BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25180.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492316 jgi|Araly1|492316|fgenesh2_kg.7__1749__AT4G25180.1 1378 0.0
> Ahg492316 jgi|Araly1|492316|fgenesh2_kg.7__1749__AT4G25180.1
Length=1093
Score = 1378 bits (746), Expect = 0.0
Identities = 977/1085 (90%), Gaps = 30/1085 (3%)
Strand=Plus/Plus
Query 126 AAGTCTAAGCGGAGGTTCCAACCAA-ATCCTCCGAGGCCTTCTCGCCGTCTTCCGATCGC 184
||||| |||||||||||||| |||| | ||||||| |||||||| ||| ||||| ||
Sbjct 28 AAGTCGAAGCGGAGGTTCCAGCCAAGA-CCTCCGAAGCCTTCTCTCCG---GCCGATTGC 83
Query 185 TCCAACCTCAAACACCGAAGCTGA-G--GAGGATGAAGAGAATATAAAAGCATCTCGCCA 241
|||||| ||||||||||||||||| | ||||| |||||||||| ||||||| |||| ||
Sbjct 84 TCCAACATCAAACACCGAAGCTGAGGCTGAGGAGGAAGAGAATAAAAAAGCAGCTCGACA 143
Query 242 ATTTGACAGACGTATC-G-TC-GG-C--AGGAGACCCAAAACCGAAACGAAAGCTTCTTC 295
||| | || ||||||| | | || | ||||||||||||||||||||||||||||||||
Sbjct 144 ATTAGCCAAACGTATCGGCACTGGCCAGAGGAGACCCAAAACCGAAACGAAAGCTTCTTC 203
Query 296 TCCTGAAGTTGCATTCCAACCAAGCTTGTCACCACTTGCAATAAGGTCCTTTGGTGTTCC 355
|||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||
Sbjct 204 TCCTGAAGTTGCATTCCAACCAAGCTTGTCGTCACTTGCAATAAGGTCGTTTAGTGTTCC 263
Query 356 TAAAGAAGATGACAAGCCCAATTCTGATGTTA-ATCCGTCTTCTCCTGCTAGTATTCTTC 414
|||||||||||||||||| | |||||||| || |||| |||||| ||||| |||||||||
Sbjct 264 TAAAGAAGATGACAAGCCTAGTTCTGATG-TATATCCCTCTTCTTCTGCTGGTATTCTTC 322
Query 415 CTGCTGTTTCGTCTGTTACTGCTGCCCAAGAAGATGGAGAAGAGGTTCATAATTTTGTTA 474
| ||||||||||| ||||| | |||||||||||| ||| |||||||||||||| ||||
Sbjct 323 ATCCTGTTTCGTCTATTACT--T-CCCAAGAAGATGAAGAGGAGGTTCATAATTTGGTTA 379
Query 475 CAAGAACTGGGGATGACTACGTTGAACCTTGGGATTATAGAAACTCCTACTATCCTACTG 534
||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 380 CAAGACCTGGTGAAGACTACGTTGAACCTTGGGATTATAGAAACTCATACTATCCTACCG 439
Query 535 TTCTTCCTTTGAGAAAGCCTAACTCTGGTGATATAGAACTTCTTGACCAGGAGGAATTTG 594
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 440 TTCTTCCTTTGAGAAAGCCTAACTCTGGTGACCCAGAACTTCTTGACCAGGAGGAATTTG 499
Query 595 GGGAGGTGGCTAAAAACCGTGATTATGATGAGAACACCATCAACTCCGCAGAAGAACTCG 654
|||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 500 GGGAAGTGGCTAAACACCGTGATTATGAGGAGAACACCATCAACTCAGCAGAAGAACTCG 559
Query 655 GTCTGACATCGGTGCAACACAGCAAAAAACAGATGTTTATCTTTAAGATCCCAGACTGTC 714
|||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 560 GTCTGACATCGGTGCAACACTGCAAAAAACAGATGTTTTTCTTTAAGATCCCGGACTGTC 619
Query 715 TCCCTGTAGTGAAGCAAACGACAGGAGCAACCACCAAGAGATCGGTACGGGAGTATAGTT 774
|||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 620 TCCCTGTAATGAAGCAATCGACAGGAGCAACCACCAAGAGATCAGTACGGGAGTATAGTT 679
Query 775 CAGGGATAAGCAACCCTTTTGAAGGTTTACCAGAGGGATTCATGGGCAAAATGCTGGTTT 834
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CAGGGAGAAGCAACCCTTTTGAAGGTTTACCAGAGGGATTCATGGGCAAAATGCTGGTTT 739
Query 835 ACAAGAGCGGTGCTGTCAAGTTGAAAGTTGGAGATGCCCTCTTTGATGTCTCGCCAGGTC 894
|||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||
Sbjct 740 ACAAGAGCGGTGCTGTCAAGTTGAAACTTGGAGATGTCCTCTTTGATGTTTTACCAGGTC 799
Query 895 CAGGTACAAAAATCCCTAATGATGTGGTAGCAATAGACATCAAAGGGAGGAACTGCAGTC 954
|| | ||||| ||| |||||| |||| |||||| |||| |||||||||||||||| |||
Sbjct 800 CAAATGCAAAATTCCATAATGACGTGGCAGCAATCGACACCAAAGGGAGGAACTGCTGTC 859
Query 955 GCATTGGTTCTTCAGCGAAGTTTGTTACTGTTACTCCCGATGTTGAGTCTCTTTTGAACC 1014
|||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct 860 GCATTGGTTCTTCAGCCAAGTTTGTGACTGTTACTCCCGATGTTGAGGCTCTTTTGAACT 919
Query 1015 CTGCTTCAGACATGGAAACACAGAAGTGAAGGTTGCTCTGGAAATAGCCGGTCCTGTTCA 1074
|||||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||
Sbjct 920 CTGCTTCAGACATGGAAACACACAAGTGAAGGTTGTTCTGGATATAGCCGGTCTTGTTCA 979
Query 1075 TACAAGGATGTGAAAAAGCGTAGTATTGACCACTTAGATTCTGTATCTACAAACTAATCT 1134
|||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 980 TACAAGGATGTGAAAA-GCGTAGTATTGACCACTTAGATTCTGTAACTACAACCTAATCT 1038
Query 1135 TCAACTATGATCGTaaaaaaaCTCTTCTTGCCTCCTTGGTGTCTTCTTTTGTAATAAGAG 1194
||| | ||||||||||||| ||||||||| | | | | |||||| |||| ||||||
Sbjct 1039 TCAGCCATGATCGTAAAAA--CTCTTCTTG--T--T-G-T--CTTCTTCTGTAGTAAGAG 1088
Query 1195 ATTCA 1199
|||||
Sbjct 1089 ATTCA 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5