCCCACTCATTTCATCTGCCCATTACTTAAGGACGTGATGAACGAGCC 2500
| | || | ||||| | ||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2237 AA-GTCA-A-CCTCCAAGTCATTTCATCTGCCCATTACTTAAGGATGTGATGAAGGAGCC 2293
Query 2501 GTGCGTTGCAGCAGACGGATACACATACGACCGTC-ATGCGATAGAGGAGTGGCTTAAGG 2559
|| |||| || || || ||||| || ||||| | || |||||||||||| | ||
Sbjct 2294 ATGTATTGCGGCTGATGGGTACACGTATGACCGGAGA-GCCATAGAGGAGTGGATGGAGA 2352
Query 2560 AGCACAACACATCGCCGATGACGGATTCACCGTTGC-ATAGCAAGAACCTTTTACCCAAT 2618
| ||| || |||||| |||| |||| ||||| | | | | ||||||||| ||||||
Sbjct 2353 ACCACCGGACGTCGCCGGTGACTAATTCGCCGTTACGAAA-CGTGAACCTTTTGCCCAAT 2411
Query 2619 TATACTCTTTACACAGCCATCATGGAATGGAG 2650
| || |||||| |||||||| | ||||||||
Sbjct 2412 CACACCCTTTACGCAGCCATCGTTGAATGGAG 2443
> Ahg916746 jgi|Araly1|916746|Al_scaffold_0008_1497
Length=2565
Score = 758 bits (410), Expect = 0.0
Identities = 984/1257 (78%), Gaps = 55/1257 (4%)
Strand=Plus/Plus
Query 1427 gagcatg-agagaaagagcagagagagaaattgcgcagagaagagaaGCCGAAAGGAAAT 1485
||||| | |||| ||| | |||||||||| ||| || ||||||||||| || | ||||
Sbjct 1315 GAGCA-GAAGAG-AAGGGAAGAGAGAGAAGCTGCACAAAGAAGAGAAGCTGAGATGAAAG 1372
Query 1486 CCGCACGTGATA-CTAAAGAGAAAGAGAAGCTCG-AG--GGCACTCTCG-GGTCTCCTCA 1540
| | | ||| | | |||||||| |||||||| | || | | || | || ||||| |
Sbjct 1373 CAACCCATGA-AGCCAAAGAGAAGGAGAAGCTTGAAGAAAGTTCCCTTGTGG-CTCCTAA 1430
Query 1541 GCTGCAATATC-AGCACTTTGCTTGGGAAGAAATTATGGCTGCCACTTCATCATTCTCAG 1599
||||||||| | || | || | ||||||||||| || | || |||||||||||||| |
Sbjct 1431 GCTGCAATACCAAG-AGTTCACGTGGGAAGAAATCATTACCGCAACTTCATCATTCTCTG 1489
Query 1600 AAGAACTGAAGATCGGAATGGGAGCTTACGGAGCTGTTTACAAGTGTAATCTGCATCATA 1659
|||| | ||||| ||||||||||||||||| | ||||||||| || |||||||||||||
Sbjct 1490 AAGATTTAAAGATTGGAATGGGAGCTTACGGGGATGTTTACAAATGCAATCTGCATCATA 1549
Query 1660 CAACT-GCAGTTGTCAAAGTTTTGCAGTCAGCTGAAAATCA-ACTTTCCAAACAATTCCA 1717
||| | || | ||||||||||||||| | |||||||| | | || ||||| |||||| |
Sbjct 1550 CAA-TCGCCGCTGTCAAAGTTTTGCATTTAGCTGAAAGT-AGTCTATCCAAGCAATTCGA 1607
Query 1718 ACAAGAGCTCGAAATCTTGAGCAAGATTAGGCATCCACATTTGGTTCTCCTTCTAGGAGC 1777
|||||||||||||||||||||||||| ||||| || || |||||||| |||||||||||
Sbjct 1608 TCAAGAGCTCGAAATCTTGAGCAAGATCAGGCACCCGCACTTGGTTCTTCTTCTAGGAGC 1667
Query 1778 GTGCCCGGAGCAAGGTGCTTTAGTTTATGAGTACATGGAAAACGGTAGCTTGGAGGACAG 1837
|| || ||||| || ||| |||| |||||||||||||||||||||||| |||| || ||
Sbjct 1668 ATGTCCTGAGCACGGCGCTCTAGTCTATGAGTACATGGAAAACGGTAGCCTGGAAGATAG 1727
Query 1838 ACTTTTCCAGGTCAACAACAGTCCGCCACTCCCGTGGTTTGAGCGGTTTAGGATTGCTTG 1897
||| ||||| |||||| | |||| ||| |||||||||| | |||||| || || |||||
Sbjct 1728 ACTGTTCCAAGTCAACGATAGTCAACCAATCCCGTGGTTCGTGCGGTTCAGAATCGCTTG 1787
Query 1898 GGAAGTTGCAGCGGCTCTTGTCTTCCTCCACAAATCAAAGCCTAAACCAATCATTCACCG 1957
|||||| ||| | || ||||| ||||||||||||||||| || | ||||||||| |||||
