BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25190.2 Length=1479 Score E Sequences producing significant alignments: (Bits) Value Ahg492315 jgi|Araly1|492315|fgenesh2_kg.7__1748__AT4G25190.2 1820 0.0 > Ahg492315 jgi|Araly1|492315|fgenesh2_kg.7__1748__AT4G25190.2 Length=1398 Score = 1820 bits (985), Expect = 0.0 Identities = 1209/1315 (92%), Gaps = 23/1315 (2%) Strand=Plus/Plus Query 38 TCATATAGTTAACCGTCGTCATATATTAAAGAAGAAAATGG-------C--AACCACCGG 88 |||||||||||| |||||||| ||||||||||||||||||| | ||||||||| Sbjct 1 TCATATAGTTAATCGTCGTCAAATATTAAAGAAGAAAATGGCAACCACCAAAACCACCGG 60 Query 89 TCGGAGACTCCGTCCTCCATCGCCCAATAATAACCGGAGCCGGACTATAAGCTCTTCAAT 148 |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || Sbjct 61 TCGGAGACTCCGTCCTCCGTCGCCCAATATTAACCGGAGCCGGACTATAAGCTCTTCGAT 120 Query 149 CTCTCTCCCAGTGTCCTTAAACGCCTCGTTATCGTCTTCTACTTCTTCATCTTCTTCCTC 208 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 121 CTCTCTCCCAGTGTCCTTAAACGCCTCGTTATCGTCTTCTACTTCTTCCTCCTCTTCCTC 180 Query 209 TTCGCCTTCCAATTCAAGCAA-ACGAGTGATGATAACCAGATCACAGTCCACAACAAGAT 267 |||||| |||||||||||||| | |||||||||||||||||||||| || ||||| |||| Sbjct 181 TTCGCCATCCAATTCAAGCAAGA-GAGTGATGATAACCAGATCACACTCTACAACGAGAT 239 Query 268 CCTCCAGACCCATCGGATCATCCGACTCTAAATCCGGCGAGAACATAATCCCGGCGAGAA 327 | ||||| |||| |||||||||| || | ||||||||||| || |||||||||||||||| Sbjct 240 CATCCAGGCCCACCGGATCATCCAACCCCAAATCCGGCGAAAATATAATCCCGGCGAGAA 299 Query 328 ACAGCGCATCAAGATCTCAAGAGATAAACAACGGTAGAAGCAGAGAGTCGTTTGCTCGGT 387 ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| || Sbjct 300 ACAGCGCGTCAAGATCTCACGAGATAAACAACGGTAGAAGCAGAGAGGCGTTTGCTCAGT 359 Query 388 ACTTGGAGCAACGT-ACGCGTGGTAGTCCTCGTAGTAACGCTTCATCGAGAGGGGTAAAG 446 |||| || |||||| | ||||||||||||||||| |||||||||||| ||||||||||| Sbjct 360 ACTTAGATCAACGTGA-GCGTGGTAGTCCTCGTAATAACGCTTCATCTAGAGGGGTAAAA 418 Query 447 CCGGGAGCCAGCTCACCATCGGCGTGGGCGTTGT-CTCCTGGAAGACTTTCGACTATGAA 505 |||||||| ||||||||||||||||||||||||| || | || ||| ||||||| ||||| Sbjct 419 CCGGGAGCGAGCTCACCATCGGCGTGGGCGTTGTCCT-CAGGGAGAGTTTCGACGATGAA 477 Query 506 GACGCCTCTGTCCAGCTCAGCTCCGACGACTTCAATGTGCATGACGCCGCCTGAGTCACC 565 ||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| Sbjct 478 GACATATCTGTCCAGCTCAGCTCCGGCGAATTCAATGTGCATGACGCCGCCTGAATCACC 537 Query 566 CGTAAGCAAGGCCAAGATAAGAAGCGGTGGCGGTGGAGCGGTGGCAGGAGTTTTGAAGTA 625 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 538 GGTAAGCAAGGCCAAGATAAGAAGCGGTGGCGGTGGAGCTGTGGCCGGAGTTTTGAAGTA 597 Query 626 CTTCATGGCGCAGAAGAAAGTATCTCCGGTACAAGAGGAGGATTATCACCGGTTTAGGAT 