BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25190.2
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492315 jgi|Araly1|492315|fgenesh2_kg.7__1748__AT4G25190.2 1820 0.0
> Ahg492315 jgi|Araly1|492315|fgenesh2_kg.7__1748__AT4G25190.2
Length=1398
Score = 1820 bits (985), Expect = 0.0
Identities = 1209/1315 (92%), Gaps = 23/1315 (2%)
Strand=Plus/Plus
Query 38 TCATATAGTTAACCGTCGTCATATATTAAAGAAGAAAATGG-------C--AACCACCGG 88
|||||||||||| |||||||| ||||||||||||||||||| | |||||||||
Sbjct 1 TCATATAGTTAATCGTCGTCAAATATTAAAGAAGAAAATGGCAACCACCAAAACCACCGG 60
Query 89 TCGGAGACTCCGTCCTCCATCGCCCAATAATAACCGGAGCCGGACTATAAGCTCTTCAAT 148
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 61 TCGGAGACTCCGTCCTCCGTCGCCCAATATTAACCGGAGCCGGACTATAAGCTCTTCGAT 120
Query 149 CTCTCTCCCAGTGTCCTTAAACGCCTCGTTATCGTCTTCTACTTCTTCATCTTCTTCCTC 208
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 121 CTCTCTCCCAGTGTCCTTAAACGCCTCGTTATCGTCTTCTACTTCTTCCTCCTCTTCCTC 180
Query 209 TTCGCCTTCCAATTCAAGCAA-ACGAGTGATGATAACCAGATCACAGTCCACAACAAGAT 267
|||||| |||||||||||||| | |||||||||||||||||||||| || ||||| ||||
Sbjct 181 TTCGCCATCCAATTCAAGCAAGA-GAGTGATGATAACCAGATCACACTCTACAACGAGAT 239
Query 268 CCTCCAGACCCATCGGATCATCCGACTCTAAATCCGGCGAGAACATAATCCCGGCGAGAA 327
| ||||| |||| |||||||||| || | ||||||||||| || ||||||||||||||||
Sbjct 240 CATCCAGGCCCACCGGATCATCCAACCCCAAATCCGGCGAAAATATAATCCCGGCGAGAA 299
Query 328 ACAGCGCATCAAGATCTCAAGAGATAAACAACGGTAGAAGCAGAGAGTCGTTTGCTCGGT 387
||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||
Sbjct 300 ACAGCGCGTCAAGATCTCACGAGATAAACAACGGTAGAAGCAGAGAGGCGTTTGCTCAGT 359
Query 388 ACTTGGAGCAACGT-ACGCGTGGTAGTCCTCGTAGTAACGCTTCATCGAGAGGGGTAAAG 446
|||| || |||||| | ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 360 ACTTAGATCAACGTGA-GCGTGGTAGTCCTCGTAATAACGCTTCATCTAGAGGGGTAAAA 418
Query 447 CCGGGAGCCAGCTCACCATCGGCGTGGGCGTTGT-CTCCTGGAAGACTTTCGACTATGAA 505
|||||||| ||||||||||||||||||||||||| || | || ||| ||||||| |||||
Sbjct 419 CCGGGAGCGAGCTCACCATCGGCGTGGGCGTTGTCCT-CAGGGAGAGTTTCGACGATGAA 477
Query 506 GACGCCTCTGTCCAGCTCAGCTCCGACGACTTCAATGTGCATGACGCCGCCTGAGTCACC 565
||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 478 GACATATCTGTCCAGCTCAGCTCCGGCGAATTCAATGTGCATGACGCCGCCTGAATCACC 537
Query 566 CGTAAGCAAGGCCAAGATAAGAAGCGGTGGCGGTGGAGCGGTGGCAGGAGTTTTGAAGTA 625
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 538 GGTAAGCAAGGCCAAGATAAGAAGCGGTGGCGGTGGAGCTGTGGCCGGAGTTTTGAAGTA 597