Sbjct 1788 GGAAGTGGCATCAGCACTTGTTTTCCTCCACAAATCAAAACCGACACCAATCATCCACCG 1847
Query 1958 TGATCTTAAACCTGCAAACATCTTACTTGATCACAACTTTGTCAGCAAAGTTGGAGACGT 2017
|||||||| || || |||||||| ||| |||||||||||||||||||||| ||||| ||
Sbjct 1848 CGATCTTAAGCCCGCCAACATCTTGCTTAATCACAACTTTGTCAGCAAAGTAGGAGATGT 1907
Query 2018 GGGACTCTCAACGATGGTTCAAG-T--CGATCC-TCTATCAACTAAATTCACTATATACA 2073
|| || || || ||| | |||| | | | || | | ||||| |||||||| || ||||
Sbjct 1908 TGGTCTTTCCACAATGATCCAAGCTGCCAACCCAT-TGTCAACCAAATTCACCATGTACA 1966
Query 2074 AACAAACAAGCCCCGTGGGAACGTTATGCTATATTGATCCGGAATATCAGCGCACTGGAA 2133
|||| ||||||||||||||||||||||||||||| ||||| |||||||| | || ||||
Sbjct 1967 AACAGACAAGCCCCGTGGGAACGTTATGCTATATCGATCCCGAATATCAAAGAACCGGAA 2026
Query 2134 GGATATCATCGAAA-TCAGATATCTACTCCTTT-GGAATGATTC-TTCTTCAGCTTCTCA 2190
||||||| || ||| ||||| |||| | |||| |||||||| | |||| ||||||||||
Sbjct 2027 GGATATC-TCCAAAATCAGACGTCTA-TGCTTTCGGAATGAT-CATTCTGCAGCTTCTCA 2083
Query 2191 CAGCAAAACCTGCTATTGCATTGACACATTTC-GTTGAGAGC-GCAATGGATAGTAATGA 2248
| | ||| ||||| ||| ||||| || | || || | | || ||||| | || ||
Sbjct 2084 CTGGTCAACAGGCTATGGCACTGACATATA-CAGTAGAAA-CAGCCATGGAGAACAACGA 2141
Query 2249 -T--GA-GTTCCT--TA-AGAT-CTTAGATCAGAAAGCCGGTAACTGGCCGATTGAAGAA 2300
| || | | | || |||| ||| ||||| ||||| ||||||||||| || ||||||
Sbjct 2142 CTACGACGAGC-TAATACAGATTCTT-GATCAAAAAGCGGGTAACTGGCCAATCGAAGAA 2199
Query 2301 ACCCGGGAATTGGCCGCATTAGCTTTGT-GTTGTACAGAGCTACGCGGGAAAGATAGACC 2359
||| || |||| || || ||||| | || |||||||||| || ||||| || ||
Sbjct 2200 ACCAGGCAATTAGCTGCTTTAGCACTCCAGT-GTACAGAGCTCCGTTCTAAAGACAGGCC 2258
Query 2360 TGATTTGAAAGATCAGATTCTTCCAGCGCTCGAAAACCTAAAGAAAGTAGCTGA-AAAGG 2418
||||||| |||||||||||||||||| | || | | |||||||||||||||| ||||
Sbjct 2259 TGATTTGGAAGATCAGATTCTTCCAGTATTGGAGAGCTTAAAGAAAGTAGCTGATAAAG- 2317
Query 2419 CAAGGAACTCATTTTCCG--GCGT-ATCGACACAGCCTCCCA-CTCATTTCATCTGCCCA 2474
|||| ||||| ||||| ||| | | || | ||||| | | |||||||||||||||
Sbjct 2318 CAAGAAACTCGCTTTCCACAGCGCCAA-GTCA-A-CCTCCAAGC-CATTTCATCTGCCCA 2373
Query 2475 TTACTTAAGGACGTGATGAACGAGCCGTGCGTTGCAGCAGACGGATACACATACGACCGT 2534
||||||||||| |||||||| ||||| || |||| || || || ||||| || |||||
Sbjct 2374 TTACTTAAGGATGTGATGAAGGAGCCATGTATTGCGGCTGATGGGTACACTTATGACCGG 2433
Query 2535 C-ATGCGATAGAGGAGTGGCTTAAGGAGCACAACACATCGCCGATGACGGATTCACCGTT 2593
| || |||||||||||| | || | ||| || || ||| |||| || || || ||
Sbjct 2434 AGA-GCCATAGAGGAGTGGATGGAGAACCACCGGACGTCACCGGTGACTGAGTCGCCTTT 2492
Query 2594 GCATAGCAAGAACCTTTTACCCAATTATACTCTTTACACAGCCATCATGGAATGGAG 2650
|| | | || |||||| |||||| | ||||| ||| |||||||| | ||||||||
Sbjct 2493 ACAAAACGTGAGCCTTTTGCCCAATCACACTCTGTACGCAGCCATCGTTGAATGGAG 2549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106881227470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5