685 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 598 CTTCATGGCGCAGAAGAAAGTATCTCCGGTCCAAGAGGAGGATTATCACCGGTTTAGGGT 657 Query 686 TTTTCAAAACAGATTACTTCAATGGAGGTTTGTTAACGCAAGAACTGAAGCCACTATGGC 745 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTTGCAAAACAGATTACTTCAATGGAGGTTTGTTAACGCAAGAACTGAAGCCACTATGGC 717 Query 746 -AAACCTTAAGATCAACGTTGAGGATCAGTTGTTTTGGGTTTGGCTTAGGATATACAAAA 804 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 718 TAAAC-TTAAGATCAACGTTGAGGATCAGTTGTTTTGGGTTTGGCTAAGGATATACAAAA 776 Query 805 TGAGGAACTACGTTGTAGAAAATTTGATTGAAATTCAAAGGCTCCGTCAAGATATCAAAG 864 ||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||| Sbjct 777 TGAGGAACTACGTAGTGGAAAATTTGATTGAAGTTCAAAGGCTCCGTCAAGAAATCAAAC 836 Query 865 TACGTGAAGTTCTCAGCCTCCAAATGCCTTTACTTAATGAGTGGTCAAAAATAGACGCAA 924 || ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| Sbjct 837 TAGGTGAAGTTCTCAGCCTCCAAATGCCTTTACTTAATGATTGGTCAAAATTAGAAGCAA 896 Query 925 AAAACTCCGAAGCGTTGAGCAAGCTAACTCGAAAACTCCATGCTTTGTCTGTCCGATTAC 984 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 897 AAAACTCCGAAGCATTGAGCAAGCTAACTCGAAAACTCCATGCTTTGTCTGTCCGTTTAC 956 Query 985 CCCTCGTACATGGTGCCACGATAGATATGGTGTCGATACATGAAGAAATGGTCATAGCTA 1044 || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 957 CCTTCGTACATGGTGCCACGATGGATGTGGTGTCGATACATGAAGAAATGGTCATAGCTA 1016 Query 1045 TAGAAGTCATGGACGAGATCGAAGACGTCATCATCAAGTTTCTCCCACGACAGGTTGAAA 1104 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1017 TACAAGTCATGGACGAGATCGAAGACGTCATTATCAAGTTTCTCCCACGACAGGTTGAAA 1076 Query 1105 TAATCCTCTATGAGCTGACAGAATTGATCGGCATGTTCAATCAAGAATTGTTATATTTTG 1164 ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 1077 TAATCCTATATGAGCTGACAGAATTGATCGGCTTGTTTAATCAAGAATTGTTATATTTTG 1136 Query 1165 AAGAAATGGACGAGAGCCTTTTATCCATTCCTCTCTTCACGGCAAAGGAGAGTAGCTTGA 1224 ||||||||||| |||| ||||| |||||||||||||| |||| |||||||| || |||| Sbjct 1137 AAGAAATGGACAAGAGTCTTTTCTCCATTCCTCTCTTTGCGGCGAAGGAGAGGAGTTTGA 1196 Query 1225 GGGTCCATATTCTCCAAAAGACTGAAGAACAGAGATAAT----GTTTCTCTAATAACTCA 1280 ||||||||||||||| |||| ||||||||||||| || ||| | |||||||||| Sbjct 1197 AGGTCCATATTCTCCAGAAGAGTGAAGAACAGAGAAAAAAAAAGTTG-TATAATAACTCA 1255 Query 1281 AACGTTAGGACATGTAATTAAAATGTTAATCACATTGCACATTTTGCAAACTGGA 1335 || ||||||||||||||||||| ||||||| |||||| ||||||||||||||||| Sbjct 1256 AAAGTTAGGACATGTAATTAAA-TGTTAATAACATTGAACATTTTGCAAACTGGA 1309 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55345125985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5