Query 626 CTTCATGGCGCAGAAGAAAGTATCTCCGGTACAAGAGGAGGATTATCACCGGTTTAGGAT 685
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 598 CTTCATGGCGCAGAAGAAAGTATCTCCGGTCCAAGAGGAGGATTATCACCGGTTTAGGGT 657
Query 686 TTTTCAAAACAGATTACTTCAATGGAGGTTTGTTAACGCAAGAACTGAAGCCACTATGGC 745
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTTGCAAAACAGATTACTTCAATGGAGGTTTGTTAACGCAAGAACTGAAGCCACTATGGC 717
Query 746 -AAACCTTAAGATCAACGTTGAGGATCAGTTGTTTTGGGTTTGGCTTAGGATATACAAAA 804
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 TAAAC-TTAAGATCAACGTTGAGGATCAGTTGTTTTGGGTTTGGCTAAGGATATACAAAA 776
Query 805 TGAGGAACTACGTTGTAGAAAATTTGATTGAAATTCAAAGGCTCCGTCAAGATATCAAAG 864
||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 777 TGAGGAACTACGTAGTGGAAAATTTGATTGAAGTTCAAAGGCTCCGTCAAGAAATCAAAC 836
Query 865 TACGTGAAGTTCTCAGCCTCCAAATGCCTTTACTTAATGAGTGGTCAAAAATAGACGCAA 924
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 837 TAGGTGAAGTTCTCAGCCTCCAAATGCCTTTACTTAATGATTGGTCAAAATTAGAAGCAA 896
Query 925 AAAACTCCGAAGCGTTGAGCAAGCTAACTCGAAAACTCCATGCTTTGTCTGTCCGATTAC 984
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 AAAACTCCGAAGCATTGAGCAAGCTAACTCGAAAACTCCATGCTTTGTCTGTCCGTTTAC 956
Query 985 CCCTCGTACATGGTGCCACGATAGATATGGTGTCGATACATGAAGAAATGGTCATAGCTA 1044
|| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 957 CCTTCGTACATGGTGCCACGATGGATGTGGTGTCGATACATGAAGAAATGGTCATAGCTA 1016
Query 1045 TAGAAGTCATGGACGAGATCGAAGACGTCATCATCAAGTTTCTCCCACGACAGGTTGAAA 1104
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1017 TACAAGTCATGGACGAGATCGAAGACGTCATTATCAAGTTTCTCCCACGACAGGTTGAAA 1076
Query 1105 TAATCCTCTATGAGCTGACAGAATTGATCGGCATGTTCAATCAAGAATTGTTATATTTTG 1164
||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1077 TAATCCTATATGAGCTGACAGAATTGATCGGCTTGTTTAATCAAGAATTGTTATATTTTG 1136
Query 1165 AAGAAATGGACGAGAGCCTTTTATCCATTCCTCTCTTCACGGCAAAGGAGAGTAGCTTGA 1224
||||||||||| |||| ||||| |||||||||||||| |||| |||||||| || ||||
Sbjct 1137 AAGAAATGGACAAGAGTCTTTTCTCCATTCCTCTCTTTGCGGCGAAGGAGAGGAGTTTGA 1196
Query 1225 GGGTCCATATTCTCCAAAAGACTGAAGAACAGAGATAAT----GTTTCTCTAATAACTCA 1280
||||||||||||||| |||| ||||||||||||| || ||| | ||||||||||
Sbjct 1197 AGGTCCATATTCTCCAGAAGAGTGAAGAACAGAGAAAAAAAAAGTTG-TATAATAACTCA 1255
Query 1281 AACGTTAGGACATGTAATTAAAATGTTAATCACATTGCACATTTTGCAAACTGGA 1335
|| ||||||||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 1256 AAAGTTAGGACATGTAATTAAA-TGTTAATAACATTGAACATTTTGCAAACTGGA 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5